Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009484

Physical Location & Seq

Genomic Coordinates Forward (+)

29530797 .. 29532922

Gene Structure 2126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGATCTTCAACCCTCCAATCAATCTCAGAAGCCCCAAGGTTTCCCCTTTTCCATTTTTACCAGAAGAGACCTTCGCTATCCGCTCTCTTTCTTCGGTGTCTTCGTCTGTTCCATCGCTATTCTCAATCTTTTCACCCCATTTGACTCGCATGTTATATCTCGTTTGGGTTCCTTATATTCCCAAATCCTACCAGACATTCACAAATCATCATCATCCTCTGGCACTTGTGACTACTTCTATGGAAGATGGGTCCGAGACAAGAATCATGCACTTCAGTTGTACAGTGAGAACTGCCCGTTTCTCGATCCTGGCTTTCGGTGCAGCCAGAGTGGTCGGAAAGACGAAGATTATCGTCAATGGCGATGGCAACCGGCCGGCTGTGATCTTTTGAGGTTTAACGCAAGCGACTTCTTGGAGAGAAGTCGAAATGGACGAATAGTGTTTGCTGGTGACTCGATCGGAAGGAATCAGTGGGAATCTTTGCTGTGCATGCTTGCAGAAGCAGTATCCAACAAGTCTAGAATCTATGAAGTAAATGGGAACCCCATTACAAAACACAGAGGTTTTCTATCAATGCGATTCCAGGACTACAACCTCACAGTTGAATATTACAGGGCACCCTTCCTTGTGGTCGTAGGGCACCCAACTCAAAATGCATCAAGCCAAGTCAGGATCACAGTTAAGGTCGACCAATTCCACTGGTTTTCCAAACATTGGGTTGGAGCAGATGTTCTGATTTTCAGTGCAGGGCACTGGTGGAACGAGGACAAAACAGTAAGGATAGGTCACTACTTCGAGGAAGCCGGTAAAGTGAATTTGACAATGGATGTGATGGAAGCATTCAGGAGGTCGTTGCAAACCTGGAAGGCGTGGGTACTGAAGAATTTAGATCCTCAAAGGACTCATGTTTTCTTCCGTAGCTACTCCCCAGTACATTACAGGAATGGCACATGGAATGAAGGCGGGCTGTGTGATACCTTTACGGAGCCAGAAAGAGACCACAAACATCTTGAACCTGACCCAGTGAATAATCTATACATATCTGAGGCAATCAAACAGATGGAATATGAAAACTGGAAGGTCCAGTTCTTAAACATCACTTATCTAACAGAGTTCAGGTATGATGGTCACCCTTCAAAGTATCGTGAACCAGGGACTCCAGCGGATGCTCCACAAGACTGCAGCCACTGGTGCCTACCTGGAGTGCCTGACACATGGAATCAACTTATTTATGGAAATCTACAGGCAAAAGGATTCAGAACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

424

Amino Acids

49.4

Weight (kDa)

