Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009484

Physical Location & Seq

Genomic Coordinates Reverse (-)

13073350 .. 13075924

Gene Structure 2575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19550.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGATCTTGAACCCTCCAATCAATCTCAGAATCCCCAACATTTCCCCCTTTCTCTATTCACCAGAAGGGACCTTCGTTTTGCTCTCTCTTTCTTCGGTGTCTTAGTCTGTTCCATCGCTATTCTCAATGTTTTCATCCCATTTGACTCGCAGTTTGTATCTCGTTTGGGTTCCTTGTATTCCCAAATCCTACCAGAGGTTCACAAACCGTCATCGTCCTTGGTAACTTGTGACTACTCCTATGGAAGATGGGTCCGAGACAAGAACCATCCACCTCAGTTGTACAGTGAGAGCTGCCCGTTTCTCGATCCCGGCTTTCGGTGCAGCCAGAGTGGACGGAAAGACGAGGATTACCGTCAATGGCGATGGCAACCGGCGGGATGTGATCTTTTGAGGTTTAACGCAAGTGACTTCTTGGAGAGAAGCCGGAATGGACGAATAGTGTTTGCCGGTGACTCGATCGGAAGGAACCAGTGGGAATCTTTGCTGTGCATGCTTGCAGAAGCAGTAGCCAACAAGTCTAGAATCTATGAAGTAAATGGGAACCCCATTACAAAGCACAAAGGTTTCCTCTCCATGCGATTCCAGGACTACAACCTCACAGTTGAATATTACAGGGCACCCTTCCTCGTCCCTGTAGGGCATCCATTTCAAAATGCACCAAGCCAAGTCAGGACCACAATTAAGCTTGACCAATTCCACTGGTTCTCCAAGCACTGGGTTGGAGCAGATGTTCTTATTTTCAGTGCAGGGCACTGGTGGAACGAGGACAAAACAGTAAGGATAGGCTGCTACTTCGAGGAAGCCGGTAAAGTGAATTTGACAATGGATGTGATGGAAGCATTCAGGAGGTCGTTGCAAACCTGGAAGACTTGGGTACTAAAGAATTTGGACCCTCAAAGGACTCATGTTTTCTTCCGTAGCTACTCCCCAGTACATTACAGGAATGGCACATGGAATGAAGGCGGGCTGTGTGATACCTTTAAGGAGCCAGAAAGAGACCAGAAACATCTTGAACCTGACCCAGAGAATAATCTATACATATCTGAAGCAATCAAACAGATGGAATATGAAAACTGGAAGGTCCAGTTCTTAAACATCACTTATCTAACAGAAATTAGGTATGATGGCCACCCTTCAAAATATCGTGAACCAGGGACTCCAGCAGATGCTCCACAAGACTGCAGCCATTGGTGCCTACCTGGAGTACCTGACACATGGAATCAACTTATTTATGGAAATCTTCAGGCAAAAGGATTCAGGAGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

424

Amino Acids

49.4

Weight (kDa)

