Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009484

Physical Location & Seq

Genomic Coordinates Reverse (-)

20585628 .. 20587607

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG220300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGATCTTCAACCCTCCAATGAATCTCAGAAGCCCCAAGGTTTCCCCTTTTCCATTTTTACCAGAAGAGACCTTCGTTATCCGCTCTCTTTCTTTGGTGTCCTCGTCTGTTCCATCGCTATTCTCAATCTTTTCACCCCATTTGACTCGCATGTTATATCTCGTTTGGGTTCCGTATATTCCCAAATCCTACCAGACATCCACAAATCATCATCATCCTCTGGCACTTGTGACTACTCCTATGGAAGATGGGTCCGAGACAAGAATCATGCACTTCAGTTGTACAGTGAGAGCTGCCCGTTTCTCGATCCCGGCTTTCGGTGCAGCCAGAGTGGTCGGAAAGACGAAGATTATCGTCAATGGCGATGGCAACCGGCCGGCTGTGATCTTTTGAGGTTTAACGCAAGCGACTTCTTGGAGAGAAGTCGAAATGGACGAATAGTGTTTGCTGGCGACTCGATCGGAAGGAACCAGTGGGAATCTTTGCTGTGCATGCTTGCAGAAGCAGTATCCAACAAGTCTAGAATCTATGAAGTAAATGGGAACCCCATTACAAAACACACAGGTTTTCTATCAATGCGATTCCAGGACTACAACCTCACAGTTGAATATTACAGGGCACCCTTCCTTGTGGTCGTAGGGCACCCAACACAAAATGCATCAAGCCAAGTCAGGATCACAGTTAAGGTCGACCAATTCCACTGGTTTTCCAAACATTGGGTTGGAGCAGATGTTCTGATTTTCAGTGCAGGGCACTGGTGGAACGAGGATAAAACAGTAAGGATAGGTCACTACTTTGAGGAAGCCGGTAAAGTGAATTTGACAATGGATGTGATGGAGGCATTCAGGAGGTCGTTGAAAACCTGGAAGGCTTGGGTACTAAAGAATTTAGATCCTCAAAGGACTCATGTTTTCTTCCGTAGCTACTCCCCGGTACATTACAGGAATGGCACATGGAATGAAGGCGGCCTGTGTGATACCTTTACGGAGCCAGAAAGTTCTCATCTTGAACCTGACCCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

341

Amino Acids

39.47

Weight (kDa)

