Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014275

Physical Location & Seq

Genomic Coordinates Reverse (-)

3721296 .. 3722741

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCCTCATTCGATGGGCAAGGGTTTATGATGGTTGATAATTCTTGGGTCCAGACCAAAGCCATTGATGTTGAATCAACAACCGATATCTCTCCTTACCTTTCCAAGATCCTTGAAGATTCCGTCTGGAATGGAAACCGGTCCATTGTCTTTGATGTGTATTGGGATGTCAAATCAGTTAGCACAAAGTCCGAATGGCGTCTATGCTCAGTGAAGTTTAGCACTAAAAACTTCTGTCTCTTCCTCCGCCTGCCGAACCCGTTCTGTGATAATCTCAAGGATCTTTATCGCTTCTTTGCTTCCAAATTTGTCACATTTGTCGGTGTCCAGATTCAAGAAGACCTCGCTTTGCTTAAAGAAAACCACGGTATTGTGATCCGAAGCTCGTTGGAGATTGGGAAACTAGCTGCGAAAGCCCGAGGTACTCCAATTGTTGAGTTCCTTGGAACCAGAGAATTAGCTCACAAGATTCTTTGGTATGACATGAGTAGGCTTGATTCTATTCAGTCCAAGTGGGATGAAGCCAGCTCTAATGATCGTCTTGAAGCTGCTGCCATTGAAGGTTGGCTTATTTTCAATGTCTACGATCAATTGCAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008296 GO:0008297 GO:0008310 GO:0008408 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031325 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0098588 GO:0098805 GO:0140097 GO:1901360 GO:2000628 GO:2000630

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

200

Amino Acids

22.96

Weight (kDa)

