Rorug05G0166200

F-box family protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002820
Physical Location & Seq
Reverse (-)
15381808 .. 15386227
4420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0166200.1

Sequence Viewer

Length: 978 bp
ATGATACTTCTACAATCCCATTCAAGATTCCTCCTTGACACCTTGTTAAATCGCCTCCAAAACATTGAAAAGGCGGTGGAGCTGGACTACCATTGGGCCGAGTTCGATGACGTCCGGTACCACATTCAGGTGACGATGAAAAACCCACACATTGTGCTGCTTTCGGTTTCGCTGCCGACCCCACCTCCGGAAACTGTGTTCTTGAGTGGGCTTCCTGCTGGGGCTATAGAGGCTATAAAGGCTGCGTATGGATCAGTAGTGCAGATTCTTGACCCACCTAGAGATGGGTTTAATCTTACATTGAAGCTCAATCTCTCTAAACTTCCTACAGATGAAGAGTACAAACATGCTCTTTTGGTAAAGATTGCATCCGTAAGGGAAGTGGTGCTAGGAGCTCCATTGAGAGTAATTCTGAAGCAGCTTACTTCGAGGACTGTTGCTTCCGATATTGATCCACTTGTTGCTCTTGTGCACCGGCCAAAGGAATCCTTTTTCCTTATTCCTCAGGCAGAAAAGGTGACCGTGGTATTTCCTATGAGATTCAAGGACTCTATTGACATTGTTCTTGCAACTTCCTTCCTGCAGGAATTTGTGGATGCAAGACGTACGGCTGGACTTAATAATGCTCCTTATTGTATGTGGTCTCCGACCCCTCCTTTAGAACTAAAGGGAGCTCCTGATGAAGCTCTATCTGTCAATGCGGGATTTGTCACTTTTGTTGTTTTACCTCGTCATGTGGAAGGCAAGAAACTGGATCGGACAGTTTGGAGTTTATCAACTTTCCATGCATATGTTAGTTATCATGTTAAGTGTTCAGAGGGATTCATGCATACAAGGATGCGACGTCGTGTAGAATCTTTGATTGAGGCTCTTGATCGTGCTAAGCCTGGAATGGAGAATGCAAGGAATAATGCAGCACAGAATAGATCCTTTAAACGGCTGAGCCTCAAGGAAGCTAGGAACCATTCTTTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

325

Amino Acids

36.66

Weight (kDa)