8.12

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	76 - 129	9.8e-19	PMR5 N terminal Domain
PC-Esterase	PF13839	132 - 334	2e-65	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11570 AT5G06230 AT5G06230 AT5G06230
fragaria_vesca	FvH4_6g19550 FvH4_6g19550 FvH4_6g19550 FvH4_6g19550
malus_domestica	MD12G1031900.v1.1 MD14G1032200.v1.1
prunus_persica	Prupe.7G100700_v2.0.a1
pyrus_communis	pycom12g02960
rosa_chinensis	RchiOBHm_Chr3g0474891
rosa_laevigata	RLG00000023883
rosa_multiflora	Rmu_sc0008866.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406760
rosa_rugosa	Rorug03G0145200
rosa_samantha	Rh3AG194800 Rh3BG224700 Rh3CG219700 Rh3DG220300
rosa_wichuraiana	Rw3G017730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	619, 642
AccB7I	CCANNNNNTGG	1 cut(s)	717
AccBSI	CCGCTC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	690
AciI	CCGC	2 cut(s)	83, 966
AclWI	GGATC	4 cut(s)	12, 302, 683, 887
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	2 cut(s)	817, 886
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	3 cut(s)	284, 879, 936
AfiI	CCNNNNNNNGG	2 cut(s)	318, 717
AgsI	TTSAA	4 cut(s)	11, 608, 859, 1010
AjnI	CCWGG	2 cut(s)	585, 863
AloI	GAACNNNNNNTCC	2 cut(s)	717, 749
AluBI	AGCT	2 cut(s)	294, 924
AluI	AGCT	2 cut(s)	294, 924
Alw26I	GTCTC	2 cut(s)	63, 252
AlwI	GGATC	4 cut(s)	12, 302, 683, 887
AoxI	GGCC	2 cut(s)	375, 967
ApeKI	GCWGC	2 cut(s)	294, 324
ApoI	RAATTY	2 cut(s)	817, 886
AspS9I	GGNCC	1 cut(s)	253
AsuC2I	CCSGG	2 cut(s)	312, 932
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	253
BaeGI	GKGCMC	3 cut(s)	622, 645, 756
BanI	GGYRCC	2 cut(s)	619, 642
BbvI	GCAGC	2 cut(s)	281, 336
BccI	CCATC	4 cut(s)	122, 243, 360, 829
BciT130I	CCWGG	2 cut(s)	587, 865
BciVI	GTATCC	1 cut(s)	520
BcnI	CCSGG	2 cut(s)	312, 932
BcoDI	GTCTC	2 cut(s)	63, 252
BfaI	CTAG	1 cut(s)	522
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	3 cut(s)	295, 325, 967
BlsI	GCNGC	3 cut(s)	296, 326, 968
Bme1390I	CCNGG	4 cut(s)	312, 587, 865, 932
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	7 cut(s)	172, 254, 470, 545, 621, 644, 990
BmrFI	CCNGG	4 cut(s)	312, 587, 865, 932
BmrI	ACTGGG	1 cut(s)	1013
BmsI	GCATC	1 cut(s)	668
BmuI	ACTGGG	1 cut(s)	1013
BpuMI	CCSGG	2 cut(s)	312, 932
BsaI	GGTCTC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	37, 930
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 717
Bse118I	RCCGGY	3 cut(s)	373, 377, 806
Bse1I	ACTGG	4 cut(s)	472, 707, 761, 1019
BseBI	CCWGG	2 cut(s)	587, 865
BseDI	CCNNGG	2 cut(s)	37, 930
BseGI	GGATG	3 cut(s)	198, 215, 835
BseLI	CCNNNNNNNGG	2 cut(s)	318, 717
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	4 cut(s)	472, 707, 761, 1019
BseSI	GKGCMC	3 cut(s)	622, 645, 756
BseX3I	CGGCCG	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	281, 336
BsgI	GTGCAG	2 cut(s)	343, 768
Bsh1285I	CGRYCG	2 cut(s)	378, 462
BshFI	GGCC	2 cut(s)	377, 969
BshNI	GGYRCC	2 cut(s)	619, 642
BsiEI	CGRYCG	2 cut(s)	378, 462
BsiSI	CCGG	5 cut(s)	312, 374, 378, 807, 932
BslI	CCNNNNNNNGG	2 cut(s)	318, 717
BsmAI	GTCTC	2 cut(s)	63, 252
BsmI	GAATGC	1 cut(s)	842
BsnI	GGCC	2 cut(s)	377, 969
Bso31I	GGTCTC	1 cut(s)	63
Bsp1286I	GDGCHC	3 cut(s)	622, 645, 756
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