7.6

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	76 - 129	1.2e-18	PMR5 N terminal Domain
PC-Esterase	PF13839	132 - 316	4.1e-59	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11570 AT5G06230 AT5G06230 AT5G06230
fragaria_vesca	FvH4_6g19550 FvH4_6g19550 FvH4_6g19550 FvH4_6g19550
malus_domestica	MD12G1031900.v1.1 MD14G1032200.v1.1
prunus_persica	Prupe.7G100700_v2.0.a1
pyrus_communis	pycom12g02960
rosa_chinensis	RchiOBHm_Chr3g0474891
rosa_laevigata	RLG00000023883
rosa_multiflora	Rmu_sc0008866.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406760
rosa_rugosa	Rorug03G0145200
rosa_samantha	Rh3AG194800 Rh3BG224700 Rh3CG219700 Rh3DG220300
rosa_wichuraiana	Rw3G017730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	619, 1194
AccB7I	CCANNNNNTGG	1 cut(s)	717
AciI	CCGC	2 cut(s)	377, 966
AclWI	GGATC	2 cut(s)	12, 302
AcoI	YGGCCR	1 cut(s)	1129
AcsI	RAATTY	2 cut(s)	817, 886
AcuI	CTGAAG	2 cut(s)	1068, 1229
AfaI	GTAC	4 cut(s)	284, 879, 936, 1209
AfiI	CCNNNNNNNGG	3 cut(s)	196, 318, 717
AgsI	TTSAA	5 cut(s)	11, 608, 653, 1016, 1140
AjnI	CCWGG	4 cut(s)	585, 863, 1153, 1201
AloI	GAACNNNNNNTCC	2 cut(s)	717, 749
AluBI	AGCT	3 cut(s)	294, 688, 924
AluI	AGCT	3 cut(s)	294, 688, 924
Alw26I	GTCTC	2 cut(s)	252, 993
AlwI	GGATC	2 cut(s)	12, 302
AoxI	GGCC	1 cut(s)	1129
ApeKI	GCWGC	4 cut(s)	294, 324, 789, 1185
ApoI	RAATTY	2 cut(s)	817, 886
ArsI	GACNNNNNNTTYG	4 cut(s)	62, 94, 137, 169
AspS9I	GGNCC	5 cut(s)	70, 253, 675, 892, 1084
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	2 cut(s)	52, 464
AvaII	GGWCC	5 cut(s)	70, 253, 675, 892, 1084
BaeGI	GKGCMC	2 cut(s)	622, 756
BalI	TGGCCA	1 cut(s)	1131
BanI	GGYRCC	2 cut(s)	619, 1194
BbsI	GAAGAC	1 cut(s)	875
BbvI	GCAGC	4 cut(s)	281, 336, 776, 1197
BccI	CCATC	7 cut(s)	122, 243, 276, 360, 829, 1057, 1121
BciT130I	CCWGG	4 cut(s)	587, 865, 1155, 1203
BcnI	CCSGG	1 cut(s)	312
BcoDI	GTCTC	2 cut(s)	252, 993
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	2 cut(s)	636, 1183
BisI	GCNGC	4 cut(s)	295, 325, 790, 1186
BlsI	GCNGC	4 cut(s)	296, 326, 791, 1187
Bme1390I	CCNGG	5 cut(s)	312, 587, 865, 1155, 1203
Bme18I	GGWCC	5 cut(s)	70, 253, 675, 892, 1084
BmgT120I	GGNCC	5 cut(s)	70, 253, 675, 892, 1084
BmiI	GGNNCC	9 cut(s)	71, 172, 254, 470, 545, 621, 894, 990, 1196
BmrFI	CCNGG	5 cut(s)	312, 587, 865, 1155, 1203
BmrI	ACTGGG	2 cut(s)	727, 926
BmsI	GCATC	2 cut(s)	652, 1159
BmuI	ACTGGG	2 cut(s)	727, 926
BpiI	GAAGAC	1 cut(s)	875
BpmI	CTGGAG	2 cut(s)	1146, 1224
BpuMI	CCSGG	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	993
BsaJI	CCNNGG	2 cut(s)	219, 1154
