Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009484

Physical Location & Seq

Genomic Coordinates Forward (+)

13099813 .. 13102261

Gene Structure 2449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G100700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGATCTCCAGCCCTCTCAACAATCTCAGAAGCTCCAAAGTTTCCCCTTTTCCATTCTAATCAGAAGAGAACTTCGTTATGCGGTCTCTTTCTTCCTGCTCCTAGTCTCTTCCTTATTTATTCTTAGTCTTGTAACCCCATTTGACTCGCAGTTTCTATCTGATCATTTGGGTTTCTTATCCCAAATCCTACCAACTAATCACAATATATCTCCAGGGACTTGTGATTATTCCTATGGCAGATGGGTCCGCGACGAGAGCCATCCACTTCAGCCCTACACCGAAAACTGCCCGTTCCTAGACCCGGGCTTCCGGTGCAGCCAAAGTGGTCGAAAAGACGAAGGTTATCGGAGATGGCGGTGGCAGCCGGCTGGCTGTGATGTTTTGAGATTTAATGCAAGTGACTTCTTGCAAAGGAGCAGAAACGGACGGATAGTGTTTGCTGGCGACTCGATCGGAAGGAACCAGTGGGAATCTTTGTTATGCATGCTAGCAGAAGCAGTGTCCAACAAGTCTAGAATCTATGAAGTGAACGGGAACCCCATAACCAAACACAAGGGTTTTCTCTCCATGCGGTTCGAGGATTACAACCTCACAGTTGAATATTACAGGGCACCCTTCCTTGTGGTTGTAGGGCACCCACCCCATAACTCACCGGACCAAGTCAAGACCACAATCAAGCTCGACCAGTTCCACTGGTACTCCAAACATTGGGTGGGGGCCGATGTCCTAATTTTCAGTGCAGGGCACTGGTGGAACCAAGACAAAACAGTAAGGATGGGATGCTACTTTGAGGAAGGCGGGAAAGTGAACTCCACAATGGATGTGATGGAAGCATTTAGGAGGTCTTTACAAACCTGGAAGTTTTGGGTGTTAGAGAATATAGAACCTCTAAAGACTCATGTTTTCTTTCGTAGCTACTCCCCGGTACATTACAGGAACGGGACATGGAACGAAGGGGGACTTTGCGATCCCTATTTGGAGCCAGAAACAGACTACAAAAATCTTGAAGCTGACCCAGTGAATAATCTATACATATCTGAATCAATCAAACAGATGGAATATGAAAACTGGAAGGTCCAGTTCTTAAACATCACATATCTAACAGAGTTCAGGAAGGATGGTCACCCTTCAAAGTACCGTGAGCCAGGGACTCCAGCCGATGCTCCACAAGATTGCAGCCACTGGTGCCTACCCGGAGTGCCTGACACATGGAATGCACTAATTTATGCCAATTTACTGGCAAAAGGATTCAGAACCAATAGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

424

Amino Acids

49.35

Weight (kDa)