9.24

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
P34-Arc PF04045 74 - 296 7.2e-55 Arp2/3 complex, 34 kD subunit p34-Arc
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 114, 847
Acc65I GGTACC 1 cut(s) 117
AccB1I GGYRCC 1 cut(s) 117
AccIII TCCGGA 1 cut(s) 187
AciI CCGC 2 cut(s) 74, 701
AclWI GGATC 4 cut(s) 259, 446, 762, 921
AcoI YGGCCR 1 cut(s) 476
AcsI RAATTY 1 cut(s) 587
AcuI CTGAAG 1 cut(s) 434
AcyI GRCGYC 2 cut(s) 111, 844
AdeI CACNNNGTG 1 cut(s) 154
AfaI GTAC 3 cut(s) 119, 341, 607
AfiI CCNNNNNNNGG 5 cut(s) 127, 187, 284, 481, 936
AgsI TTSAA 4 cut(s) 24, 68, 304, 544
AjnI CCWGG 1 cut(s) 886
AloI GAACNNNNNNTCC 2 cut(s) 182, 214
AluBI AGCT 7 cut(s) 82, 307, 395, 421, 674, 686, 956
AluI AGCT 7 cut(s) 82, 307, 395, 421, 674, 686, 956
Alw21I GWGCWC 3 cut(s) 397, 474, 676
Alw26I GTCTC 1 cut(s) 648
Alw44I GTGCAC 1 cut(s) 470
AlwI GGATC 4 cut(s) 259, 446, 762, 921
Aor13HI TCCGGA 1 cut(s) 187
AoxI GGCC 2 cut(s) 96, 476
ApaLI GTGCAC 1 cut(s) 470
ApeKI GCWGC 5 cut(s) 157, 172, 242, 418, 914
ApoI RAATTY 1 cut(s) 587
Asp718I GGTACC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 2 cut(s) 142, 529
AxyI CCTNAGG 1 cut(s) 504
BaeGI GKGCMC 1 cut(s) 474
BanI GGYRCC 1 cut(s) 117
BanII GRGCYC 2 cut(s) 397, 676
Bbv12I GWGCWC 3 cut(s) 397, 474, 676
BbvI GCAGC 5 cut(s) 144, 159, 229, 430, 926
BccI CCATC 1 cut(s) 278
BceAI ACGGC 2 cut(s) 624, 953
BciT130I CCWGG 1 cut(s) 888
BcoDI GTCTC 1 cut(s) 648
BfaI CTAG 3 cut(s) 279, 389, 957
BfmI CTRYAG 3 cut(s) 225, 327, 581
BisI GCNGC 5 cut(s) 158, 173, 243, 419, 915
BlpI GCTNAGC 2 cut(s) 882, 941
BlsI GCNGC 5 cut(s) 159, 174, 244, 420, 916
Bme1390I CCNGG 1 cut(s) 888
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 2 cut(s) 119, 962
BmrFI CCNGG 1 cut(s) 888
BmsI GCATC 3 cut(s) 377, 586, 828
Bpu1102I GCTNAGC 2 cut(s) 882, 941
BpuEI CTTGAG 2 cut(s) 223, 932
BsaBI GATNNNNATC 1 cut(s) 450
BsaHI GRCGYC 2 cut(s) 111, 844
BsaI GGTCTC 1 cut(s) 648
BsaJI CCNNGG 1 cut(s) 522
BsaWI WCCGGW 2 cut(s) 114, 187
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bsc4I CCNNNNNNNGG 5 cut(s) 127, 187, 284, 481, 936
Bse118I RCCGGY 1 cut(s) 474
Bse1I ACTGG 1 cut(s) 756
Bse21I CCTNAGG 1 cut(s) 504
Bse8I GATNNNNATC 1 cut(s) 450
BseAI TCCGGA 1 cut(s) 187
BseBI CCWGG 1 cut(s) 888
BseDI CCNNGG 1 cut(s) 522
BseGI GGATG 3 cut(s) 368, 601, 843
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 5 cut(s) 127, 187, 284, 481, 936
BseMII CTCAG 2 cut(s) 518, 932
BseNI ACTGG 1 cut(s) 756
BseSI GKGCMC 1 cut(s) 474
BseXI GCAGC 5 cut(s) 144, 159, 229, 430, 926
BseYI CCCAGC 1 cut(s) 218
BsgI GTGCAG 1 cut(s) 281
BshFI GGCC 2 cut(s) 98, 478
BshNI GGYRCC 1 cut(s) 117
BsiHKAI GWGCWC 3 cut(s) 397, 474, 676
BsiSI CCGG 3 cut(s) 115, 188, 475
BsiWI CGTACG 1 cut(s) 605
BslI CCNNNNNNNGG 5 cut(s) 127, 187, 284, 481, 936
BsmAI GTCTC 1 cut(s) 648
BsmI GAATGC 1 cut(s) 904
BsnI GGCC 2 cut(s) 98, 478
Bso31I GGTCTC 1 cut(s) 648
Bsp1286I GDGCHC 3 cut(s) 397, 474, 676
Bsp13I TCCGGA 1 cut(s) 187
Bsp143I GATC 5 cut(s) 251, 451, 754, 874, 926
Bsp1720I GCTNAGC 2 cut(s) 882, 941
BspACI CCGC 2 cut(s) 74, 701
BspANI GGCC 2 cut(s) 98, 478
BspCNI CTCAG 2 cut(s) 517, 933
BspEI TCCGGA 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 119, 962