BspACI	CCGC	2 cut(s)	83, 966
BspANI	GGCC	2 cut(s)	377, 969
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	7 cut(s)	172, 254, 470, 545, 621, 644, 990
BspPI	GGATC	4 cut(s)	12, 302, 683, 887
BspT107I	GGYRCC	2 cut(s)	619, 642
BspTNI	GGTCTC	1 cut(s)	63
BsrBI	CCGCTC	1 cut(s)	85
BsrFI	RCCGGY	3 cut(s)	373, 377, 806
BsrGI	TGTACA	1 cut(s)	282
BsrI	ACTGG	4 cut(s)	472, 707, 761, 1019
BssAI	RCCGGY	3 cut(s)	373, 377, 806
BssECI	CCNNGG	2 cut(s)	37, 930
BssMI	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
BssT1I	CCWWGG	1 cut(s)	37
Bst2UI	CCWGG	2 cut(s)	587, 865
Bst4CI	ACNGT	4 cut(s)	287, 604, 682, 778
Bst6I	CTCTTC	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	282
BstC8I	GCNNGC	5 cut(s)	379, 406, 451, 494, 498
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	3 cut(s)	198, 215, 835
BstKTI	GATC	6 cut(s)	7, 310, 388, 462, 678, 895
BstMAI	GTCTC	2 cut(s)	63, 252
BstMBI	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
BstMCI	CGRYCG	2 cut(s)	378, 462
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 493
BstNI	CCWGG	2 cut(s)	587, 865
BstNSI	RCATGY	2 cut(s)	155, 496
BstSCI	CCNGG	4 cut(s)	310, 585, 863, 930
BstSLI	GKGCMC	3 cut(s)	622, 645, 756
BstV1I	GCAGC	2 cut(s)	281, 336
BstX2I	RGATCY	2 cut(s)	4, 892
BstYI	RGATCY	2 cut(s)	4, 892
BstZI	CGGCCG	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	377, 969
BtgZI	GCGATG	2 cut(s)	100, 379
BtsCI	GGATG	3 cut(s)	198, 215, 835
BtsIMutI	CAGTG	5 cut(s)	292, 479, 700, 751, 754
Cac8I	GCNNGC	5 cut(s)	379, 406, 451, 494, 498
Cfr10I	RCCGGY	3 cut(s)	373, 377, 806
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	3 cut(s)	283, 878, 935
CviAII	CATG	5 cut(s)	152, 269, 493, 908, 954
CviQI	GTAC	3 cut(s)	283, 878, 935
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	6 cut(s)	6, 309, 387, 461, 677, 894
DpnII	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
EaeI	YGGCCR	1 cut(s)	375
EagI	CGGCCG	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	37
Eco31I	GGTCTC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	253
Eco52I	CGGCCG	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	585, 863
EcoT14I	CCWWGG	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	661
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	5 cut(s)	155, 272, 496, 911, 957
FatI	CATG	5 cut(s)	151, 268, 492, 907, 953
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	3 cut(s)	295, 325, 967
FokI	GGATG	3 cut(s)	185, 202, 842
Fsp4HI	GCNGC	3 cut(s)	295, 325, 967
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	3 cut(s)	295, 325, 967
HaeIII	GGCC	2 cut(s)	377, 969
HapII	CCGG	5 cut(s)	312, 374, 378, 807, 932
Hin1II	CATG	5 cut(s)	155, 272, 496, 911, 957
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HinfI	GANTC	8 cut(s)	23, 146, 265, 455, 479, 525, 582, 904
HpaII	CCGG	5 cut(s)	312, 374, 378, 807, 932
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	691
Hpy188I	TCNGA	5 cut(s)	30, 257, 339, 464, 738
Hpy188III	TCNNGA	5 cut(s)	305, 522, 673, 847, 1007
Hpy8I	GTNNAC	1 cut(s)	691
HpyAV	CCTTC	5 cut(s)	83, 459, 634, 862, 956
HpyCH4III	ACNGT	4 cut(s)	287, 604, 682, 778
HpyCH4V	TGCA	6 cut(s)	272, 324, 492, 500, 659, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 493