BsaXI	ACNNNNNCTCC	4 cut(s)	692, 717, 722, 747
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 318, 717
Bse118I	RCCGGY	3 cut(s)	373, 449, 806
Bse1I	ACTGG	7 cut(s)	472, 707, 722, 761, 932, 1082, 1087
BseBI	CCWGG	4 cut(s)	587, 865, 1155, 1203
BseDI	CCNNGG	2 cut(s)	219, 1154
BseGI	GGATG	5 cut(s)	135, 268, 386, 643, 835
BseLI	CCNNNNNNNGG	3 cut(s)	196, 318, 717
BseMII	CTCAG	2 cut(s)	41, 290
BseNI	ACTGG	7 cut(s)	472, 707, 722, 761, 932, 1082, 1087
BseSI	GKGCMC	2 cut(s)	622, 756
BseXI	GCAGC	4 cut(s)	281, 336, 776, 1197
BsgI	GTGCAG	2 cut(s)	343, 768
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	1131
BshNI	GGYRCC	2 cut(s)	619, 1194
BsiEI	CGRYCG	1 cut(s)	462
BsiSI	CCGG	5 cut(s)	312, 374, 427, 450, 807
BslFI	GGGAC	3 cut(s)	83, 617, 1171
BslI	CCNNNNNNNGG	3 cut(s)	196, 318, 717
BsmAI	GTCTC	2 cut(s)	252, 993
BsmFI	GGGAC	3 cut(s)	83, 617, 1171
BsmI	GAATGC	1 cut(s)	842
BsnI	GGCC	1 cut(s)	1131
Bso31I	GGTCTC	1 cut(s)	993
Bsp1286I	GDGCHC	2 cut(s)	622, 756
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	4 cut(s)	4, 307, 385, 459
BspACI	CCGC	2 cut(s)	377, 966
BspANI	GGCC	1 cut(s)	1131
BspCNI	CTCAG	2 cut(s)	40, 289
BspLI	GGNNCC	9 cut(s)	71, 172, 254, 470, 545, 621, 894, 990, 1196
BspMAI	CTGCAG	1 cut(s)	1187
BspPI	GGATC	2 cut(s)	12, 302
BspT107I	GGYRCC	2 cut(s)	619, 1194
BspTNI	GGTCTC	1 cut(s)	993
BsrFI	RCCGGY	3 cut(s)	373, 449, 806
BsrGI	TGTACA	1 cut(s)	282
BsrI	ACTGG	7 cut(s)	472, 707, 722, 761, 932, 1082, 1087
BssAI	RCCGGY	3 cut(s)	373, 449, 806
BssECI	CCNNGG	2 cut(s)	219, 1154
BssMI	GATC	4 cut(s)	4, 307, 385, 459
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	4 cut(s)	587, 865, 1155, 1203
Bst4CI	ACNGT	5 cut(s)	210, 287, 356, 604, 778
BstAUI	TGTACA	1 cut(s)	282
BstC8I	GCNNGC	3 cut(s)	494, 498, 968
BstDEI	CTNAG	3 cut(s)	27, 103, 276
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	5 cut(s)	135, 268, 386, 643, 835
BstKTI	GATC	4 cut(s)	7, 310, 388, 462
BstMAI	GTCTC	2 cut(s)	252, 993
BstMBI	GATC	4 cut(s)	4, 307, 385, 459
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 493, 1194
BstNI	CCWGG	4 cut(s)	587, 865, 1155, 1203
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	5 cut(s)	310, 585, 863, 1153, 1201
BstSFI	CTRYAG	2 cut(s)	636, 1183
BstSLI	GKGCMC	2 cut(s)	622, 756
BstV1I	GCAGC	4 cut(s)	281, 336, 776, 1197
BstV2I	GAAGAC	1 cut(s)	875
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	1131
BtgZI	GCGATG	2 cut(s)	100, 379
BtsCI	GGATG	5 cut(s)	135, 268, 386, 643, 835
BtsIMutI	CAGTG	6 cut(s)	292, 479, 700, 715, 751, 754
Cac8I	GCNNGC	3 cut(s)	494, 498, 968
Cfr10I	RCCGGY	3 cut(s)	373, 449, 806