8.28

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	76 - 129	6.6e-19	PMR5 N terminal Domain
PC-Esterase	PF13839	132 - 412	7.2e-94	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11570 AT5G06230 AT5G06230 AT5G06230
fragaria_vesca	FvH4_6g19550 FvH4_6g19550 FvH4_6g19550 FvH4_6g19550
malus_domestica	MD12G1031900.v1.1 MD14G1032200.v1.1
prunus_persica	Prupe.7G100700_v2.0.a1
pyrus_communis	pycom12g02960
rosa_chinensis	RchiOBHm_Chr3g0474891
rosa_laevigata	RLG00000023883
rosa_multiflora	Rmu_sc0008866.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406760
rosa_rugosa	Rorug03G0145200
rosa_samantha	Rh3AG194800 Rh3BG224700 Rh3CG219700 Rh3DG220300
rosa_wichuraiana	Rw3G017730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	619, 642, 1194
AccB7I	CCANNNNNTGG	1 cut(s)	717
AccBSI	CCGCTC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	690
AciI	CCGC	3 cut(s)	83, 966, 1166
AclWI	GGATC	4 cut(s)	12, 302, 683, 887
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	2 cut(s)	817, 886
AcuI	CTGAAG	2 cut(s)	260, 902
AfaI	GTAC	3 cut(s)	284, 879, 936
AfiI	CCNNNNNNNGG	1 cut(s)	717
AgsI	TTSAA	4 cut(s)	11, 608, 1016, 1140
AjnI	CCWGG	5 cut(s)	310, 585, 863, 1153, 1201
AloI	GAACNNNNNNTCC	2 cut(s)	717, 749
AluBI	AGCT	1 cut(s)	924
AluI	AGCT	1 cut(s)	924
Alw26I	GTCTC	3 cut(s)	63, 252, 993
AlwI	GGATC	4 cut(s)	12, 302, 683, 887
AlwNI	CAGNNNCTG	1 cut(s)	1191
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	324, 1185
ApoI	RAATTY	2 cut(s)	817, 886
AspS9I	GGNCC	2 cut(s)	253, 1084
AsuHPI	GGTGA	3 cut(s)	127, 464, 1124
AvaII	GGWCC	2 cut(s)	253, 1084
BaeGI	GKGCMC	3 cut(s)	622, 645, 756
BanI	GGYRCC	3 cut(s)	619, 642, 1194
BbsI	GAAGAC	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	336, 1197
BccI	CCATC	6 cut(s)	122, 243, 360, 829, 1057, 1121
BciT130I	CCWGG	5 cut(s)	312, 587, 865, 1155, 1203
BciVI	GTATCC	1 cut(s)	520
BcoDI	GTCTC	3 cut(s)	63, 252, 993
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	2 cut(s)	1183, 1244
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	2 cut(s)	325, 1186
BlsI	GCNGC	2 cut(s)	326, 1187
Bme1390I	CCNGG	5 cut(s)	312, 587, 865, 1155, 1203
Bme18I	GGWCC	2 cut(s)	253, 1084
BmgT120I	GGNCC	2 cut(s)	253, 1084
BmiI	GGNNCC	7 cut(s)	172, 254, 545, 621, 644, 990, 1196
BmrFI	CCNGG	5 cut(s)	312, 587, 865, 1155, 1203
BmrI	ACTGGG	2 cut(s)	926, 1019
BmsI	GCATC	2 cut(s)	668, 1159
BmuI	ACTGGG	2 cut(s)	926, 1019
BpiI	GAAGAC	1 cut(s)	94
BpmI	CTGGAG	2 cut(s)	1146, 1224
BsaI	GGTCTC	2 cut(s)	63, 993
BsaJI	CCNNGG	2 cut(s)	37, 1154
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	717
Bse118I	RCCGGY	3 cut(s)	373, 377, 806
Bse1I	ACTGG	7 cut(s)	707, 761, 932, 1025, 1082, 1087, 1196
BseBI	CCWGG	5 cut(s)	312, 587, 865, 1155, 1203
