Rmu_sc0008866.1_g000002

Protein trichome birefringence-like 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008866.1
OG0009484
Physical Location & Seq
Reverse (-)
4669 .. 6771
2103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008866.1_g000002.1.cds

Sequence Viewer

Length: 1107 bp
atggatcttcaaccctccaatgaatctcagaagccccaaggtttccccttttccatttttaccagaagagaccttcgttatccgctctgtttctttggtgtcctcgtctgttccatcgctattctcaatcttttcaccccatttgactcgcatgttatatctcgtttgggttccgtatattcccaaatcctaccagacattcacaaatcatcatcatcctctggcacttgtgactactcctatggaagatgggtccgagacaagaatcatgcacttcagttgtacagtgagagctgcccgtttctcgatcccggctttcggtgcagccagagtggtcggaaagacgaaggttatcgtcaatggcgatggcaaccggccggctgtgatcttttgaggtttaacgcaagcgacttcttggagagaagtcgaaatggacgaatagtgtttgctggcgactcgatcggaaggaaccagtgggaatctttgctgtgcatgcttgcagaagcagtatccaacaagtctagaatctatgaagtaaatgggaaccccattacaaaacacacaggttttctatcaatgcgattccaggactacaacctcacagttgaatattacagggcaccctttcttgtggtcgtagggcacccaactcaaaatgcatcaagccaagtcaggatcacagttaaggtcgaccaattccactggttttccaaacattgggttggagcagatgttctgattttcagtgcagggcactggtggaacgaggagaaaacagtaaggatgaatggcacatggaatgaaggcggcctgtgtgatacctttacggagccagaaagttctcatcttgaacctgacccagtgaataatctatacatatctgaggcaatcaaacagatggaatatgaaaactggaaggtccagttcttaaacatcacttatctaacagagttcaggtatgatggtcacccttcaaagtatcgtgaaccagggactccagcggatgctccacaagactgcagccactggtgcctacctggagtgcctgacacatggaatcaacttatttatggaaatctacaggcaaaaggattcagaaccaagtaa

Protein Analysis

368

Amino Acids

42.41

Weight (kDa)

