Rh5DG267200

F-box family protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002820
Physical Location & Seq
Forward (+)
32340653 .. 32341407
755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG267200.1

Sequence Viewer

Length: 507 bp
ATGGGTGCACATCACGTATTTGTTAATGGAAAAGTTTATTGGTTTATTCCCTCAGAAGAAAATTATGATATCCCTGGATCCATTCTTTCAGTTGATATGGAGGAACATTTTGAAGTTGTCGGGCTTCCAGATACACTCACAGAACTCTCCTTCTTAATTGATTTTGAAGGCAGCTTATCAGTAGTCGCGGTTTTTGATAAAGTTGAGCCTGTGGTTATTTGGATTTTAAAGAATGAAAATGAATATGTTTGGGAGAAGAAATGCAGTGCTGGTATTCCCTACAAAGGAATGATGGAGGAACTTCACTCTGTAGCTGCCAGAGAAAGTGACATTTTTTTCATAACTGCACACGATTATATTATCTTAGACACAGATGACAGTTCCTGGGAACTTGTTGAGTTTGAAGAGTTTGAACCTAATGCTCACGCTGTTTTTCCATACACAGAAAGCCTCCTCCCTTGTAGTGGACGGTTTGCAGGGGAGGTGAACAATCAAAGAGCAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

168

Amino Acids

19.09

Weight (kDa)

4.3

Isoelectric Point (pI)

24.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 5 - 94 3.4e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 188
AciI CCGC 1 cut(s) 188
AclWI GGATC 2 cut(s) 72, 85
AfiI CCNNNNNNNGG 2 cut(s) 284, 464
AgsI TTSAA 4 cut(s) 113, 167, 404, 413
AjnI CCWGG 2 cut(s) 73, 383
AjuI GAANNNNNNNTTGG 2 cut(s) 22, 54
AluBI AGCT 2 cut(s) 174, 314
AluI AGCT 2 cut(s) 174, 314
Alw21I GWGCWC 1 cut(s) 10
Alw44I GTGCAC 1 cut(s) 6
AlwI GGATC 2 cut(s) 72, 85
AlwNI CAGNNNCTG 1 cut(s) 384
ApaLI GTGCAC 1 cut(s) 6
ApeKI GCWGC 3 cut(s) 171, 314, 500
AsuHPI GGTGA 1 cut(s) 496
BaeGI GKGCMC 1 cut(s) 10
BamHI GGATCC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 10
BbvI GCAGC 2 cut(s) 183, 301
BccI CCATC 1 cut(s) 286
BciT130I CCWGG 2 cut(s) 75, 385
BfmI CTRYAG 1 cut(s) 309
BisI GCNGC 3 cut(s) 172, 315, 501
BlsI GCNGC 3 cut(s) 173, 316, 502
Bme1390I CCNGG 2 cut(s) 75, 385
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 2 cut(s) 75, 385
BsaAI YACGTR 1 cut(s) 16
BsaJI CCNNGG 2 cut(s) 73, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 464
BseBI CCWGG 2 cut(s) 75, 385
BseDI CCNNGG 2 cut(s) 73, 384
BseLI CCNNNNNNNGG 2 cut(s) 284, 464
BseMII CTCAG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 443
BseSI GKGCMC 1 cut(s) 10
BseXI GCAGC 2 cut(s) 183, 301
BsgI GTGCAG 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 10
BslI CCNNNNNNNGG 2 cut(s) 284, 464
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 77
BspACI CCGC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 65
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 2 cut(s) 72, 85
BssECI CCNNGG 2 cut(s) 73, 384
BssMI GATC 1 cut(s) 77
Bst2UI CCWGG 2 cut(s) 75, 385
Bst4CI ACNGT 2 cut(s) 380, 471
Bst6I CTCTTC 1 cut(s) 399
BstBAI YACGTR 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 52, 364
BstFNI CGCG 1 cut(s) 188
BstKTI GATC 1 cut(s) 80
BstMBI GATC 1 cut(s) 77
BstNI CCWGG 2 cut(s) 75, 385
BstSCI CCNGG 2 cut(s) 73, 383
BstSFI CTRYAG 1 cut(s) 309
BstSLI GKGCMC 1 cut(s) 10
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 2 cut(s) 183, 301
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 271
CaiI CAGNNNCTG 1 cut(s) 384
CviJI RGCY 5 cut(s) 124, 174, 208, 314, 450
CviKI_1 RGCY 5 cut(s) 124, 174, 208, 314, 450
DdeI CTNAG 2 cut(s) 52, 364
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
DraI TTTAAA 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco32I GATATC 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 73, 383
EcoRV GATATC 1 cut(s) 70
FaiI YATR 6 cut(s) 66, 98, 246, 341, 357, 439
Fnu4HI GCNGC 3 cut(s) 172, 315, 501
Fsp4HI GCNGC 3 cut(s) 172, 315, 501
GluI GCNGC 3 cut(s) 172, 315, 501
HphI GGTGA 1 cut(s) 496
Hpy166II GTNNAC 3 cut(s) 8, 467, 487
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 3 cut(s) 8, 467, 487
HpyAV CCTTC 2 cut(s) 160, 161
HpyCH4III ACNGT 2 cut(s) 380, 471
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 8, 264, 347, 476
HpyF3I CTNAG 2 cut(s) 52, 364
HpySE526I ACGT 1 cut(s) 15
Kzo9I GATC 1 cut(s) 77
LpnPI CCDG 9 cut(s) 60, 87, 141, 222, 255, 331, 370, 397, 462
Lsp1109I GCAGC 2 cut(s) 183, 301
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 326
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 3 cut(s) 68, 268, 416
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 2 cut(s) 61, 156
MnlI CCTC 6 cut(s) 61, 94, 289, 461, 464, 475
MseI TTAA 3 cut(s) 24, 155, 227
MspR9I CCNGG 2 cut(s) 75, 385
MvaI CCWGG 2 cut(s) 75, 385
MvnI CGCG 1 cut(s) 188
NdeII GATC 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 326
PkrI GCNGC 3 cut(s) 173, 316, 502
Ppu21I YACGTR 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 73, 383
PspGI CCWGG 2 cut(s) 73, 383
PspN4I GGNNCC 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 384
PsuI RGATCY 1 cut(s) 77
SaqAI TTAA 3 cut(s) 24, 155, 227
SatI GCNGC 3 cut(s) 172, 315, 501
Sau3AI GATC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 75, 385
SduI GDGCHC 1 cut(s) 10
SetI ASST 5 cut(s) 18, 176, 316, 418, 486
SfcI CTRYAG 1 cut(s) 309
Sse9I AATT 2 cut(s) 61, 156
SsiI CCGC 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 73, 383
TaaI ACNGT 2 cut(s) 380, 471
TaiI ACGT 1 cut(s) 18
TasI AATT 2 cut(s) 61, 156
Tru1I TTAA 3 cut(s) 24, 155, 227
Tru9I TTAA 3 cut(s) 24, 155, 227
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 3 cut(s) 171, 314, 500
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 3 cut(s) 249, 255, 328
TspRI CASTG 1 cut(s) 271
VneI GTGCAC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.