BseDI	CCNNGG	2 cut(s)	37, 1154
BseGI	GGATG	3 cut(s)	215, 835, 1174
BseLI	CCNNNNNNNGG	1 cut(s)	717
BseMII	CTCAG	2 cut(s)	41, 1038
BseNI	ACTGG	7 cut(s)	707, 761, 932, 1025, 1082, 1087, 1196
BseSI	GKGCMC	3 cut(s)	622, 645, 756
BseX3I	CGGCCG	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	336, 1197
BsgI	GTGCAG	2 cut(s)	343, 768
Bsh1285I	CGRYCG	2 cut(s)	378, 462
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	3 cut(s)	619, 642, 1194
BsiEI	CGRYCG	2 cut(s)	378, 462
BsiSI	CCGG	3 cut(s)	374, 378, 807
BslFI	GGGAC	1 cut(s)	1171
BslI	CCNNNNNNNGG	1 cut(s)	717
BsmAI	GTCTC	3 cut(s)	63, 252, 993
BsmFI	GGGAC	1 cut(s)	1171
BsmI	GAATGC	1 cut(s)	842
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	2 cut(s)	63, 993
Bsp1286I	GDGCHC	3 cut(s)	622, 645, 756
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
BspACI	CCGC	3 cut(s)	83, 966, 1166
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	2 cut(s)	40, 1039
BspLI	GGNNCC	7 cut(s)	172, 254, 545, 621, 644, 990, 1196
BspMAI	CTGCAG	1 cut(s)	1187
BspPI	GGATC	4 cut(s)	12, 302, 683, 887
BspT107I	GGYRCC	3 cut(s)	619, 642, 1194
BspTNI	GGTCTC	2 cut(s)	63, 993
BsrBI	CCGCTC	1 cut(s)	85
BsrFI	RCCGGY	3 cut(s)	373, 377, 806
BsrGI	TGTACA	1 cut(s)	282
BsrI	ACTGG	7 cut(s)	707, 761, 932, 1025, 1082, 1087, 1196
BssAI	RCCGGY	3 cut(s)	373, 377, 806
BssECI	CCNNGG	2 cut(s)	37, 1154
BssMI	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
BssT1I	CCWWGG	1 cut(s)	37
Bst2UI	CCWGG	5 cut(s)	312, 587, 865, 1155, 1203
Bst4CI	ACNGT	4 cut(s)	287, 604, 682, 778
Bst6I	CTCTTC	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	282
BstC8I	GCNNGC	5 cut(s)	379, 406, 494, 498, 968
BstDEI	CTNAG	2 cut(s)	27, 1047
BstEII	GGTNACC	1 cut(s)	1130
BstF5I	GGATG	3 cut(s)	215, 835, 1174
BstKTI	GATC	6 cut(s)	7, 310, 388, 462, 678, 895
BstMAI	GTCTC	3 cut(s)	63, 252, 993
BstMBI	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
BstMCI	CGRYCG	2 cut(s)	378, 462
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 493, 1194
BstNI	CCWGG	5 cut(s)	312, 587, 865, 1155, 1203
BstNSI	RCATGY	2 cut(s)	155, 496
BstPI	GGTNACC	1 cut(s)	1130
BstSCI	CCNGG	5 cut(s)	310, 585, 863, 1153, 1201
BstSFI	CTRYAG	2 cut(s)	1183, 1244
BstSLI	GKGCMC	3 cut(s)	622, 645, 756
BstV1I	GCAGC	2 cut(s)	336, 1197
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	2 cut(s)	4, 892
BstYI	RGATCY	2 cut(s)	4, 892
BstZI	CGGCCG	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	377
BtgZI	GCGATG	2 cut(s)	100, 379
BtsCI	GGATG	3 cut(s)	215, 835, 1174
BtsIMutI	CAGTG	7 cut(s)	292, 479, 700, 751, 754, 1032, 1189
Cac8I	GCNNGC	5 cut(s)	379, 406, 494, 498, 968
CaiI	CAGNNNCTG	1 cut(s)	1191
Cfr10I	RCCGGY	3 cut(s)	373, 377, 806