6.89

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11570 AT5G06230 AT5G06230 AT5G06230
fragaria_vesca	FvH4_6g19550 FvH4_6g19550 FvH4_6g19550 FvH4_6g19550
malus_domestica	MD12G1031900.v1.1 MD14G1032200.v1.1
prunus_persica	Prupe.7G100700_v2.0.a1
pyrus_communis	pycom12g02960
rosa_chinensis	RchiOBHm_Chr3g0474891
rosa_laevigata	RLG00000023883
rosa_multiflora	Rmu_sc0008866.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406760
rosa_rugosa	Rorug03G0145200
rosa_samantha	Rh3AG194800 Rh3BG224700 Rh3CG219700 Rh3DG220300
rosa_wichuraiana	Rw3G017730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	613, 636, 1188
AccB7I	CCANNNNNTGG	1 cut(s)	711
AccII	CGCG	1 cut(s)	252
AciI	CCGC	5 cut(s)	83, 250, 358, 574, 801
AclWI	GGATC	2 cut(s)	12, 965
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	3 cut(s)	701, 930, 1139
AfiI	CCNNNNNNNGG	2 cut(s)	304, 711
AgsI	TTSAA	3 cut(s)	602, 1010, 1134
AjnI	CCWGG	3 cut(s)	214, 857, 1147
AluBI	AGCT	4 cut(s)	34, 682, 918, 1013
AluI	AGCT	4 cut(s)	34, 682, 918, 1013
Alw26I	GTCTC	2 cut(s)	91, 112
AlwI	GGATC	2 cut(s)	12, 965
AlwNI	CAGNNNCTG	1 cut(s)	1185
Ama87I	CYCGRG	1 cut(s)	304
AoxI	GGCC	1 cut(s)	720
ApeKI	GCWGC	3 cut(s)	318, 364, 1179
AspS9I	GGNCC	4 cut(s)	247, 658, 720, 1078
AsuC2I	CCSGG	4 cut(s)	305, 306, 926, 1197
AsuHPI	GGTGA	2 cut(s)	645, 1118
AsuNHI	GCTAGC	1 cut(s)	490
AvaI	CYCGRG	1 cut(s)	304
AvaII	GGWCC	3 cut(s)	247, 658, 1078
BaeGI	GKGCMC	3 cut(s)	616, 639, 750
BanI	GGYRCC	3 cut(s)	613, 636, 1188
BbvI	GCAGC	3 cut(s)	330, 376, 1191
BccI	CCATC	7 cut(s)	237, 270, 348, 772, 823, 1051, 1115
BciT130I	CCWGG	3 cut(s)	216, 859, 1149
BclI	TGATCA	1 cut(s)	163
BcnI	CCSGG	4 cut(s)	305, 306, 926, 1197
BcoDI	GTCTC	2 cut(s)	91, 112
BfaI	CTAG	4 cut(s)	104, 299, 491, 516
BisI	GCNGC	3 cut(s)	319, 365, 1180
BlsI	GCNGC	3 cut(s)	320, 366, 1181
Bme1390I	CCNGG	7 cut(s)	216, 305, 306, 859, 926, 1149, 1197
Bme18I	GGWCC	3 cut(s)	247, 658, 1078
BmeT110I	CYCGRG	1 cut(s)	304
BmgT120I	GGNCC	4 cut(s)	247, 658, 720, 1078
BmiI	GGNNCC	9 cut(s)	248, 464, 539, 615, 638, 721, 758, 984, 1190
BmrFI	CCNGG	7 cut(s)	216, 305, 306, 859, 926, 1149, 1197
BmrI	ACTGGG	1 cut(s)	1013
BmsI	GCATC	2 cut(s)	773, 1153
BmtI	GCTAGC	1 cut(s)	494
BmuI	ACTGGG	1 cut(s)	1013
BpmI	CTGGAG	2 cut(s)	198, 1140
BpuMI	CCSGG	4 cut(s)	305, 306, 926, 1197
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	4 cut(s)	215, 304, 924, 1148
BsaWI	WCCGGW	2 cut(s)	312, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	686, 716
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 711
Bse118I	RCCGGY	1 cut(s)	367
Bse1I	ACTGG	9 cut(s)	466, 688, 701, 755, 1019, 1076, 1081, 1190, 1245