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	5 cut(s)	155, 272, 496, 911, 957
KroI	GCCGGC	1 cut(s)	377
KroNI	GCCGGC	1 cut(s)	379
Kzo9I	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
LmnI	GCTCC	2 cut(s)	725, 988
Lsp1109I	GCAGC	2 cut(s)	281, 336
LweI	GCATC	1 cut(s)	668
MaeI	CTAG	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	230, 788
MalI	GATC	6 cut(s)	6, 309, 387, 461, 677, 894
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
MboII	GAAGA	4 cut(s)	78, 258, 359, 907
MflI	RGATCY	2 cut(s)	4, 892
MhlI	GDGCHC	3 cut(s)	622, 645, 756
MluCI	AATT	3 cut(s)	695, 817, 886
MlyI	GAGTC	3 cut(s)	140, 449, 898
MmeI	TCCRAC	3 cut(s)	317, 537, 703
Mph1103I	ATGCAT	1 cut(s)	661
MroNI	GCCGGC	1 cut(s)	377
MseI	TTAA	2 cut(s)	399, 684
MspI	CCGG	5 cut(s)	312, 374, 378, 807, 932
MspR9I	CCNGG	4 cut(s)	312, 587, 865, 932
Mva1269I	GAATGC	1 cut(s)	842
MvaI	CCWGG	2 cut(s)	587, 865
MwoI	GCNNNNNNNGC	2 cut(s)	321, 493
NaeI	GCCGGC	1 cut(s)	379
NciI	CCSGG	2 cut(s)	312, 932
NdeII	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
NgoMIV	GCCGGC	1 cut(s)	377
NlaIII	CATG	5 cut(s)	155, 272, 496, 911, 957
NlaIV	GGNNCC	7 cut(s)	172, 254, 470, 545, 621, 644, 990
NmuCI	GTSAC	2 cut(s)	230, 788
NsiI	ATGCAT	1 cut(s)	661
NspI	RCATGY	2 cut(s)	155, 496
PaeI	GCATGC	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	2 cut(s)	361, 433
PctI	GAATGC	1 cut(s)	842
PdiI	GCCGGC	1 cut(s)	379
PfeI	GAWTC	5 cut(s)	23, 265, 479, 525, 582
PflMI	CCANNNNNTGG	1 cut(s)	717
PfoI	TCCNGGA	1 cut(s)	585
PkrI	GCNGC	3 cut(s)	296, 326, 968
Ple19I	CGATCG	1 cut(s)	462
PleI	GAGTC	3 cut(s)	140, 449, 898
PpsI	GAGTC	3 cut(s)	140, 449, 898
Psp6I	CCWGG	2 cut(s)	585, 863
PspGI	CCWGG	2 cut(s)	585, 863
PspN4I	GGNNCC	7 cut(s)	172, 254, 470, 545, 621, 644, 990
PspPI	GGNCC	1 cut(s)	253
PsuI	RGATCY	2 cut(s)	4, 892
PvuI	CGATCG	1 cut(s)	462
RsaI	GTAC	3 cut(s)	284, 879, 936
RsaNI	GTAC	3 cut(s)	283, 878, 935
SalI	GTCGAC	1 cut(s)	689
SaqAI	TTAA	2 cut(s)	399, 684
SatI	GCNGC	3 cut(s)	295, 325, 967
Sau3AI	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	3 cut(s)	140, 449, 898
ScrFI	CCNGG	4 cut(s)	312, 587, 865, 932
SduI	GDGCHC	3 cut(s)	622, 645, 756
SfaNI	GCATC	1 cut(s)	668
SinI	GGWCC	1 cut(s)	253
SphI	GCATGC	1 cut(s)	496
Sse9I	AATT	3 cut(s)	695, 817, 886
SsiI	CCGC	2 cut(s)	83, 966
SspI	AATATT	1 cut(s)	611
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	4 cut(s)	310, 585, 863, 930
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	4 cut(s)	287, 604, 682, 778
TaqI	TCGA	4 cut(s)	306, 427, 458, 690
TasI	AATT	3 cut(s)	695, 817, 886
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	1 cut(s)	969
TfiI	GAWTC	5 cut(s)	23, 265, 479, 525, 582
Tru1I	TTAA	2 cut(s)	399, 684
Tru9I	TTAA	2 cut(s)	399, 684
TscAI	CASTG	5 cut(s)	292, 479, 707, 751, 761
TseFI	GTSAC	2 cut(s)	230, 788
TseI	GCWGC	2 cut(s)	294, 324
Tsp45I	GTSAC	2 cut(s)	230, 788
TspDTI	ATGAA	3 cut(s)	36, 546, 975
TspGWI	ACGGA	3 cut(s)	163, 908, 1001
TspRI	CASTG	5 cut(s)	292, 479, 707, 751, 761
Van91I	CCANNNNNTGG	1 cut(s)	717
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	2 cut(s)	817, 886
XbaI	TCTAGA	1 cut(s)	521
XceI	RCATGY	2 cut(s)	155, 496
XmiI	GTMKAC	1 cut(s)	690
XspI	CTAG	1 cut(s)	522
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.