Cfr13I	GGNCC	2 cut(s)	253, 1084
Csp6I	GTAC	3 cut(s)	283, 878, 935
CviAII	CATG	6 cut(s)	152, 269, 493, 908, 954, 1218
CviQI	GTAC	3 cut(s)	283, 878, 935
DdeI	CTNAG	2 cut(s)	27, 1047
DpnI	GATC	6 cut(s)	6, 309, 387, 461, 677, 894
DpnII	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
EaeI	YGGCCR	1 cut(s)	375
EagI	CGGCCG	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	37
Eco31I	GGTCTC	2 cut(s)	63, 993
Eco47I	GGWCC	2 cut(s)	253, 1084
Eco52I	CGGCCG	1 cut(s)	375
Eco57I	CTGAAG	2 cut(s)	260, 902
Eco91I	GGTNACC	1 cut(s)	1130
EcoO65I	GGTNACC	1 cut(s)	1130
EcoRII	CCWGG	5 cut(s)	310, 585, 863, 1153, 1201
EcoT14I	CCWWGG	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	661
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	6 cut(s)	155, 272, 496, 911, 957, 1221
FaqI	GGGAC	1 cut(s)	1171
FatI	CATG	6 cut(s)	151, 268, 492, 907, 953, 1217
FauI	CCCGC	1 cut(s)	959
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	2 cut(s)	325, 1186
FokI	GGATG	3 cut(s)	202, 842, 1181
Fsp4HI	GCNGC	2 cut(s)	325, 1186
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	2 cut(s)	325, 1186
GsuI	CTGGAG	2 cut(s)	1146, 1224
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	3 cut(s)	374, 378, 807
Hin1II	CATG	6 cut(s)	155, 272, 496, 911, 957, 1221
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HpaII	CCGG	3 cut(s)	374, 378, 807
HphI	GGTGA	3 cut(s)	127, 464, 1124
Hpy166II	GTNNAC	2 cut(s)	691, 1151
Hpy188I	TCNGA	7 cut(s)	30, 257, 339, 464, 738, 1048, 1262
Hpy188III	TCNNGA	6 cut(s)	305, 522, 673, 847, 1013, 1148
Hpy8I	GTNNAC	2 cut(s)	691, 1151
HpyAV	CCTTC	7 cut(s)	83, 459, 634, 862, 956, 1075, 1146
HpyCH4III	ACNGT	4 cut(s)	287, 604, 682, 778
HpyCH4V	TGCA	8 cut(s)	272, 324, 492, 500, 659, 749, 859, 1185
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 493, 1194
HpyF3I	CTNAG	2 cut(s)	27, 1047
Hsp92II	CATG	6 cut(s)	155, 272, 496, 911, 957, 1221
KroI	GCCGGC	1 cut(s)	377
KroNI	GCCGGC	1 cut(s)	379
Kzo9I	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
LmnI	GCTCC	3 cut(s)	725, 988, 1177
Lsp1109I	GCAGC	2 cut(s)	336, 1197
LweI	GCATC	2 cut(s)	668, 1159
MaeI	CTAG	1 cut(s)	522
MaeIII	GTNAC	4 cut(s)	230, 452, 788, 1130
MalI	GATC	6 cut(s)	6, 309, 387, 461, 677, 894
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
MboII	GAAGA	7 cut(s)	78, 85, 94, 258, 359, 895, 907
MflI	RGATCY	2 cut(s)	4, 892
MhlI	GDGCHC	3 cut(s)	622, 645, 756
MluCI	AATT	3 cut(s)	695, 817, 886
MlyI	GAGTC	4 cut(s)	140, 449, 898, 1153
MmeI	TCCRAC	3 cut(s)	317, 537, 703
Mph1103I	ATGCAT	1 cut(s)	661
MroNI	GCCGGC	1 cut(s)	377
MseI	TTAA	3 cut(s)	399, 684, 1094
MspA1I	CMGCKG	1 cut(s)	1166
MspI	CCGG	3 cut(s)	374, 378, 807
MspR9I	CCNGG	5 cut(s)	312, 587, 865, 1155, 1203
