Rorug03G0145200

Protein trichome birefringence-like 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009484
Physical Location & Seq
Forward (+)
11913138 .. 11914817
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0145200.1

Sequence Viewer

Length: 423 bp
ATGGCGTTCATGTCTAGCTTCCGTCGTGTTCTTGGCGGATCGGCATCTGCTCTTCCATCCCAATTCGCTGCCATTCGTCACAACACAACCCTCACATCCCCTAAGCTATTCATCAGCGGACTTTCGAGATTAACAACTGATGAAAAACTTAAGCAGACGTTTTCTGAATTTGGGCAGATTGAACAGGCAAAAGTGATAACCGATAGGGCGACTGGAAGATCAAAGGGGTTCGCTTTCATTACATACTCAACGATTGAAGAAGCTGAGAAGGCAAAAGAGGGAATGAATGGTAAGTTCTTGGATGGGTGGGTCATTTTCGTTGATCCTGCCAAGCCTAGGGAGTATAGACCCCCACCTCAAGCACAGCAAGAGTCTTCTGATAATGGTTTCAAAGTAAACAAGACTATTGGATGGTGTGGATGA

Protein Analysis

140

Amino Acids

15.49

Weight (kDa)

9.52

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 36 - 102 2.1e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11570 AT5G06230 AT5G06230 AT5G06230
fragaria_vesca FvH4_6g19550 FvH4_6g19550 FvH4_6g19550 FvH4_6g19550
malus_domestica MD12G1031900.v1.1 MD14G1032200.v1.1
prunus_persica Prupe.7G100700_v2.0.a1
pyrus_communis pycom12g02960
rosa_chinensis RchiOBHm_Chr3g0474891
rosa_laevigata RLG00000023883
rosa_multiflora Rmu_sc0008866.1_g000002
rosa_roxburghii Rroxscaffold_6G00406760
rosa_rugosa Rorug03G0145200
rosa_samantha Rh3AG194800 Rh3BG224700 Rh3CG219700 Rh3DG220300
rosa_wichuraiana Rw3G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 36, 117
AclWI GGATC 2 cut(s) 46, 317
AcsI RAATTY 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 336
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 3 cut(s) 182, 257, 391
AluBI AGCT 3 cut(s) 18, 106, 263
AluI AGCT 3 cut(s) 18, 106, 263
AlwI GGATC 2 cut(s) 46, 317
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 167
AspA2I CCTAGG 1 cut(s) 335
AvrII CCTAGG 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 55
BccI CCATC 3 cut(s) 64, 296, 405
BfaI CTAG 2 cut(s) 15, 336
BfrI CTTAAG 1 cut(s) 149
BisI GCNGC 1 cut(s) 69
BlnI CCTAGG 1 cut(s) 335
BlsI GCNGC 1 cut(s) 70
BmsI GCATC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 366
Bpu10I CCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 342
BsaBI GATNNNNATC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 335
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 4 cut(s) 56, 95, 307, 416
BseJI GATNNNNATC 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 217
BseXI GCAGC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 336
Bsp143I GATC 3 cut(s) 38, 218, 322
BspACI CCGC 2 cut(s) 36, 117
BspCNI CTCAG 1 cut(s) 256
BspPI GGATC 2 cut(s) 46, 317
BspQI GCTCTTC 1 cut(s) 57
BspTI CTTAAG 1 cut(s) 149
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 3 cut(s) 38, 218, 322
BssT1I CCWWGG 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 57
BstAFI CTTAAG 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 102, 264
BstF5I GGATG 4 cut(s) 56, 95, 307, 416
BstKTI GATC 3 cut(s) 41, 221, 325
BstMBI GATC 3 cut(s) 38, 218, 322
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 366
BtsCI GGATG 4 cut(s) 56, 95, 307, 416
CviAII CATG 1 cut(s) 10
CviJI RGCY 4 cut(s) 18, 106, 263, 334
CviKI_1 RGCY 4 cut(s) 18, 106, 263, 334
DdeI CTNAG 2 cut(s) 102, 264
DpnI GATC 3 cut(s) 40, 220, 324
DpnII GATC 3 cut(s) 38, 218, 322
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 1 cut(s) 13
FaiI YATR 3 cut(s) 11, 244, 345
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 3 cut(s) 43, 82, 314
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 15, 336
GluI GCNGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 13
HinfI GANTC 1 cut(s) 371
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 2 cut(s) 166, 379
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 397
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 1 cut(s) 262
HpyCH4IV ACGT 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 2 cut(s) 102, 264
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 1 cut(s) 13
Kzo9I GATC 3 cut(s) 38, 218, 322
LguI GCTCTTC 1 cut(s) 57
LpnPI CCDG 3 cut(s) 170, 198, 339
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 53
MaeI CTAG 2 cut(s) 15, 336
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 77
MalI GATC 3 cut(s) 40, 220, 324
MboI GATC 3 cut(s) 38, 218, 322
MboII GAAGA 4 cut(s) 44, 228, 269, 366
MluCI AATT 2 cut(s) 62, 167
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 3 cut(s) 101, 271, 366
MseI TTAA 2 cut(s) 131, 150
MspA1I CMGCKG 1 cut(s) 117
MspCI CTTAAG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 3 cut(s) 38, 218, 322
NlaIII CATG 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 131, 150
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 3 cut(s) 38, 218, 322
SchI GAGTC 1 cut(s) 380
SetI ASST 5 cut(s) 20, 108, 161, 265, 358
SfaNI GCATC 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 149, 357
SmoI CTYRAG 2 cut(s) 149, 357
Sse9I AATT 2 cut(s) 62, 167
SsiI CCGC 2 cut(s) 36, 117
SspMI CTAG 2 cut(s) 15, 336
StyI CCWWGG 1 cut(s) 335
TaiI ACGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 125
TasI AATT 2 cut(s) 62, 167
Tru1I TTAA 2 cut(s) 131, 150
Tru9I TTAA 2 cut(s) 131, 150
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 4 cut(s) 100, 156, 226, 299
TspGWI ACGGA 1 cut(s) 11
Vha464I CTTAAG 1 cut(s) 149
XapI RAATTY 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 335
XspI CTAG 2 cut(s) 15, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.