Cfr13I	GGNCC	5 cut(s)	70, 253, 675, 892, 1084
Csp6I	GTAC	4 cut(s)	283, 878, 935, 1208
CspCI	CAANNNNNGTGG	2 cut(s)	261, 296
CviAII	CATG	5 cut(s)	493, 577, 908, 954, 1218
CviQI	GTAC	4 cut(s)	283, 878, 935, 1208
DdeI	CTNAG	3 cut(s)	27, 103, 276
DpnI	GATC	4 cut(s)	6, 309, 387, 461
DpnII	GATC	4 cut(s)	4, 307, 385, 459
EaeI	YGGCCR	1 cut(s)	1129
Eco130I	CCWWGG	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	993
Eco47I	GGWCC	5 cut(s)	70, 253, 675, 892, 1084
Eco57I	CTGAAG	2 cut(s)	1068, 1229
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRII	CCWGG	4 cut(s)	585, 863, 1153, 1201
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	5 cut(s)	496, 580, 911, 957, 1221
FaqI	GGGAC	3 cut(s)	83, 617, 1171
FatI	CATG	5 cut(s)	492, 576, 907, 953, 1217
FauI	CCCGC	2 cut(s)	370, 959
Fnu4HI	GCNGC	4 cut(s)	295, 325, 790, 1186
FokI	GGATG	5 cut(s)	122, 255, 393, 630, 842
Fsp4HI	GCNGC	4 cut(s)	295, 325, 790, 1186
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	4 cut(s)	295, 325, 790, 1186
GsuI	CTGGAG	2 cut(s)	1146, 1224
HaeIII	GGCC	1 cut(s)	1131
HapII	CCGG	5 cut(s)	312, 374, 427, 450, 807
Hin1II	CATG	5 cut(s)	496, 580, 911, 957, 1221
HindIII	AAGCTT	1 cut(s)	686
HpaII	CCGG	5 cut(s)	312, 374, 427, 450, 807
HphI	GGTGA	2 cut(s)	52, 464
Hpy166II	GTNNAC	3 cut(s)	202, 335, 1151
Hpy188I	TCNGA	4 cut(s)	30, 257, 464, 1048
Hpy188III	TCNNGA	8 cut(s)	8, 305, 522, 673, 847, 1013, 1148, 1261
Hpy8I	GTNNAC	3 cut(s)	202, 335, 1151
HpyAV	CCTTC	7 cut(s)	60, 83, 459, 634, 956, 1075, 1146
HpyCH4III	ACNGT	5 cut(s)	210, 287, 356, 604, 778
HpyCH4V	TGCA	7 cut(s)	324, 492, 500, 659, 749, 859, 1185
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 493, 1194
HpyF3I	CTNAG	3 cut(s)	27, 103, 276
Hsp92II	CATG	5 cut(s)	496, 580, 911, 957, 1221
Kzo9I	GATC	4 cut(s)	4, 307, 385, 459
LmnI	GCTCC	4 cut(s)	725, 988, 1177, 1263
Lsp1109I	GCAGC	4 cut(s)	281, 336, 776, 1197
LweI	GCATC	2 cut(s)	652, 1159
MaeI	CTAG	1 cut(s)	522
MaeIII	GTNAC	4 cut(s)	223, 230, 407, 452
MalI	GATC	4 cut(s)	6, 309, 387, 461
MboI	GATC	4 cut(s)	4, 307, 385, 459
MboII	GAAGA	5 cut(s)	85, 258, 880, 907, 1235
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	622, 756
MlsI	TGGCCA	1 cut(s)	1131
MluCI	AATT	5 cut(s)	681, 695, 817, 886, 1116
MluNI	TGGCCA	1 cut(s)	1131
MlyI	GAGTC	4 cut(s)	140, 449, 898, 1153
MmeI	TCCRAC	1 cut(s)	703
Mox20I	TGGCCA	1 cut(s)	1131
MscI	TGGCCA	1 cut(s)	1131
MseI	TTAA	4 cut(s)	399, 684, 984, 1094
Msp20I	TGGCCA	1 cut(s)	1131
MspI	CCGG	5 cut(s)	312, 374, 427, 450, 807
MspR9I	CCNGG	5 cut(s)	312, 587, 865, 1155, 1203
Mva1269I	GAATGC	1 cut(s)	842
