Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0009484

Physical Location & Seq

Genomic Coordinates Reverse (-)

19459126 .. 19461234

Gene Structure 2109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G017730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGATCTTCAACCCTCCAATGAATCTCAGAAGCCCCAAGGTTTCCCCTTTTCCATTTTTACCAGAAGAGACCTTCGTTATCCGCTCTCTTTCTTTGGTGTCCTCGTCTGTTCCATCGCTATTCTCAATCTTTTCACCCCATTTGACTCGCATGTTATATCTCGTTTGGGTTCCCTATATTCCCAAATCCTACCAGACATTCACAAATCATCATCATCCTCTGGCACTTGTGACTACTCCTATGGAAGATGGGTCCGAGACAAGAATCATGCACTTCAGTTGTACAGTGAGGGCTGCCCGTTTCTCGATCCCGGCTTTCGGTGCAGCCAGAGTGGTCGGAAAGACGAAGGTTATCGTCAATGGCGATGGCAACCCGCCGGCTGTGATCTTTTGAGGTTTAACGCAAGCGACTTCTTGGAGAGAAGTCGAAATGGACGAATAGTGTTTGCTGGCGACTCGATCGGAAGGAACCAGTGGGAATCTTTGCTGTGCATGCTTGCAGAAGCAGTATCCAACAAGTCTAGAATCTATGAAGTAAATGGGAACCCCATTACAAAACACACAGGTTTTCTATCAATGCGATTCCAGGACTACAACCTCACAGTTGAATATTACAGGGCACCCTTCCTGGTGGTCGTAGGGCACCCAACTCAAAATGCATCAAGCCAAGTCAGGATCACAGTTAAGGTCGACCAATTCCACTGGTTTTCCAGACATTGGGTTGGAGCAGATGTTCTGATTTTCAGTGCAGGGCACTGGTGGAACGAGGAGAAAACAGTACGGATAGGTCACTACTTTGAGGAAGCCGGTAAAGTGAATTTGACAATGGATGTGATGGAGGCATTCAGGAGGTCGTTGAAAACCTGGAAGGCTTGGGTACTAAAGAATTTAGATCCTCAAAGGACTCATGTTTTCTTCCGTAGCTACTCCCCAGTACATTACAGGAATGGCACATGGAATGAAGGCGGCCTGTGTGATACCTTTACGGAGCCAGAAAGTTCTCATCTTGAACCTGACCCAGTGAATAATCTATACATATCTGAGGCAATCAAACAGATGGAATATGAAAACTGGAAGGTCCAGTTCTTAAACATCACTTATCTAACAGAGTTCAGGTATGATGGTCACCCTTCAAAGTATCGTGAACCAGGGACTCCAGCGGATGCTCCACAAGACTGCAGCCACTGGTGCCTACCTGGAGTGCCTGACACATGGAATCAACTTATTTATGGAAATCTACAGGCAAAAGGATTCAGAACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

421

Amino Acids

48.82

Weight (kDa)