BspMAI CTGCAG 1 cut(s) 585
BspPI GGATC 4 cut(s) 259, 446, 762, 921
BspT107I GGYRCC 1 cut(s) 117
BspTNI GGTCTC 1 cut(s) 648
BsrFI RCCGGY 1 cut(s) 474
BsrI ACTGG 1 cut(s) 756
BssAI RCCGGY 1 cut(s) 474
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 5 cut(s) 251, 451, 754, 874, 926
BssNI GRCGYC 2 cut(s) 111, 844
Bst2UI CCWGG 1 cut(s) 888
Bst4CI ACNGT 4 cut(s) 196, 436, 523, 763
Bst6I CTCTTC 1 cut(s) 330
BstACI GRCGYC 2 cut(s) 111, 844
BstDEI CTNAG 3 cut(s) 504, 882, 941
BstDSI CCRYGG 1 cut(s) 522
BstEII GGTNACC 1 cut(s) 517
BstF5I GGATG 3 cut(s) 368, 601, 843
BstKTI GATC 5 cut(s) 254, 454, 757, 877, 929
BstMAI GTCTC 1 cut(s) 648
BstMBI GATC 5 cut(s) 251, 451, 754, 874, 926
BstMWI GCNNNNNNNGC 2 cut(s) 230, 239
BstNI CCWGG 1 cut(s) 888
BstNSI RCATGY 1 cut(s) 350
BstPI GGTNACC 1 cut(s) 517
BstSCI CCNGG 1 cut(s) 886
BstSFI CTRYAG 3 cut(s) 225, 327, 581
BstSLI GKGCMC 1 cut(s) 474
BstV1I GCAGC 5 cut(s) 144, 159, 229, 430, 926
BstX2I RGATCY 1 cut(s) 926
BstYI RGATCY 1 cut(s) 926
Bsu36I CCTNAGG 1 cut(s) 504
BsuRI GGCC 2 cut(s) 98, 478
BtgI CCRYGG 1 cut(s) 522
BtsCI GGATG 3 cut(s) 368, 601, 843
Cfr10I RCCGGY 1 cut(s) 474
Cfr13I GGNCC 1 cut(s) 96
Csp6I GTAC 3 cut(s) 118, 340, 606
CviAII CATG 5 cut(s) 347, 734, 785, 803, 826
CviQI GTAC 3 cut(s) 118, 340, 606
DdeI CTNAG 3 cut(s) 504, 882, 941
DpnI GATC 5 cut(s) 253, 453, 756, 876, 928
DpnII GATC 5 cut(s) 251, 451, 754, 874, 926
DraI TTTAAA 1 cut(s) 934
DraIII CACNNNGTG 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 476
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Ecl136II GAGCTC 2 cut(s) 395, 674
Eco24I GRGCYC 2 cut(s) 397, 676
Eco31I GGTCTC 1 cut(s) 648
Eco53kI GAGCTC 2 cut(s) 395, 674
Eco57I CTGAAG 1 cut(s) 434
Eco81I CCTNAGG 1 cut(s) 504
Eco91I GGTNACC 1 cut(s) 517
EcoICRI GAGCTC 2 cut(s) 395, 674
EcoO65I GGTNACC 1 cut(s) 517
EcoRII CCWGG 1 cut(s) 886
EcoT22I ATGCAT 2 cut(s) 790, 831
EcoT38I GRGCYC 2 cut(s) 397, 676
FaeI CATG 5 cut(s) 350, 737, 788, 806, 829
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FatI CATG 5 cut(s) 346, 733, 784, 802, 825
FauI CCCGC 1 cut(s) 694
FauNDI CATATG 1 cut(s) 790
Fnu4HI GCNGC 5 cut(s) 158, 173, 243, 419, 915
FokI GGATG 3 cut(s) 355, 608, 850
FriOI GRGCYC 2 cut(s) 397, 676
Fsp4HI GCNGC 5 cut(s) 158, 173, 243, 419, 915
FspBI CTAG 3 cut(s) 279, 389, 957
GluI GCNGC 5 cut(s) 158, 173, 243, 419, 915
GsaI CCCAGC 1 cut(s) 222
HaeIII GGCC 2 cut(s) 98, 478
HapII CCGG 3 cut(s) 115, 188, 475
Hin1I GRCGYC 2 cut(s) 111, 844
Hin1II CATG 5 cut(s) 350, 737, 788, 806, 829
HinfI GANTC 7 cut(s) 27, 265, 485, 540, 548, 822, 854
HpaII CCGG 3 cut(s) 115, 188, 475
HphI GGTGA 2 cut(s) 142, 529
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 5 cut(s) 414, 445, 648, 759, 817
Hpy188III TCNNGA 6 cut(s) 24, 188, 202, 269, 677, 872
Hpy8I GTNNAC 1 cut(s) 472
Hpy99I CGWCG 2 cut(s) 846, 849
HpyAV CCTTC 2 cut(s) 586, 734
HpyCH4III ACNGT 4 cut(s) 196, 436, 523, 763
HpyCH4IV ACGT 3 cut(s) 111, 604, 844
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 239
HpyF3I CTNAG 3 cut(s) 504, 882, 941
HpySE526I ACGT 3 cut(s) 111, 604, 844
Hsp92I GRCGYC 2 cut(s) 111, 844
Hsp92II CATG 5 cut(s) 350, 737, 788, 806, 829
