Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Forward (+)

32318157 .. 32322999

Gene Structure 4843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31637

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAAATGGTGAATTTTGTTGGTAATTGTATCCAAAGGAAGAATGTTGAGTGGTTGGATCTGGAATCTTTCGAAGGTGTGGTTGATAATGTACTTTCATCGCTTCCTGTCAAGTGCCTTCTAAATGTTAAGGCTGTTTCTAAATTCTTGCGTGATTTGATTCGTAGTCAAGCTTTCATTAGATTGCATTTAAGTCGGTCAAGAGAAAATGCCTTGTATATATTTTTCCCTTTTATGCCAATTAACAGAAACATATACATCATTGATGCTGATGCGGTAGTCACTGAAACAGTCACTCTTCCTACTGATGAGAATCTATCAACTCTTAGTATGGTTTGTTCCTATAATGGTTTGATTTGTCTCACCAATTTTCCCGTGACTCTTTACTCATATAGTTCTCAAGGAGTGGCAGTGGCAGACTTGGAAATCCTGATCTGCAATCCCGCCACTCATGAAGTTGGTTTACTTCCAAAATGTAGCCCATCGGAAGAGGACCTAGGCATTGGTGTTGCCTTTGGCCCAGAGATCAGTGAACCTGAAACAGTCCTCCCTCCAGAGTGTGAGATATATTCATCCAGAACTGGAACCTGGAGTTGCATAGGTCCTGTTCAGCATCGTCCTATGGGTGCACATCACGTATTTGTTAACGGAAAAGTTTATTGGTTTATTCCCTCAGAAGAAAATTATGATATCCCTGGATCCATTCTATCAGTTGATATGGAGGAACATTTTGAAGTTGTCGGGCTTCCAGATACACTCACAGAACTCTCCTTCTTAATTGATTTTGAAGGCTGCTTATCAGTAGTCGCGGTTTTTGATAAAGATGAGCCTGTGGTTATTTGGATTTTAAAGAATGAAAATGAATATGTTTGGGAGAAGAAATGCAGTGCTGGTATTCCCTACAAAGGAATGATGGAGGAACTTCACTCTGTAGCTGCTAGAGAAAGTGACATTTTTTTCATAACTGCACACGATTATATTATCTTAGACACAGATGACAGTTCCTGGGAACTTGTTGAGTTTGAAGAGTTTGAACCTAATGCTCACGCTGTTTTTCCATACACAGAAAGCCTCCTCCCTTGTAGTGGACGGTTTGTAGGGGAGGTGAACAATCAAAGAGCAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

375

Amino Acids

42.12

Weight (kDa)