Mva1269I	GAATGC	1 cut(s)	842
MvaI	CCWGG	5 cut(s)	312, 587, 865, 1155, 1203
MwoI	GCNNNNNNNGC	3 cut(s)	321, 493, 1194
NaeI	GCCGGC	1 cut(s)	379
NdeII	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
NgoMIV	GCCGGC	1 cut(s)	377
NlaIII	CATG	6 cut(s)	155, 272, 496, 911, 957, 1221
NlaIV	GGNNCC	7 cut(s)	172, 254, 545, 621, 644, 990, 1196
NmuCI	GTSAC	4 cut(s)	230, 452, 788, 1130
NsiI	ATGCAT	1 cut(s)	661
NspI	RCATGY	2 cut(s)	155, 496
PaeI	GCATGC	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 361, 433
PctI	GAATGC	1 cut(s)	842
PdiI	GCCGGC	1 cut(s)	379
PfeI	GAWTC	7 cut(s)	265, 469, 479, 525, 582, 1222, 1257
PflMI	CCANNNNNTGG	1 cut(s)	717
PfoI	TCCNGGA	1 cut(s)	585
PkrI	GCNGC	2 cut(s)	326, 1187
Ple19I	CGATCG	1 cut(s)	462
PleI	GAGTC	4 cut(s)	140, 449, 898, 1153
PpsI	GAGTC	4 cut(s)	140, 449, 898, 1153
Psp6I	CCWGG	5 cut(s)	310, 585, 863, 1153, 1201
PspEI	GGTNACC	1 cut(s)	1130
PspGI	CCWGG	5 cut(s)	310, 585, 863, 1153, 1201
PspN4I	GGNNCC	7 cut(s)	172, 254, 545, 621, 644, 990, 1196
PspPI	GGNCC	2 cut(s)	253, 1084
PstI	CTGCAG	1 cut(s)	1187
PstNI	CAGNNNCTG	1 cut(s)	1191
PsuI	RGATCY	2 cut(s)	4, 892
PvuI	CGATCG	1 cut(s)	462
RsaI	GTAC	3 cut(s)	284, 879, 936
RsaNI	GTAC	3 cut(s)	283, 878, 935
SalI	GTCGAC	1 cut(s)	689
SaqAI	TTAA	3 cut(s)	399, 684, 1094
SatI	GCNGC	2 cut(s)	325, 1186
Sau3AI	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
Sau96I	GGNCC	2 cut(s)	253, 1084
SchI	GAGTC	4 cut(s)	140, 449, 898, 1153
ScrFI	CCNGG	5 cut(s)	312, 587, 865, 1155, 1203
SduI	GDGCHC	3 cut(s)	622, 645, 756
SfaNI	GCATC	2 cut(s)	668, 1159
SfcI	CTRYAG	2 cut(s)	1183, 1244
SinI	GGWCC	2 cut(s)	253, 1084
SphI	GCATGC	1 cut(s)	496
Sse9I	AATT	3 cut(s)	695, 817, 886
SsiI	CCGC	3 cut(s)	83, 966, 1166
SspI	AATATT	1 cut(s)	611
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	5 cut(s)	310, 585, 863, 1153, 1201
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	4 cut(s)	287, 604, 682, 778
TaqI	TCGA	5 cut(s)	306, 427, 458, 690, 798
TasI	AATT	3 cut(s)	695, 817, 886
TatI	WGTACW	2 cut(s)	282, 934
TfiI	GAWTC	7 cut(s)	265, 469, 479, 525, 582, 1222, 1257
Tru1I	TTAA	3 cut(s)	399, 684, 1094
Tru9I	TTAA	3 cut(s)	399, 684, 1094
TscAI	CASTG	7 cut(s)	292, 479, 707, 751, 761, 1032, 1196
TseFI	GTSAC	4 cut(s)	230, 452, 788, 1130
TseI	GCWGC	2 cut(s)	324, 1185
Tsp45I	GTSAC	4 cut(s)	230, 452, 788, 1130
TspDTI	ATGAA	3 cut(s)	546, 975, 1086
TspGWI	ACGGA	2 cut(s)	908, 1001
TspRI	CASTG	7 cut(s)	292, 479, 707, 751, 761, 1032, 1196
Van91I	CCANNNNNTGG	1 cut(s)	717
VpaK11BI	GGWCC	2 cut(s)	253, 1084
XapI	RAATTY	2 cut(s)	817, 886
XbaI	TCTAGA	1 cut(s)	521
XceI	RCATGY	2 cut(s)	155, 496
XmiI	GTMKAC	1 cut(s)	690
XspI	CTAG	1 cut(s)	522
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.