8.02

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	76 - 129	4.4e-18	PMR5 N terminal Domain
PC-Esterase	PF13839	132 - 410	2e-93	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11570 AT5G06230 AT5G06230 AT5G06230
fragaria_vesca	FvH4_6g19550 FvH4_6g19550 FvH4_6g19550 FvH4_6g19550
malus_domestica	MD12G1031900.v1.1 MD14G1032200.v1.1
prunus_persica	Prupe.7G100700_v2.0.a1
pyrus_communis	pycom12g02960
rosa_chinensis	RchiOBHm_Chr3g0474891
rosa_laevigata	RLG00000023883
rosa_multiflora	Rmu_sc0008866.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406760
rosa_rugosa	Rorug03G0145200
rosa_samantha	Rh3AG194800 Rh3BG224700 Rh3CG219700 Rh3DG220300
rosa_wichuraiana	Rw3G017730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	619, 642, 1188
AccB7I	CCANNNNNTGG	1 cut(s)	717
AccBSI	CCGCTC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	690
AciI	CCGC	4 cut(s)	83, 375, 966, 1160
AclWI	GGATC	4 cut(s)	12, 302, 683, 887
AcsI	RAATTY	2 cut(s)	817, 886
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	4 cut(s)	284, 780, 879, 936
AfiI	CCNNNNNNNGG	2 cut(s)	318, 717
AgsI	TTSAA	5 cut(s)	11, 608, 859, 1010, 1134
AjnI	CCWGG	5 cut(s)	585, 627, 863, 1147, 1195
AloI	GAACNNNNNNTCC	2 cut(s)	717, 749
AluBI	AGCT	1 cut(s)	924
AluI	AGCT	1 cut(s)	924
Alw26I	GTCTC	2 cut(s)	63, 252
AlwI	GGATC	4 cut(s)	12, 302, 683, 887
AlwNI	CAGNNNCTG	1 cut(s)	1185
AoxI	GGCC	1 cut(s)	967
ApeKI	GCWGC	3 cut(s)	294, 324, 1179
ApoI	RAATTY	2 cut(s)	817, 886
AspS9I	GGNCC	2 cut(s)	253, 1078
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	2 cut(s)	127, 1118
AvaII	GGWCC	2 cut(s)	253, 1078
BaeGI	GKGCMC	3 cut(s)	622, 645, 756
BanI	GGYRCC	3 cut(s)	619, 642, 1188
BbvI	GCAGC	3 cut(s)	281, 336, 1191
BccI	CCATC	6 cut(s)	122, 243, 360, 829, 1051, 1115
BciT130I	CCWGG	5 cut(s)	587, 629, 865, 1149, 1197
BciVI	GTATCC	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	312
BcoDI	GTCTC	2 cut(s)	63, 252
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	2 cut(s)	1177, 1238
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	4 cut(s)	295, 325, 967, 1180
BlsI	GCNGC	4 cut(s)	296, 326, 968, 1181
Bme1390I	CCNGG	6 cut(s)	312, 587, 629, 865, 1149, 1197
Bme18I	GGWCC	2 cut(s)	253, 1078
BmgT120I	GGNCC	2 cut(s)	253, 1078
BmiI	GGNNCC	8 cut(s)	172, 254, 470, 545, 621, 644, 990, 1190
BmrFI	CCNGG	6 cut(s)	312, 587, 629, 865, 1149, 1197
BmrI	ACTGGG	2 cut(s)	926, 1013
BmsI	GCATC	2 cut(s)	668, 1153
BmuI	ACTGGG	2 cut(s)	926, 1013
BpmI	CTGGAG	2 cut(s)	1140, 1218
BpuMI	CCSGG	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	37, 1148
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 717
Bse118I	RCCGGY	2 cut(s)	377, 806