6.6

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11570 AT5G06230 AT5G06230 AT5G06230
fragaria_vesca FvH4_6g19550 FvH4_6g19550 FvH4_6g19550 FvH4_6g19550
malus_domestica MD12G1031900.v1.1 MD14G1032200.v1.1
prunus_persica Prupe.7G100700_v2.0.a1
pyrus_communis pycom12g02960
rosa_chinensis RchiOBHm_Chr3g0474891
rosa_laevigata RLG00000023883
rosa_multiflora Rmu_sc0008866.1_g000002
rosa_roxburghii Rroxscaffold_6G00406760
rosa_rugosa Rorug03G0145200
rosa_samantha Rh3AG194800 Rh3BG224700 Rh3CG219700 Rh3DG220300
rosa_wichuraiana Rw3G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 619, 642, 1029
AccB7I CCANNNNNTGG 1 cut(s) 717
AccBSI CCGCTC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 690
AciI CCGC 3 cut(s) 83, 807, 1001
AclWI GGATC 3 cut(s) 12, 302, 683
AcoI YGGCCR 1 cut(s) 375
AcuI CTGAAG 1 cut(s) 260
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 318, 717
AgsI TTSAA 4 cut(s) 11, 608, 851, 975
AjnI CCWGG 3 cut(s) 585, 988, 1036
AloI GAACNNNNNNTCC 2 cut(s) 717, 749
AluBI AGCT 1 cut(s) 294
AluI AGCT 1 cut(s) 294
Alw26I GTCTC 2 cut(s) 63, 252
AlwI GGATC 3 cut(s) 12, 302, 683
AlwNI CAGNNNCTG 1 cut(s) 1026
AoxI GGCC 2 cut(s) 375, 808
ApeKI GCWGC 3 cut(s) 294, 324, 1020
AspS9I GGNCC 2 cut(s) 253, 919
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 2 cut(s) 127, 959
AvaII GGWCC 2 cut(s) 253, 919
BaeGI GKGCMC 3 cut(s) 622, 645, 756
BanI GGYRCC 3 cut(s) 619, 642, 1029
BbvI GCAGC 3 cut(s) 281, 336, 1032
BccI CCATC 5 cut(s) 122, 243, 360, 892, 956
BciT130I CCWGG 3 cut(s) 587, 990, 1038
BciVI GTATCC 1 cut(s) 520
BcnI CCSGG 1 cut(s) 312
BcoDI GTCTC 2 cut(s) 63, 252
BfaI CTAG 1 cut(s) 522
BfmI CTRYAG 2 cut(s) 1018, 1079
BfuI GTATCC 1 cut(s) 520
BisI GCNGC 4 cut(s) 295, 325, 808, 1021
BlsI GCNGC 4 cut(s) 296, 326, 809, 1022
Bme1390I CCNGG 4 cut(s) 312, 587, 990, 1038
Bme18I GGWCC 2 cut(s) 253, 919
BmgT120I GGNCC 2 cut(s) 253, 919
BmiI GGNNCC 8 cut(s) 172, 254, 470, 545, 621, 644, 831, 1031
BmrFI CCNGG 4 cut(s) 312, 587, 990, 1038
BmrI ACTGGG 1 cut(s) 854
BmsI GCATC 2 cut(s) 668, 994
BmuI ACTGGG 1 cut(s) 854
BpmI CTGGAG 2 cut(s) 981, 1059
BpuMI CCSGG 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 37, 989
BsaXI ACNNNNNCTCC 2 cut(s) 717, 747
Bsc4I CCNNNNNNNGG 2 cut(s) 318, 717
Bse118I RCCGGY 2 cut(s) 373, 377
Bse1I ACTGG 7 cut(s) 472, 707, 761, 860, 917, 922, 1031
BseBI CCWGG 3 cut(s) 587, 990, 1038
BseDI CCNNGG 2 cut(s) 37, 989
BseGI GGATG 3 cut(s) 215, 789, 1009
BseLI CCNNNNNNNGG 2 cut(s) 318, 717
BseMII CTCAG 2 cut(s) 41, 873
BseNI ACTGG 7 cut(s) 472, 707, 761, 860, 917, 922, 1031
BseRI GAGGAG 1 cut(s) 782
BseSI GKGCMC 3 cut(s) 622, 645, 756
BseX3I CGGCCG 1 cut(s) 375
BseXI GCAGC 3 cut(s) 281, 336, 1032
BsgI GTGCAG 2 cut(s) 343, 768
Bsh1285I CGRYCG 2 cut(s) 378, 462
BshFI GGCC 2 cut(s) 377, 810
BshNI GGYRCC 3 cut(s) 619, 642, 1029
BsiEI CGRYCG 2 cut(s) 378, 462
BsiSI CCGG 3 cut(s) 312, 374, 378
BslFI GGGAC 1 cut(s) 1006
BslI CCNNNNNNNGG 2 cut(s) 318, 717
BsmAI GTCTC 2 cut(s) 63, 252
BsmFI GGGAC 1 cut(s) 1006
BsnI GGCC 2 cut(s) 377, 810
Bso31I GGTCTC 1 cut(s) 63
Bsp1286I GDGCHC 3 cut(s) 622, 645, 756
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 5 cut(s) 4, 307, 385, 459, 675
BspACI CCGC 3 cut(s) 83, 807, 1001
BspANI GGCC 2 cut(s) 377, 810
BspCNI CTCAG 2 cut(s) 40, 874