BseBI	CCWGG	3 cut(s)	216, 859, 1149
BseDI	CCNNGG	4 cut(s)	215, 304, 924, 1148
BseGI	GGATG	5 cut(s)	262, 783, 788, 829, 1126
BseLI	CCNNNNNNNGG	2 cut(s)	304, 711
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	9 cut(s)	466, 688, 701, 755, 1019, 1076, 1081, 1190, 1245
BseSI	GKGCMC	3 cut(s)	616, 639, 750
BseXI	GCAGC	3 cut(s)	330, 376, 1191
BsgI	GTGCAG	2 cut(s)	337, 762
Bsh1236I	CGCG	1 cut(s)	252
Bsh1285I	CGRYCG	1 cut(s)	456
BshFI	GGCC	1 cut(s)	722
BshNI	GGYRCC	3 cut(s)	613, 636, 1188
BsiEI	CGRYCG	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	304
BsiSI	CCGG	6 cut(s)	305, 313, 368, 656, 926, 1197
BslFI	GGGAC	4 cut(s)	232, 958, 975, 1165
BslI	CCNNNNNNNGG	2 cut(s)	304, 711
BsmAI	GTCTC	2 cut(s)	91, 112
BsmFI	GGGAC	4 cut(s)	232, 958, 975, 1165
BsmI	GAATGC	1 cut(s)	1222
BsnI	GGCC	1 cut(s)	722
Bso31I	GGTCTC	1 cut(s)	91
BsoBI	CYCGRG	1 cut(s)	304
Bsp1286I	GDGCHC	3 cut(s)	616, 639, 750
Bsp143I	GATC	4 cut(s)	4, 163, 453, 970
BspACI	CCGC	5 cut(s)	83, 250, 358, 574, 801
BspANI	GGCC	1 cut(s)	722
BspCNI	CTCAG	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	9 cut(s)	248, 464, 539, 615, 638, 721, 758, 984, 1190
BspOI	GCTAGC	1 cut(s)	494
BspPI	GGATC	2 cut(s)	12, 965
BspT107I	GGYRCC	3 cut(s)	613, 636, 1188
BspTNI	GGTCTC	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	367
BsrI	ACTGG	9 cut(s)	466, 688, 701, 755, 1019, 1076, 1081, 1190, 1245
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	4 cut(s)	215, 304, 924, 1148
BssMI	GATC	4 cut(s)	4, 163, 453, 970
Bst2UI	CCWGG	3 cut(s)	216, 859, 1149
Bst4CI	ACNGT	3 cut(s)	598, 772, 1142
Bst6I	CTCTTC	2 cut(s)	61, 115
BstC8I	GCNNGC	5 cut(s)	369, 373, 445, 488, 492
BstDEI	CTNAG	2 cut(s)	27, 125
BstEII	GGTNACC	1 cut(s)	1124
BstF5I	GGATG	5 cut(s)	262, 783, 788, 829, 1126
BstFNI	CGCG	1 cut(s)	252
BstKTI	GATC	4 cut(s)	7, 166, 456, 973
BstMAI	GTCTC	2 cut(s)	91, 112
BstMBI	GATC	4 cut(s)	4, 163, 453, 970
BstMCI	CGRYCG	1 cut(s)	456
BstMWI	GCNNNNNNNGC	4 cut(s)	258, 315, 364, 1188
BstNI	CCWGG	3 cut(s)	216, 859, 1149
BstNSI	RCATGY	1 cut(s)	490
BstPI	GGTNACC	1 cut(s)	1124
BstSCI	CCNGG	7 cut(s)	214, 303, 304, 857, 924, 1147, 1195
BstSLI	GKGCMC	3 cut(s)	616, 639, 750
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	3 cut(s)	330, 376, 1191
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	1240
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	722
BtsCI	GGATG	5 cut(s)	262, 783, 788, 829, 1126
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	7 cut(s)	473, 507, 694, 745, 748, 1026, 1183
Cac8I	GCNNGC	5 cut(s)	369, 373, 445, 488, 492
CaiI	CAGNNNCTG	1 cut(s)	1185
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	4 cut(s)	247, 658, 720, 1078