Bse1I	ACTGG	8 cut(s)	472, 707, 761, 932, 1019, 1076, 1081, 1190
BseBI	CCWGG	5 cut(s)	587, 629, 865, 1149, 1197
BseDI	CCNNGG	2 cut(s)	37, 1148
BseGI	GGATG	3 cut(s)	215, 835, 1168
BseLI	CCNNNNNNNGG	2 cut(s)	318, 717
BseMII	CTCAG	2 cut(s)	41, 1032
BseNI	ACTGG	8 cut(s)	472, 707, 761, 932, 1019, 1076, 1081, 1190
BseRI	GAGGAG	1 cut(s)	782
BseSI	GKGCMC	3 cut(s)	622, 645, 756
BseXI	GCAGC	3 cut(s)	281, 336, 1191
BsgI	GTGCAG	2 cut(s)	343, 768
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	969
BshNI	GGYRCC	3 cut(s)	619, 642, 1188
BsiEI	CGRYCG	1 cut(s)	462
BsiSI	CCGG	3 cut(s)	312, 378, 807
BslFI	GGGAC	1 cut(s)	1165
BslI	CCNNNNNNNGG	2 cut(s)	318, 717
BsmAI	GTCTC	2 cut(s)	63, 252
BsmFI	GGGAC	1 cut(s)	1165
BsmI	GAATGC	1 cut(s)	842
BsnI	GGCC	1 cut(s)	969
Bso31I	GGTCTC	1 cut(s)	63
Bsp1286I	GDGCHC	3 cut(s)	622, 645, 756
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
BspACI	CCGC	4 cut(s)	83, 375, 966, 1160
BspANI	GGCC	1 cut(s)	969
BspCNI	CTCAG	2 cut(s)	40, 1033
BspLI	GGNNCC	8 cut(s)	172, 254, 470, 545, 621, 644, 990, 1190
BspMAI	CTGCAG	1 cut(s)	1181
BspPI	GGATC	4 cut(s)	12, 302, 683, 887
BspT107I	GGYRCC	3 cut(s)	619, 642, 1188
BspTNI	GGTCTC	1 cut(s)	63
BsrBI	CCGCTC	1 cut(s)	85
BsrFI	RCCGGY	2 cut(s)	377, 806
BsrGI	TGTACA	1 cut(s)	282
BsrI	ACTGG	8 cut(s)	472, 707, 761, 932, 1019, 1076, 1081, 1190
BssAI	RCCGGY	2 cut(s)	377, 806
BssECI	CCNNGG	2 cut(s)	37, 1148
BssMI	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
BssT1I	CCWWGG	1 cut(s)	37
Bst2UI	CCWGG	5 cut(s)	587, 629, 865, 1149, 1197
Bst4CI	ACNGT	4 cut(s)	287, 604, 682, 778
Bst6I	CTCTTC	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	282
BstC8I	GCNNGC	5 cut(s)	379, 406, 451, 494, 498
BstDEI	CTNAG	2 cut(s)	27, 1041
BstEII	GGTNACC	1 cut(s)	1124
BstF5I	GGATG	3 cut(s)	215, 835, 1168
BstKTI	GATC	6 cut(s)	7, 310, 388, 462, 678, 895
BstMAI	GTCTC	2 cut(s)	63, 252
BstMBI	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 493, 1188
BstNI	CCWGG	5 cut(s)	587, 629, 865, 1149, 1197
BstNSI	RCATGY	2 cut(s)	155, 496
BstPI	GGTNACC	1 cut(s)	1124
BstSCI	CCNGG	6 cut(s)	310, 585, 627, 863, 1147, 1195
BstSFI	CTRYAG	2 cut(s)	1177, 1238
BstSLI	GKGCMC	3 cut(s)	622, 645, 756
BstV1I	GCAGC	3 cut(s)	281, 336, 1191
BstX2I	RGATCY	2 cut(s)	4, 892
BstYI	RGATCY	2 cut(s)	4, 892
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	969
BtgZI	GCGATG	2 cut(s)	100, 379
BtsCI	GGATG	3 cut(s)	215, 835, 1168
BtsIMutI	CAGTG	7 cut(s)	292, 479, 700, 751, 754, 1026, 1183
Cac8I	GCNNGC	5 cut(s)	379, 406, 451, 494, 498
CaiI	CAGNNNCTG	1 cut(s)	1185
Cfr10I	RCCGGY	2 cut(s)	377, 806
Cfr13I	GGNCC	2 cut(s)	253, 1078
Csp6I	GTAC	4 cut(s)	283, 779, 878, 935