4.44

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	92 - 301	9.6e-14	F-box associated beta propeller domain
FBA_1	PF07734	185 - 328	3.2e-08	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	809
AciI	CCGC	3 cut(s)	275, 444, 809
AclWI	GGATC	3 cut(s)	66, 693, 706
AcsI	RAATTY	2 cut(s)	13, 143
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	2 cut(s)	905, 1085
AgsI	TTSAA	4 cut(s)	734, 788, 1025, 1034
AjnI	CCWGG	3 cut(s)	587, 694, 1004
AjuI	GAANNNNNNNTTGG	2 cut(s)	643, 675
AluBI	AGCT	2 cut(s)	173, 935
AluI	AGCT	2 cut(s)	173, 935
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	1 cut(s)	365
Alw44I	GTGCAC	1 cut(s)	627
AlwI	GGATC	3 cut(s)	66, 693, 706
AlwNI	CAGNNNCTG	1 cut(s)	1005
AoxI	GGCC	1 cut(s)	517
ApaLI	GTGCAC	1 cut(s)	627
ApeKI	GCWGC	3 cut(s)	792, 935, 1121
ApoI	RAATTY	2 cut(s)	13, 143
AspA2I	CCTAGG	1 cut(s)	496
AspS9I	GGNCC	3 cut(s)	493, 518, 602
AsuHPI	GGTGA	3 cut(s)	22, 355, 1117
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	2 cut(s)	493, 602
AvrII	CCTAGG	1 cut(s)	496
BaeGI	GKGCMC	1 cut(s)	631
BamHI	GGATCC	1 cut(s)	698
BarI	GAAGNNNNNNTAC	2 cut(s)	447, 479
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	2 cut(s)	779, 922
BccI	CCATC	2 cut(s)	490, 907
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	3 cut(s)	589, 696, 1006
BciVI	GTATCC	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	2 cut(s)	497, 939
BfmI	CTRYAG	1 cut(s)	930
BfuI	GTATCC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	793, 936, 1122
BlnI	CCTAGG	1 cut(s)	496
BlsI	GCNGC	3 cut(s)	794, 937, 1123
Bme1390I	CCNGG	3 cut(s)	589, 696, 1006
Bme18I	GGWCC	2 cut(s)	493, 602
BmgT120I	GGNCC	3 cut(s)	493, 518, 602
BmiI	GGNNCC	2 cut(s)	586, 700
BmrFI	CCNGG	3 cut(s)	589, 696, 1006
BmsI	GCATC	3 cut(s)	256, 262, 622
BpmI	CTGGAG	2 cut(s)	537, 610
Bpu14I	TTCGAA	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	637
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	3 cut(s)	496, 694, 1005
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	905, 1085
Bse1I	ACTGG	1 cut(s)	586
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	3 cut(s)	589, 696, 1006
BseDI	CCNNGG	3 cut(s)	496, 694, 1005
BseGI	GGATG	1 cut(s)	572
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	905, 1085
BseMII	CTCAG	1 cut(s)	687
BseNI	ACTGG	1 cut(s)	586
BseRI	GAGGAG	1 cut(s)	1064
BseSI	GKGCMC	1 cut(s)	631
BseXI	GCAGC	2 cut(s)	779, 922
BsgI	GTGCAG	1 cut(s)	951
Bsh1236I	CGCG	1 cut(s)	809
BshFI	GGCC	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	631
BslI	CCNNNNNNNGG	2 cut(s)	905, 1085
BsmAI	GTCTC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	519
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp143I	GATC	4 cut(s)	58, 432, 525, 698
BspACI	CCGC	3 cut(s)	275, 444, 809
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	1 cut(s)	686
BspFNI	CGCG	1 cut(s)	809
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	586, 700
BspPI	GGATC	3 cut(s)	66, 693, 706
BspT104I	TTCGAA	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	586
BssECI	CCNNGG	3 cut(s)	496, 694, 1005
BssMI	GATC	4 cut(s)	58, 432, 525, 698
BssT1I	CCWWGG	1 cut(s)	496
Bst2UI	CCWGG	3 cut(s)	589, 696, 1006
Bst4CI	ACNGT	4 cut(s)	292, 544, 1001, 1092
Bst6I	CTCTTC	3 cut(s)	303, 483, 1020
BstBAI	YACGTR	1 cut(s)	637
BstBI	TTCGAA	1 cut(s)	72
BstDEI	CTNAG	3 cut(s)	326, 673, 985
BstF5I	GGATG	1 cut(s)	572
BstFNI	CGCG	1 cut(s)	809
BstKTI	GATC	4 cut(s)	61, 435, 528, 701
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	4 cut(s)	58, 432, 525, 698
BstNI	CCWGG	3 cut(s)	589, 696, 1006
BstSCI	CCNGG	3 cut(s)	587, 694, 1004
BstSFI	CTRYAG	1 cut(s)	930
BstSLI	GKGCMC	1 cut(s)	631
BstUI	CGCG	1 cut(s)	809
BstV1I	GCAGC	2 cut(s)	779, 922
BstX2I	RGATCY	2 cut(s)	58, 698
BstYI	RGATCY	2 cut(s)	58, 698
BsuI	GTATCC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	519
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	572
BtsI	GCAGTG	2 cut(s)	417, 892
BtsIMutI	CAGTG	4 cut(s)	282, 417, 535, 892
CaiI	CAGNNNCTG	1 cut(s)	1005
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	3 cut(s)	493, 518, 602
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	1 cut(s)	452
CviJI	RGCY	9 cut(s)	134, 173, 480, 519, 745, 792, 829, 935, 1071
CviKI_1	RGCY	9 cut(s)	134, 173, 480, 519, 745, 792, 829, 935, 1071
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	3 cut(s)	326, 673, 985