Kpn2I TCCGGA 1 cut(s) 187
KpnI GGTACC 1 cut(s) 121
Kzo9I GATC 5 cut(s) 251, 451, 754, 874, 926
LmnI GCTCC 6 cut(s) 79, 392, 400, 631, 671, 679
Lsp1109I GCAGC 5 cut(s) 144, 159, 229, 430, 926
LweI GCATC 3 cut(s) 377, 586, 828
MaeI CTAG 3 cut(s) 279, 389, 957
MaeII ACGT 3 cut(s) 111, 604, 844
MaeIII GTNAC 3 cut(s) 130, 517, 709
MalI GATC 5 cut(s) 253, 453, 756, 876, 928
MboI GATC 5 cut(s) 251, 451, 754, 874, 926
MboII GAAGA 1 cut(s) 347
MflI RGATCY 1 cut(s) 926
MhlI GDGCHC 3 cut(s) 397, 474, 676
MluCI AATT 3 cut(s) 408, 587, 973
MlyI GAGTC 1 cut(s) 542
MmeI TCCRAC 1 cut(s) 671
Mph1103I ATGCAT 2 cut(s) 790, 831
MroI TCCGGA 1 cut(s) 187
MseI TTAA 7 cut(s) 47, 291, 618, 807, 933, 972, 976
MslI CAYNNNNRTG 2 cut(s) 128, 789
MspI CCGG 3 cut(s) 115, 188, 475
MspR9I CCNGG 1 cut(s) 888
Mva1269I GAATGC 1 cut(s) 904
MvaI CCWGG 1 cut(s) 888
MwoI GCNNNNNNNGC 2 cut(s) 230, 239
NdeI CATATG 1 cut(s) 790
NdeII GATC 5 cut(s) 251, 451, 754, 874, 926
NlaIII CATG 5 cut(s) 350, 737, 788, 806, 829
NlaIV GGNNCC 2 cut(s) 119, 962
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 3 cut(s) 130, 517, 709
NsiI ATGCAT 2 cut(s) 790, 831
NspI RCATGY 1 cut(s) 350
PacI TTAATTAA 1 cut(s) 976
PctI GAATGC 1 cut(s) 904
PfeI GAWTC 6 cut(s) 27, 265, 485, 540, 822, 854
Pfl23II CGTACG 1 cut(s) 605
PkrI GCNGC 5 cut(s) 159, 174, 244, 420, 916
PleI GAGTC 1 cut(s) 542
PpsI GAGTC 1 cut(s) 542
Psp124BI GAGCTC 2 cut(s) 397, 676
Psp6I CCWGG 1 cut(s) 886
PspEI GGTNACC 1 cut(s) 517
PspFI CCCAGC 1 cut(s) 218
PspGI CCWGG 1 cut(s) 886
PspLI CGTACG 1 cut(s) 605
PspN4I GGNNCC 2 cut(s) 119, 962
PspPI GGNCC 1 cut(s) 96
PstI CTGCAG 1 cut(s) 585
PsuI RGATCY 1 cut(s) 926
RsaI GTAC 3 cut(s) 119, 341, 607
RsaNI GTAC 3 cut(s) 118, 340, 606
RseI CAYNNNNRTG 2 cut(s) 128, 789
SacI GAGCTC 2 cut(s) 397, 676
SaqAI TTAA 7 cut(s) 47, 291, 618, 807, 933, 972, 976
SatI GCNGC 5 cut(s) 158, 173, 243, 419, 915
Sau3AI GATC 5 cut(s) 251, 451, 754, 874, 926
Sau96I GGNCC 1 cut(s) 96
SbfI CCTGCAGG 1 cut(s) 585
SchI GAGTC 1 cut(s) 542
ScrFI CCNGG 1 cut(s) 888
SdaI CCTGCAGG 1 cut(s) 585
SduI GDGCHC 3 cut(s) 397, 474, 676
SfaNI GCATC 3 cut(s) 377, 586, 828
SfcI CTRYAG 3 cut(s) 225, 327, 581
SmiMI CAYNNNNRTG 2 cut(s) 128, 789
SmlI CTYRAG 2 cut(s) 202, 947
SmoI CTYRAG 2 cut(s) 202, 947
Sse8387I CCTGCAGG 1 cut(s) 585
Sse9I AATT 3 cut(s) 408, 587, 973
SsiI CCGC 2 cut(s) 74, 701
SspMI CTAG 3 cut(s) 279, 389, 957
SstI GAGCTC 2 cut(s) 397, 676
StyD4I CCNGG 1 cut(s) 886
TaaI ACNGT 4 cut(s) 196, 436, 523, 763
TaiI ACGT 3 cut(s) 114, 607, 847
TaqI TCGA 2 cut(s) 105, 428
TasI AATT 3 cut(s) 408, 587, 973
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 6 cut(s) 27, 265, 485, 540, 822, 854
Tru1I TTAA 7 cut(s) 47, 291, 618, 807, 933, 972, 976
Tru9I TTAA 7 cut(s) 47, 291, 618, 807, 933, 972, 976
TseFI GTSAC 3 cut(s) 130, 517, 709
TseI GCWGC 5 cut(s) 157, 172, 242, 418, 914
Tsp45I GTSAC 3 cut(s) 130, 517, 709
TspDTI ATGAA 4 cut(s) 152, 348, 696, 814
TspGWI ACGGA 1 cut(s) 361
VneI GTGCAC 1 cut(s) 470
XapI RAATTY 1 cut(s) 587
XceI RCATGY 1 cut(s) 350
XspI CTAG 3 cut(s) 279, 389, 957
ZraI GACGTC 2 cut(s) 112, 845
Zsp2I ATGCAT 2 cut(s) 790, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.