CviAII	CATG	6 cut(s)	152, 269, 493, 908, 954, 1212
CviQI	GTAC	4 cut(s)	283, 779, 878, 935
DdeI	CTNAG	2 cut(s)	27, 1041
DpnI	GATC	6 cut(s)	6, 309, 387, 461, 677, 894
DpnII	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	37
Eco31I	GGTCTC	1 cut(s)	63
Eco47I	GGWCC	2 cut(s)	253, 1078
Eco57I	CTGAAG	1 cut(s)	260
Eco91I	GGTNACC	1 cut(s)	1124
EcoO65I	GGTNACC	1 cut(s)	1124
EcoRII	CCWGG	5 cut(s)	585, 627, 863, 1147, 1195
EcoT14I	CCWWGG	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	661
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	6 cut(s)	155, 272, 496, 911, 957, 1215
FaqI	GGGAC	1 cut(s)	1165
FatI	CATG	6 cut(s)	151, 268, 492, 907, 953, 1211
FauI	CCCGC	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	4 cut(s)	295, 325, 967, 1180
FokI	GGATG	3 cut(s)	202, 842, 1175
Fsp4HI	GCNGC	4 cut(s)	295, 325, 967, 1180
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	4 cut(s)	295, 325, 967, 1180
GsuI	CTGGAG	2 cut(s)	1140, 1218
HaeIII	GGCC	1 cut(s)	969
HapII	CCGG	3 cut(s)	312, 378, 807
Hin1II	CATG	6 cut(s)	155, 272, 496, 911, 957, 1215
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HpaII	CCGG	3 cut(s)	312, 378, 807
HphI	GGTGA	2 cut(s)	127, 1118
Hpy166II	GTNNAC	2 cut(s)	691, 1145
Hpy188I	TCNGA	7 cut(s)	30, 257, 339, 464, 738, 1042, 1256
Hpy188III	TCNNGA	7 cut(s)	305, 522, 673, 711, 847, 1007, 1142
Hpy8I	GTNNAC	2 cut(s)	691, 1145
HpyAV	CCTTC	8 cut(s)	83, 341, 459, 634, 862, 956, 1069, 1140
HpyCH4III	ACNGT	4 cut(s)	287, 604, 682, 778
HpyCH4V	TGCA	7 cut(s)	272, 324, 492, 500, 659, 749, 1179
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 493, 1188
HpyF3I	CTNAG	2 cut(s)	27, 1041
Hsp92II	CATG	6 cut(s)	155, 272, 496, 911, 957, 1215
KroI	GCCGGC	1 cut(s)	377
KroNI	GCCGGC	1 cut(s)	379
Kzo9I	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
LmnI	GCTCC	3 cut(s)	725, 988, 1171
Lsp1109I	GCAGC	3 cut(s)	281, 336, 1191
LweI	GCATC	2 cut(s)	668, 1153
MaeI	CTAG	1 cut(s)	522
MaeIII	GTNAC	3 cut(s)	230, 788, 1124
MalI	GATC	6 cut(s)	6, 309, 387, 461, 677, 894
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
MboII	GAAGA	3 cut(s)	78, 258, 907
MflI	RGATCY	2 cut(s)	4, 892
MhlI	GDGCHC	3 cut(s)	622, 645, 756
MluCI	AATT	3 cut(s)	695, 817, 886
MlyI	GAGTC	4 cut(s)	140, 449, 898, 1147
MmeI	TCCRAC	3 cut(s)	317, 537, 703
Mph1103I	ATGCAT	1 cut(s)	661
MroNI	GCCGGC	1 cut(s)	377
MseI	TTAA	3 cut(s)	399, 684, 1088
MspA1I	CMGCKG	1 cut(s)	1160
MspI	CCGG	3 cut(s)	312, 378, 807
MspR9I	CCNGG	6 cut(s)	312, 587, 629, 865, 1149, 1197
Mva1269I	GAATGC	1 cut(s)	842
MvaI	CCWGG	5 cut(s)	587, 629, 865, 1149, 1197
MwoI	GCNNNNNNNGC	3 cut(s)	321, 493, 1188
NaeI	GCCGGC	1 cut(s)	379