BspLI GGNNCC 8 cut(s) 172, 254, 470, 545, 621, 644, 831, 1031
BspMAI CTGCAG 1 cut(s) 1022
BspPI GGATC 3 cut(s) 12, 302, 683
BspT107I GGYRCC 3 cut(s) 619, 642, 1029
BspTNI GGTCTC 1 cut(s) 63
BsrBI CCGCTC 1 cut(s) 85
BsrFI RCCGGY 2 cut(s) 373, 377
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 7 cut(s) 472, 707, 761, 860, 917, 922, 1031
BssAI RCCGGY 2 cut(s) 373, 377
BssECI CCNNGG 2 cut(s) 37, 989
BssMI GATC 5 cut(s) 4, 307, 385, 459, 675
BssT1I CCWWGG 1 cut(s) 37
Bst2UI CCWGG 3 cut(s) 587, 990, 1038
Bst4CI ACNGT 4 cut(s) 287, 604, 682, 778
Bst6I CTCTTC 1 cut(s) 61
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 5 cut(s) 379, 406, 451, 494, 498
BstDEI CTNAG 2 cut(s) 27, 882
BstEII GGTNACC 1 cut(s) 965
BstF5I GGATG 3 cut(s) 215, 789, 1009
BstKTI GATC 5 cut(s) 7, 310, 388, 462, 678
BstMAI GTCTC 2 cut(s) 63, 252
BstMBI GATC 5 cut(s) 4, 307, 385, 459, 675
BstMCI CGRYCG 2 cut(s) 378, 462
BstMWI GCNNNNNNNGC 3 cut(s) 321, 493, 1029
BstNI CCWGG 3 cut(s) 587, 990, 1038
BstNSI RCATGY 2 cut(s) 155, 496
BstPI GGTNACC 1 cut(s) 965
BstSCI CCNGG 4 cut(s) 310, 585, 988, 1036
BstSFI CTRYAG 2 cut(s) 1018, 1079
BstSLI GKGCMC 3 cut(s) 622, 645, 756
BstV1I GCAGC 3 cut(s) 281, 336, 1032
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BstZI CGGCCG 1 cut(s) 375
BsuI GTATCC 1 cut(s) 520
BsuRI GGCC 2 cut(s) 377, 810
BtgZI GCGATG 2 cut(s) 100, 379
BtsCI GGATG 3 cut(s) 215, 789, 1009
BtsIMutI CAGTG 7 cut(s) 292, 479, 700, 751, 754, 867, 1024
Cac8I GCNNGC 5 cut(s) 379, 406, 451, 494, 498
CaiI CAGNNNCTG 1 cut(s) 1026
Cfr10I RCCGGY 2 cut(s) 373, 377
Cfr13I GGNCC 2 cut(s) 253, 919
Csp6I GTAC 1 cut(s) 283
CviAII CATG 5 cut(s) 152, 269, 493, 795, 1053
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 2 cut(s) 27, 882
DpnI GATC 5 cut(s) 6, 309, 387, 461, 677
DpnII GATC 5 cut(s) 4, 307, 385, 459, 675
EaeI YGGCCR 1 cut(s) 375
EagI CGGCCG 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
EclXI CGGCCG 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 37
Eco31I GGTCTC 1 cut(s) 63
Eco47I GGWCC 2 cut(s) 253, 919
Eco52I CGGCCG 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 260
Eco91I GGTNACC 1 cut(s) 965
EcoO65I GGTNACC 1 cut(s) 965
EcoRII CCWGG 3 cut(s) 585, 988, 1036
EcoT14I CCWWGG 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 661
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 5 cut(s) 155, 272, 496, 798, 1056
FaqI GGGAC 1 cut(s) 1006
FatI CATG 5 cut(s) 151, 268, 492, 794, 1052
FblI GTMKAC 1 cut(s) 690
Fnu4HI GCNGC 4 cut(s) 295, 325, 808, 1021
FokI GGATG 3 cut(s) 202, 796, 1016
Fsp4HI GCNGC 4 cut(s) 295, 325, 808, 1021
FspBI CTAG 1 cut(s) 522
GluI GCNGC 4 cut(s) 295, 325, 808, 1021
GsuI CTGGAG 2 cut(s) 981, 1059
HaeIII GGCC 2 cut(s) 377, 810
HapII CCGG 3 cut(s) 312, 374, 378
Hin1II CATG 5 cut(s) 155, 272, 496, 798, 1056
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HpaII CCGG 3 cut(s) 312, 374, 378
HphI GGTGA 2 cut(s) 127, 959
Hpy166II GTNNAC 2 cut(s) 691, 986
Hpy188I TCNGA 7 cut(s) 30, 257, 339, 464, 738, 883, 1097
Hpy188III TCNNGA 5 cut(s) 305, 522, 673, 848, 983
Hpy8I GTNNAC 2 cut(s) 691, 986
HpyAV CCTTC 6 cut(s) 83, 341, 459, 797, 910, 981
HpyCH4III ACNGT 4 cut(s) 287, 604, 682, 778
HpyCH4V TGCA 7 cut(s) 272, 324, 492, 500, 659, 749, 1020
HpyF10VI GCNNNNNNNGC 3 cut(s) 321, 493, 1029
HpyF3I CTNAG 2 cut(s) 27, 882