DpnI	GATC	4 cut(s)	60, 434, 527, 700
DpnII	GATC	4 cut(s)	58, 432, 525, 698
DraI	TTTAAA	1 cut(s)	849
Eam1104I	CTCTTC	3 cut(s)	303, 483, 1020
EarI	CTCTTC	3 cut(s)	303, 483, 1020
Eco130I	CCWWGG	1 cut(s)	496
Eco32I	GATATC	1 cut(s)	691
Eco47I	GGWCC	2 cut(s)	493, 602
EcoO109I	RGGNCCY	2 cut(s)	493, 602
EcoRII	CCWGG	3 cut(s)	587, 694, 1004
EcoRV	GATATC	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	1 cut(s)	455
FatI	CATG	1 cut(s)	451
FauI	CCCGC	1 cut(s)	451
Fnu4HI	GCNGC	3 cut(s)	793, 936, 1122
FokI	GGATG	1 cut(s)	559
Fsp4HI	GCNGC	3 cut(s)	793, 936, 1122
FspBI	CTAG	2 cut(s)	497, 939
GluI	GCNGC	3 cut(s)	793, 936, 1122
GsuI	CTGGAG	2 cut(s)	537, 610
HaeIII	GGCC	1 cut(s)	519
Hin1II	CATG	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	4 cut(s)	65, 160, 313, 379
HpaI	GTTAAC	1 cut(s)	646
HphI	GGTGA	3 cut(s)	22, 355, 1117
Hpy166II	GTNNAC	6 cut(s)	464, 533, 629, 646, 1088, 1108
Hpy188I	TCNGA	2 cut(s)	487, 676
Hpy188III	TCNNGA	7 cut(s)	62, 201, 430, 452, 554, 576, 749
Hpy8I	GTNNAC	6 cut(s)	464, 533, 629, 646, 1088, 1108
HpyAV	CCTTC	4 cut(s)	68, 128, 781, 782
HpyCH4III	ACNGT	4 cut(s)	292, 544, 1001, 1092
HpyCH4IV	ACGT	1 cut(s)	636
HpyCH4V	TGCA	6 cut(s)	187, 438, 597, 629, 885, 968
HpyF3I	CTNAG	3 cut(s)	326, 673, 985
HpySE526I	ACGT	1 cut(s)	636
Hsp92II	CATG	1 cut(s)	455
KspAI	GTTAAC	1 cut(s)	646
Kzo9I	GATC	4 cut(s)	58, 432, 525, 698
Lsp1109I	GCAGC	2 cut(s)	779, 922
LweI	GCATC	3 cut(s)	256, 262, 622
MaeI	CTAG	2 cut(s)	497, 939
MaeII	ACGT	1 cut(s)	636
MaeIII	GTNAC	4 cut(s)	280, 292, 376, 947
MalI	GATC	4 cut(s)	60, 434, 527, 700
MboI	GATC	4 cut(s)	58, 432, 525, 698
MboII	GAAGA	6 cut(s)	52, 290, 500, 689, 889, 1037
MflI	RGATCY	2 cut(s)	58, 698
MhlI	GDGCHC	1 cut(s)	631
MluCI	AATT	7 cut(s)	13, 25, 143, 240, 367, 682, 777
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	9 cut(s)	484, 557, 561, 682, 715, 910, 1082, 1085, 1096
MseI	TTAA	6 cut(s)	129, 191, 243, 645, 776, 848
MspR9I	CCNGG	3 cut(s)	589, 696, 1006
MvaI	CCWGG	3 cut(s)	589, 696, 1006
MvnI	CGCG	1 cut(s)	809
NdeII	GATC	4 cut(s)	58, 432, 525, 698
NlaIII	CATG	1 cut(s)	455
NlaIV	GGNNCC	2 cut(s)	586, 700
NmuCI	GTSAC	4 cut(s)	280, 292, 376, 947
NspV	TTCGAA	1 cut(s)	72
PagI	TCATGA	1 cut(s)	451
PfeI	GAWTC	3 cut(s)	65, 160, 313
PkrI	GCNGC	3 cut(s)	794, 937, 1123
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Ppu21I	YACGTR	1 cut(s)	637
PpuMI	RGGWCCY	2 cut(s)	493, 602
Psp5II	RGGWCCY	2 cut(s)	493, 602
Psp6I	CCWGG	3 cut(s)	587, 694, 1004
PspGI	CCWGG	3 cut(s)	587, 694, 1004
PspN4I	GGNNCC	2 cut(s)	586, 700
PspPI	GGNCC	3 cut(s)	493, 518, 602
PspPPI	RGGWCCY	2 cut(s)	493, 602
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
PstNI	CAGNNNCTG	1 cut(s)	1005
PsuI	RGATCY	2 cut(s)	58, 698
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SaqAI	TTAA	6 cut(s)	129, 191, 243, 645, 776, 848
SatI	GCNGC	3 cut(s)	793, 936, 1122
Sau3AI	GATC	4 cut(s)	58, 432, 525, 698
Sau96I	GGNCC	3 cut(s)	493, 518, 602
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	3 cut(s)	589, 696, 1006
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	3 cut(s)	256, 262, 622
SfcI	CTRYAG	1 cut(s)	930
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	2 cut(s)	493, 602
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
Sse9I	AATT	7 cut(s)	13, 25, 143, 240, 367, 682, 777
SsiI	CCGC	3 cut(s)	275, 444, 809
SspMI	CTAG	2 cut(s)	497, 939
StyD4I	CCNGG	3 cut(s)	587, 694, 1004
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	4 cut(s)	292, 544, 1001, 1092
TaiI	ACGT	1 cut(s)	639
TaqI	TCGA	1 cut(s)	72
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	7 cut(s)	13, 25, 143, 240, 367, 682, 777
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	3 cut(s)	65, 160, 313
Tru1I	TTAA	6 cut(s)	129, 191, 243, 645, 776, 848
Tru9I	TTAA	6 cut(s)	129, 191, 243, 645, 776, 848
TscAI	CASTG	4 cut(s)	289, 417, 535, 892
TseFI	GTSAC	4 cut(s)	280, 292, 376, 947
TseI	GCWGC	3 cut(s)	792, 935, 1121
Tsp45I	GTSAC	4 cut(s)	280, 292, 376, 947
TspDTI	ATGAA	7 cut(s)	87, 166, 468, 561, 870, 876, 949
TspGWI	ACGGA	1 cut(s)	663
TspRI	CASTG	4 cut(s)	289, 417, 535, 892
VneI	GTGCAC	1 cut(s)	627
VpaK11BI	GGWCC	2 cut(s)	493, 602
XapI	RAATTY	2 cut(s)	13, 143
XmaJI	CCTAGG	1 cut(s)	496
XspI	CTAG	2 cut(s)	497, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.