5.26

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11770 AT5G06450
fragaria_vesca	FvH4_3g21850
prunus_persica	Prupe.4G202600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037631
rosa_laevigata	RLG00000033791 RLG00000033797 RLG00000034136
rosa_roxburghii	Rroxscaffold_1G00043320 Rroxscaffold_1G00043380
rosa_rugosa	Rorug05G0166200
rosa_samantha	Rh5BG291800 Rh5CG290500 Rh5DG265600 Rh5DG266100 Rh5DG301600
rosa_wichuraiana	Rw5G023660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	582
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	3 cut(s)	103, 288, 370
AcsI	RAATTY	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	199
AfaI	GTAC	1 cut(s)	424
AgeI	ACCGGT	1 cut(s)	138
AgsI	TTSAA	6 cut(s)	74, 116, 335, 545, 560, 577
AluBI	AGCT	5 cut(s)	384, 407, 461, 528, 548
AluI	AGCT	5 cut(s)	384, 407, 461, 528, 548
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	3 cut(s)	103, 288, 370
Ama87I	CYCGRG	1 cut(s)	417
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	407, 548, 551, 595
ApoI	RAATTY	1 cut(s)	305
AsiGI	ACCGGT	1 cut(s)	138
Asp700I	GAANNNNTTC	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	49, 141
AvaI	CYCGRG	1 cut(s)	417
AvaII	GGWCC	2 cut(s)	49, 141
BbsI	GAAGAC	1 cut(s)	345
BbvI	GCAGC	3 cut(s)	394, 535, 538
BccI	CCATC	2 cut(s)	8, 25
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	1 cut(s)	404
BisI	GCNGC	4 cut(s)	408, 549, 552, 596
BlsI	GCNGC	4 cut(s)	409, 550, 553, 597
Bme18I	GGWCC	2 cut(s)	49, 141
BmeT110I	CYCGRG	1 cut(s)	417
BmgT120I	GGNCC	2 cut(s)	49, 141
BmiI	GGNNCC	2 cut(s)	50, 448
BpiI	GAAGAC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	285
BsaHI	GRCGYC	1 cut(s)	199
BsaJI	CCNNGG	3 cut(s)	364, 418, 442
BsaWI	WCCGGW	1 cut(s)	138
Bse118I	RCCGGY	1 cut(s)	138
Bse8I	GATNNNNATC	1 cut(s)	285
BseDI	CCNNGG	3 cut(s)	364, 418, 442
BseGI	GGATG	2 cut(s)	172, 523
BseJI	GATNNNNATC	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	222
BseXI	GCAGC	3 cut(s)	394, 535, 538
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	417
Bsp143I	GATC	5 cut(s)	108, 280, 375, 535, 586
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	221
BspLI	GGNNCC	2 cut(s)	50, 448
BspPI	GGATC	3 cut(s)	103, 288, 370
BsrFI	RCCGGY	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	138
BssECI	CCNNGG	3 cut(s)	364, 418, 442
BssMI	GATC	5 cut(s)	108, 280, 375, 535, 586
BssNI	GRCGYC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	442
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	1 cut(s)	199
BstC8I	GCNNGC	2 cut(s)	251, 526
BstDEI	CTNAG	1 cut(s)	208
BstDSI	CCRYGG	1 cut(s)	364
BstF5I	GGATG	2 cut(s)	172, 523
BstKTI	GATC	5 cut(s)	111, 283, 378, 538, 589
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	5 cut(s)	108, 280, 375, 535, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstV1I	GCAGC	3 cut(s)	394, 535, 538
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	2 cut(s)	108, 280
BstYI	RGATCY	2 cut(s)	108, 280
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	172, 523
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	251, 526
Cfr10I	RCCGGY	1 cut(s)	138
Cfr13I	GGNCC	2 cut(s)	49, 141
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	423
CspAI	ACCGGT	1 cut(s)	138
CviAII	CATG	1 cut(s)	484
CviQI	GTAC	1 cut(s)	423
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	5 cut(s)	110, 282, 377, 537, 588
DpnII	GATC	5 cut(s)	108, 280, 375, 535, 586
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	442
Eco32I	GATATC	1 cut(s)	88
Eco47I	GGWCC	2 cut(s)	49, 141
Eco88I	CYCGRG	1 cut(s)	417
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	1 cut(s)	487
FaiI	YATR	4 cut(s)	29, 205, 480, 485
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FatI	CATG	1 cut(s)	483
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	4 cut(s)	408, 549, 552, 596
FokI	GGATG	2 cut(s)	179, 530
Fsp4HI	GCNGC	4 cut(s)	408, 549, 552, 596
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	4 cut(s)	408, 549, 552, 596
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	139
HgaI	GACGC	1 cut(s)	188
Hin1I	GRCGYC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	487
HinfI	GANTC	5 cut(s)	74, 119, 331, 469, 497
HpaII	CCGG	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	2 cut(s)	193, 380
Hpy188III	TCNNGA	5 cut(s)	52, 127, 328, 335, 542
Hpy8I	GTNNAC	1 cut(s)	583
HpyAV	CCTTC	1 cut(s)	554
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4V	TGCA	1 cut(s)	595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	1 cut(s)	208
Hsp92I	GRCGYC	1 cut(s)	199
Hsp92II	CATG	1 cut(s)	487
Kzo9I	GATC	5 cut(s)	108, 280, 375, 535, 586
LpnPI	CCDG	7 cut(s)	65, 112, 152, 263, 341, 463, 538
Lsp1109I	GCAGC	3 cut(s)	394, 535, 538
MaeI	CTAG	1 cut(s)	404
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	5 cut(s)	110, 282, 377, 537, 588
MboI	GATC	5 cut(s)	108, 280, 375, 535, 586
MboII	GAAGA	3 cut(s)	128, 232, 350
MfeI	CAATTG	2 cut(s)	429, 590
MflI	RGATCY	2 cut(s)	108, 280
MluCI	AATT	5 cut(s)	40, 305, 429, 455, 590
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	4 cut(s)	16, 254, 353, 413
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	1 cut(s)	354
MspI	CCGG	1 cut(s)	139
MunI	CAATTG	2 cut(s)	429, 590
MwoI	GCNNNNNNNGC	1 cut(s)	413
NdeII	GATC	5 cut(s)	108, 280, 375, 535, 586
NlaIII	CATG	1 cut(s)	487
NlaIV	GGNNCC	2 cut(s)	50, 448
NmuCI	GTSAC	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	5 cut(s)	74, 119, 331, 469, 497
PinAI	ACCGGT	1 cut(s)	138
PkrI	GCNGC	4 cut(s)	409, 550, 553, 597
PspN4I	GGNNCC	2 cut(s)	50, 448
PspPI	GGNCC	2 cut(s)	49, 141
PsuI	RGATCY	2 cut(s)	108, 280
RsaI	GTAC	1 cut(s)	424
RsaNI	GTAC	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	4 cut(s)	408, 549, 552, 596
Sau3AI	GATC	5 cut(s)	108, 280, 375, 535, 586
Sau96I	GGNCC	2 cut(s)	49, 141
SetI	ASST	9 cut(s)	102, 345, 386, 409, 424, 463, 530, 550, 565
SinI	GGWCC	2 cut(s)	49, 141
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	5 cut(s)	40, 305, 429, 455, 590
SsiI	CCGC	1 cut(s)	247
SspMI	CTAG	1 cut(s)	404
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	1 cut(s)	368
TaqI	TCGA	1 cut(s)	12
TasI	AATT	5 cut(s)	40, 305, 429, 455, 590
TfiI	GAWTC	5 cut(s)	74, 119, 331, 469, 497
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	4 cut(s)	407, 548, 551, 595
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	534
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	1 cut(s)	216
VpaK11BI	GGWCC	2 cut(s)	49, 141
XapI	RAATTY	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.