Hsp92II CATG 5 cut(s) 155, 272, 496, 798, 1056
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
Kzo9I GATC 5 cut(s) 4, 307, 385, 459, 675
LmnI GCTCC 3 cut(s) 725, 829, 1012
Lsp1109I GCAGC 3 cut(s) 281, 336, 1032
LweI GCATC 2 cut(s) 668, 994
MaeI CTAG 1 cut(s) 522
MaeIII GTNAC 2 cut(s) 230, 965
MalI GATC 5 cut(s) 6, 309, 387, 461, 677
MbiI CCGCTC 1 cut(s) 85
MboI GATC 5 cut(s) 4, 307, 385, 459, 675
MboII GAAGA 2 cut(s) 78, 258
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 622, 645, 756
MluCI AATT 1 cut(s) 695
MlyI GAGTC 3 cut(s) 140, 449, 988
MmeI TCCRAC 3 cut(s) 317, 537, 703
MnlI CCTC 7 cut(s) 25, 113, 229, 387, 608, 760, 877
Mph1103I ATGCAT 1 cut(s) 661
MroNI GCCGGC 1 cut(s) 377
MseI TTAA 3 cut(s) 399, 684, 929
MspA1I CMGCKG 1 cut(s) 1001
MspI CCGG 3 cut(s) 312, 374, 378
MspR9I CCNGG 4 cut(s) 312, 587, 990, 1038
MvaI CCWGG 3 cut(s) 587, 990, 1038
MwoI GCNNNNNNNGC 3 cut(s) 321, 493, 1029
NaeI GCCGGC 1 cut(s) 379
NciI CCSGG 1 cut(s) 312
NdeII GATC 5 cut(s) 4, 307, 385, 459, 675
NgoMIV GCCGGC 1 cut(s) 377
NlaIII CATG 5 cut(s) 155, 272, 496, 798, 1056
NlaIV GGNNCC 8 cut(s) 172, 254, 470, 545, 621, 644, 831, 1031
NmuCI GTSAC 2 cut(s) 230, 965
NsiI ATGCAT 1 cut(s) 661
NspI RCATGY 2 cut(s) 155, 496
PaeI GCATGC 1 cut(s) 496
PcsI WCGNNNNNNNCGW 2 cut(s) 361, 433
PdiI GCCGGC 1 cut(s) 379
PfeI GAWTC 7 cut(s) 23, 265, 479, 525, 582, 1057, 1092
PflMI CCANNNNNTGG 1 cut(s) 717
PfoI TCCNGGA 1 cut(s) 585
PkrI GCNGC 4 cut(s) 296, 326, 809, 1022
Ple19I CGATCG 1 cut(s) 462
PleI GAGTC 3 cut(s) 140, 449, 988
PpsI GAGTC 3 cut(s) 140, 449, 988
Psp6I CCWGG 3 cut(s) 585, 988, 1036
PspEI GGTNACC 1 cut(s) 965
PspGI CCWGG 3 cut(s) 585, 988, 1036
PspN4I GGNNCC 8 cut(s) 172, 254, 470, 545, 621, 644, 831, 1031
PspPI GGNCC 2 cut(s) 253, 919
PstI CTGCAG 1 cut(s) 1022
PstNI CAGNNNCTG 1 cut(s) 1026
PsuI RGATCY 1 cut(s) 4
PvuI CGATCG 1 cut(s) 462
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SalI GTCGAC 1 cut(s) 689
SaqAI TTAA 3 cut(s) 399, 684, 929
SatI GCNGC 4 cut(s) 295, 325, 808, 1021
Sau3AI GATC 5 cut(s) 4, 307, 385, 459, 675
Sau96I GGNCC 2 cut(s) 253, 919
SchI GAGTC 3 cut(s) 140, 449, 988
ScrFI CCNGG 4 cut(s) 312, 587, 990, 1038
SduI GDGCHC 3 cut(s) 622, 645, 756
SfaNI GCATC 2 cut(s) 668, 994
SfcI CTRYAG 2 cut(s) 1018, 1079
SinI GGWCC 2 cut(s) 253, 919
SphI GCATGC 1 cut(s) 496
Sse9I AATT 1 cut(s) 695
SsiI CCGC 3 cut(s) 83, 807, 1001
SspI AATATT 1 cut(s) 611
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 4 cut(s) 310, 585, 988, 1036
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 4 cut(s) 287, 604, 682, 778
TaqI TCGA 4 cut(s) 306, 427, 458, 690
TasI AATT 1 cut(s) 695
TatI WGTACW 1 cut(s) 282
TauI GCSGC 1 cut(s) 810
TfiI GAWTC 7 cut(s) 23, 265, 479, 525, 582, 1057, 1092
Tru1I TTAA 3 cut(s) 399, 684, 929
Tru9I TTAA 3 cut(s) 399, 684, 929
TscAI CASTG 7 cut(s) 292, 479, 707, 751, 761, 867, 1031
TseFI GTSAC 2 cut(s) 230, 965
TseI GCWGC 3 cut(s) 294, 324, 1020
Tsp45I GTSAC 2 cut(s) 230, 965
TspDTI ATGAA 5 cut(s) 36, 546, 800, 816, 921
TspGWI ACGGA 2 cut(s) 163, 842
TspRI CASTG 7 cut(s) 292, 479, 707, 751, 761, 867, 1031
Van91I CCANNNNNTGG 1 cut(s) 717
VpaK11BI GGWCC 2 cut(s) 253, 919
XbaI TCTAGA 1 cut(s) 521
XceI RCATGY 2 cut(s) 155, 496
XmiI GTMKAC 1 cut(s) 690
XspI CTAG 1 cut(s) 522
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.