NciI	CCSGG	1 cut(s)	312
NdeII	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
NgoMIV	GCCGGC	1 cut(s)	377
NlaIII	CATG	6 cut(s)	155, 272, 496, 911, 957, 1215
NlaIV	GGNNCC	8 cut(s)	172, 254, 470, 545, 621, 644, 990, 1190
NmuCI	GTSAC	3 cut(s)	230, 788, 1124
NsiI	ATGCAT	1 cut(s)	661
NspI	RCATGY	2 cut(s)	155, 496
PaeI	GCATGC	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	2 cut(s)	361, 433
PctI	GAATGC	1 cut(s)	842
PdiI	GCCGGC	1 cut(s)	379
PfeI	GAWTC	7 cut(s)	23, 265, 479, 525, 582, 1216, 1251
PflMI	CCANNNNNTGG	1 cut(s)	717
PfoI	TCCNGGA	1 cut(s)	585
PkrI	GCNGC	4 cut(s)	296, 326, 968, 1181
Ple19I	CGATCG	1 cut(s)	462
PleI	GAGTC	4 cut(s)	140, 449, 898, 1147
PpsI	GAGTC	4 cut(s)	140, 449, 898, 1147
Psp6I	CCWGG	5 cut(s)	585, 627, 863, 1147, 1195
PspEI	GGTNACC	1 cut(s)	1124
PspGI	CCWGG	5 cut(s)	585, 627, 863, 1147, 1195
PspN4I	GGNNCC	8 cut(s)	172, 254, 470, 545, 621, 644, 990, 1190
PspPI	GGNCC	2 cut(s)	253, 1078
PstI	CTGCAG	1 cut(s)	1181
PstNI	CAGNNNCTG	1 cut(s)	1185
PsuI	RGATCY	2 cut(s)	4, 892
PvuI	CGATCG	1 cut(s)	462
RsaI	GTAC	4 cut(s)	284, 780, 879, 936
RsaNI	GTAC	4 cut(s)	283, 779, 878, 935
SalI	GTCGAC	1 cut(s)	689
SaqAI	TTAA	3 cut(s)	399, 684, 1088
SatI	GCNGC	4 cut(s)	295, 325, 967, 1180
Sau3AI	GATC	6 cut(s)	4, 307, 385, 459, 675, 892
Sau96I	GGNCC	2 cut(s)	253, 1078
SchI	GAGTC	4 cut(s)	140, 449, 898, 1147
ScrFI	CCNGG	6 cut(s)	312, 587, 629, 865, 1149, 1197
SduI	GDGCHC	3 cut(s)	622, 645, 756
SfaNI	GCATC	2 cut(s)	668, 1153
SfcI	CTRYAG	2 cut(s)	1177, 1238
SinI	GGWCC	2 cut(s)	253, 1078
SphI	GCATGC	1 cut(s)	496
Sse9I	AATT	3 cut(s)	695, 817, 886
SsiI	CCGC	4 cut(s)	83, 375, 966, 1160
SspI	AATATT	1 cut(s)	611
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	6 cut(s)	310, 585, 627, 863, 1147, 1195
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	4 cut(s)	287, 604, 682, 778
TaqI	TCGA	4 cut(s)	306, 427, 458, 690
TasI	AATT	3 cut(s)	695, 817, 886
TatI	WGTACW	2 cut(s)	282, 934
TauI	GCSGC	1 cut(s)	969
TfiI	GAWTC	7 cut(s)	23, 265, 479, 525, 582, 1216, 1251
Tru1I	TTAA	3 cut(s)	399, 684, 1088
Tru9I	TTAA	3 cut(s)	399, 684, 1088
TscAI	CASTG	7 cut(s)	292, 479, 707, 751, 761, 1026, 1190
TseFI	GTSAC	3 cut(s)	230, 788, 1124
TseI	GCWGC	3 cut(s)	294, 324, 1179
Tsp45I	GTSAC	3 cut(s)	230, 788, 1124
TspDTI	ATGAA	4 cut(s)	36, 546, 975, 1080
TspGWI	ACGGA	3 cut(s)	796, 908, 1001
TspRI	CASTG	7 cut(s)	292, 479, 707, 751, 761, 1026, 1190
Van91I	CCANNNNNTGG	1 cut(s)	717
VpaK11BI	GGWCC	2 cut(s)	253, 1078
XapI	RAATTY	2 cut(s)	817, 886
XbaI	TCTAGA	1 cut(s)	521
XceI	RCATGY	2 cut(s)	155, 496
XmiI	GTMKAC	1 cut(s)	690
XspI	CTAG	1 cut(s)	522
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.