Cfr9I	CCCGGG	1 cut(s)	304
Csp6I	GTAC	3 cut(s)	700, 929, 1138
CviAII	CATG	5 cut(s)	487, 571, 902, 948, 1212
CviQI	GTAC	3 cut(s)	700, 929, 1138
DdeI	CTNAG	2 cut(s)	27, 125
DpnI	GATC	4 cut(s)	6, 165, 455, 972
DpnII	GATC	4 cut(s)	4, 163, 453, 970
Eam1104I	CTCTTC	2 cut(s)	61, 115
EarI	CTCTTC	2 cut(s)	61, 115
Eco31I	GGTCTC	1 cut(s)	91
Eco47I	GGWCC	3 cut(s)	247, 658, 1078
Eco57I	CTGAAG	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	304
Eco91I	GGTNACC	1 cut(s)	1124
EcoO65I	GGTNACC	1 cut(s)	1124
EcoRII	CCWGG	3 cut(s)	214, 857, 1147
EcoT22I	ATGCAT	1 cut(s)	488
FaeI	CATG	5 cut(s)	490, 574, 905, 951, 1215
FalI	AAGNNNNNCTT	2 cut(s)	948, 980
FaqI	GGGAC	4 cut(s)	232, 958, 975, 1165
FatI	CATG	5 cut(s)	486, 570, 901, 947, 1211
FauI	CCCGC	1 cut(s)	794
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	3 cut(s)	319, 365, 1180
FokI	GGATG	5 cut(s)	249, 790, 795, 836, 1133
Fsp4HI	GCNGC	3 cut(s)	319, 365, 1180
FspBI	CTAG	4 cut(s)	104, 299, 491, 516
GluI	GCNGC	3 cut(s)	319, 365, 1180
GsuI	CTGGAG	2 cut(s)	198, 1140
HaeIII	GGCC	1 cut(s)	722
HapII	CCGG	6 cut(s)	305, 313, 368, 656, 926, 1197
Hin1II	CATG	5 cut(s)	490, 574, 905, 951, 1215
HinfI	GANTC	8 cut(s)	146, 449, 473, 519, 898, 1043, 1153, 1251
HpaII	CCGG	6 cut(s)	305, 313, 368, 656, 926, 1197
HphI	GGTGA	2 cut(s)	645, 1118
Hpy166II	GTNNAC	2 cut(s)	532, 811
Hpy188I	TCNGA	7 cut(s)	30, 65, 163, 351, 458, 1042, 1256
Hpy188III	TCNNGA	4 cut(s)	516, 667, 1007, 1114
Hpy8I	GTNNAC	2 cut(s)	532, 811
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	8 cut(s)	335, 453, 628, 791, 950, 1069, 1111, 1140
HpyCH4III	ACNGT	3 cut(s)	598, 772, 1142
HpyCH4V	TGCA	7 cut(s)	318, 398, 412, 486, 743, 1179, 1220
HpyF10VI	GCNNNNNNNGC	4 cut(s)	258, 315, 364, 1188
HpyF3I	CTNAG	2 cut(s)	27, 125
Hsp92II	CATG	5 cut(s)	490, 574, 905, 951, 1215
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	4, 163, 453, 970
LmnI	GCTCC	5 cut(s)	39, 105, 417, 982, 1171
Lsp1109I	GCAGC	3 cut(s)	330, 376, 1191
LweI	GCATC	2 cut(s)	773, 1153
MaeI	CTAG	4 cut(s)	104, 299, 491, 516
MaeIII	GTNAC	3 cut(s)	133, 401, 1124
MalI	GATC	4 cut(s)	6, 165, 455, 972
MboI	GATC	4 cut(s)	4, 163, 453, 970
MboII	GAAGA	3 cut(s)	78, 85, 102
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	3 cut(s)	616, 639, 750
MluCI	AATT	3 cut(s)	732, 1224, 1234
MlyI	GAGTC	4 cut(s)	140, 443, 892, 1147
MmeI	TCCRAC	1 cut(s)	531
MnlI	CCTC	6 cut(s)	25, 574, 602, 787, 837, 900
Mph1103I	ATGCAT	1 cut(s)	488
MroNI	GCCGGC	1 cut(s)	367
MseI	TTAA	2 cut(s)	393, 1088
MspI	CCGG	6 cut(s)	305, 313, 368, 656, 926, 1197
MspR9I	CCNGG	7 cut(s)	216, 305, 306, 859, 926, 1149, 1197
Mva1269I	GAATGC	1 cut(s)	1222