MvaI	CCWGG	4 cut(s)	587, 865, 1155, 1203
MwoI	GCNNNNNNNGC	3 cut(s)	321, 493, 1194
NciI	CCSGG	1 cut(s)	312
NdeII	GATC	4 cut(s)	4, 307, 385, 459
NlaIII	CATG	5 cut(s)	496, 580, 911, 957, 1221
NlaIV	GGNNCC	9 cut(s)	71, 172, 254, 470, 545, 621, 894, 990, 1196
NmuCI	GTSAC	3 cut(s)	230, 407, 452
NspI	RCATGY	1 cut(s)	496
PaeI	GCATGC	1 cut(s)	496
PctI	GAATGC	1 cut(s)	842
PfeI	GAWTC	6 cut(s)	31, 479, 525, 582, 1222, 1257
PflMI	CCANNNNNTGG	1 cut(s)	717
PfoI	TCCNGGA	1 cut(s)	585
PkrI	GCNGC	4 cut(s)	296, 326, 791, 1187
Ple19I	CGATCG	1 cut(s)	462
PleI	GAGTC	4 cut(s)	140, 449, 898, 1153
PpsI	GAGTC	4 cut(s)	140, 449, 898, 1153
PpuMI	RGGWCCY	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	4 cut(s)	585, 863, 1153, 1201
PspGI	CCWGG	4 cut(s)	585, 863, 1153, 1201
PspN4I	GGNNCC	9 cut(s)	71, 172, 254, 470, 545, 621, 894, 990, 1196
PspPI	GGNCC	5 cut(s)	70, 253, 675, 892, 1084
PspPPI	RGGWCCY	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	1187
PsuI	RGATCY	1 cut(s)	4
PvuI	CGATCG	1 cut(s)	462
RsaI	GTAC	4 cut(s)	284, 879, 936, 1209
RsaNI	GTAC	4 cut(s)	283, 878, 935, 1208
SaqAI	TTAA	4 cut(s)	399, 684, 984, 1094
SatI	GCNGC	4 cut(s)	295, 325, 790, 1186
Sau3AI	GATC	4 cut(s)	4, 307, 385, 459
Sau96I	GGNCC	5 cut(s)	70, 253, 675, 892, 1084
SchI	GAGTC	4 cut(s)	140, 449, 898, 1153
ScrFI	CCNGG	5 cut(s)	312, 587, 865, 1155, 1203
SduI	GDGCHC	2 cut(s)	622, 756
SfaNI	GCATC	2 cut(s)	652, 1159
SfcI	CTRYAG	2 cut(s)	636, 1183
SinI	GGWCC	5 cut(s)	70, 253, 675, 892, 1084
SphI	GCATGC	1 cut(s)	496
Sse9I	AATT	5 cut(s)	681, 695, 817, 886, 1116
SsiI	CCGC	2 cut(s)	377, 966
SspI	AATATT	1 cut(s)	611
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	5 cut(s)	310, 585, 863, 1153, 1201
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	5 cut(s)	210, 287, 356, 604, 778
TaqI	TCGA	3 cut(s)	306, 458, 798
TasI	AATT	5 cut(s)	681, 695, 817, 886, 1116
TatI	WGTACW	2 cut(s)	282, 934
TfiI	GAWTC	6 cut(s)	31, 479, 525, 582, 1222, 1257
Tru1I	TTAA	4 cut(s)	399, 684, 984, 1094
Tru9I	TTAA	4 cut(s)	399, 684, 984, 1094
TscAI	CASTG	6 cut(s)	292, 479, 707, 722, 751, 761
TseFI	GTSAC	3 cut(s)	230, 407, 452
TseI	GCWGC	4 cut(s)	294, 324, 789, 1185
Tsp45I	GTSAC	3 cut(s)	230, 407, 452
TspDTI	ATGAA	4 cut(s)	124, 546, 975, 1086
TspGWI	ACGGA	2 cut(s)	352, 908
TspRI	CASTG	6 cut(s)	292, 479, 707, 722, 751, 761
Van91I	CCANNNNNTGG	1 cut(s)	717
VpaK11BI	GGWCC	5 cut(s)	70, 253, 675, 892, 1084
XagI	CCTNNNNNAGG	1 cut(s)	194
XapI	RAATTY	2 cut(s)	817, 886
XbaI	TCTAGA	1 cut(s)	521
XceI	RCATGY	1 cut(s)	496
XspI	CTAG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.