MvaI	CCWGG	3 cut(s)	216, 859, 1149
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	4 cut(s)	258, 315, 364, 1188
NaeI	GCCGGC	1 cut(s)	369
NciI	CCSGG	4 cut(s)	305, 306, 926, 1197
NdeII	GATC	4 cut(s)	4, 163, 453, 970
NgoMIV	GCCGGC	1 cut(s)	367
NheI	GCTAGC	1 cut(s)	490
NlaIII	CATG	5 cut(s)	490, 574, 905, 951, 1215
NlaIV	GGNNCC	9 cut(s)	248, 464, 539, 615, 638, 721, 758, 984, 1190
NmuCI	GTSAC	2 cut(s)	401, 1124
NsiI	ATGCAT	1 cut(s)	488
NspI	RCATGY	1 cut(s)	490
PaeI	GCATGC	1 cut(s)	490
PctI	GAATGC	1 cut(s)	1222
PdiI	GCCGGC	1 cut(s)	369
PfeI	GAWTC	4 cut(s)	473, 519, 1043, 1251
PflFI	GACNNNGTC	1 cut(s)	662
PflMI	CCANNNNNTGG	1 cut(s)	711
PkrI	GCNGC	3 cut(s)	320, 366, 1181
Ple19I	CGATCG	1 cut(s)	456
PleI	GAGTC	4 cut(s)	140, 443, 892, 1147
PpsI	GAGTC	4 cut(s)	140, 443, 892, 1147
Psp6I	CCWGG	3 cut(s)	214, 857, 1147
PspEI	GGTNACC	1 cut(s)	1124
PspGI	CCWGG	3 cut(s)	214, 857, 1147
PspN4I	GGNNCC	9 cut(s)	248, 464, 539, 615, 638, 721, 758, 984, 1190
PspPI	GGNCC	4 cut(s)	247, 658, 720, 1078
PstNI	CAGNNNCTG	1 cut(s)	1185
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	662
PvuI	CGATCG	1 cut(s)	456
RsaI	GTAC	3 cut(s)	701, 930, 1139
RsaNI	GTAC	3 cut(s)	700, 929, 1138
SaqAI	TTAA	2 cut(s)	393, 1088
SatI	GCNGC	3 cut(s)	319, 365, 1180
Sau3AI	GATC	4 cut(s)	4, 163, 453, 970
Sau96I	GGNCC	4 cut(s)	247, 658, 720, 1078
SchI	GAGTC	4 cut(s)	140, 443, 892, 1147
ScrFI	CCNGG	7 cut(s)	216, 305, 306, 859, 926, 1149, 1197
SduI	GDGCHC	3 cut(s)	616, 639, 750
SfaNI	GCATC	2 cut(s)	773, 1153
SinI	GGWCC	3 cut(s)	247, 658, 1078
SmaI	CCCGGG	1 cut(s)	306
SphI	GCATGC	1 cut(s)	490
Sse9I	AATT	3 cut(s)	732, 1224, 1234
SsiI	CCGC	5 cut(s)	83, 250, 358, 574, 801
SspI	AATATT	1 cut(s)	605
SspMI	CTAG	4 cut(s)	104, 299, 491, 516
StyD4I	CCNGG	7 cut(s)	214, 303, 304, 857, 924, 1147, 1195
TaaI	ACNGT	3 cut(s)	598, 772, 1142
TaqI	TCGA	4 cut(s)	331, 452, 579, 684
TasI	AATT	3 cut(s)	732, 1224, 1234
TfiI	GAWTC	4 cut(s)	473, 519, 1043, 1251
Tru1I	TTAA	2 cut(s)	393, 1088
Tru9I	TTAA	2 cut(s)	393, 1088
TscAI	CASTG	7 cut(s)	473, 507, 701, 745, 755, 1026, 1190
TseFI	GTSAC	2 cut(s)	401, 1124
TseI	GCWGC	3 cut(s)	318, 364, 1179
Tsp45I	GTSAC	2 cut(s)	401, 1124
TspDTI	ATGAA	2 cut(s)	540, 1080
TspGWI	ACGGA	2 cut(s)	441, 445
TspMI	CCCGGG	1 cut(s)	304
TspRI	CASTG	7 cut(s)	473, 507, 701, 745, 755, 1026, 1190
Tth111I	GACNNNGTC	1 cut(s)	662
Van91I	CCANNNNNTGG	1 cut(s)	711
VpaK11BI	GGWCC	3 cut(s)	247, 658, 1078
XbaI	TCTAGA	1 cut(s)	515
XceI	RCATGY	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	712
XmaI	CCCGGG	1 cut(s)	304
XspI	CTAG	4 cut(s)	104, 299, 491, 516
Zsp2I	ATGCAT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.