Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Forward (+)

32252171 .. 32253449

Gene Structure 1279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033792

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAAACAGGATGAATTTTTTGTTAAGCTTATCCAGAGGAAGAGTGCTGGTTGGTTCAATGTGGATTCTGCTGAAGATCTGCTTGGCAATATTCTTTCAAGGCTTCCAGTTAAGCTCCTTCTAACTATCAAGGTCATTTCTAAACTTTGGCATAGATTGATTTGCAGTCCAAATTTCACTAGACTGCATTTAAGCAAATCAAGAGAAAAGTCCATCTATATACTTTATCCTTTTATGGATGCTAAAAGAAGTCTGTATTTCATGGATGCTGACGGGGTGATCACTGGAACAATCAGTCTTCCTGGTTTAAAAAATATACCATCTCTATGTATGATTGCTTCCTACAATGGGTTGATATGTTTCACTAATTATCCTTGGTTTCCGCATTCATTTAAGACTCGAGCAGTAGTGACAGGCTTGGAAATCCGAATTTGCAATCCTGCAACTCGTGAAGTTTGGCTACTTCCTAATGGGAGCCCACTGAAACAGGAGCAAGGAATTGGGGTTGCCTTTGGCCCAGGAATCAGTGAGTATAGGGTACTTCGGTTTTTCTGTTCCAAATCTGATGTAATTCACCCTGAGTGTGAGATATTTTCATCAAGCACTGGAACCTGGAGAAGCTTAGGTTTTGTTCAGCATTGTCCTATGGGTGCACATCATGTATTTGTTCATGGAAAAGTTTTTTGGTTTATTCCTTCGGAAGAAGATCATAATATCCCTGGATCCATTCTTTCAGTTGGTTTGGACGAAGGTTTTGGAATTATCAGACTTCCAGTTGCGGTCACTGAACATGCCTTCTTGGTTGATCTTGAAGGTCAATTATCACTGATCGTTGTATTTGATGATGATGACACTATGGTTATATGGATTTTGAAGGATGAAAATGAGTCCATTTGGGAGGAGAAATGTCGTGATGGTATTCCCTACGAAACTGTGGAGTGTCTTGACTCTGTAGCTGCAAGAAAAAATGACATTGTTTTCATCACTGAAGAACGCTATTTCATCTTCAGTATGATAAAAATGTCCTGGAAAGAAATTCATTTCAAAGAACTATTTGAACAACATTCTCCTGTTGTTTTTACGTACACAGAAAGCCTCCTCCCTTGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

371

Amino Acids

42.32

Weight (kDa)

5.92

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	107 - 309	1.2e-16	F-box associated beta propeller domain
FBA_1	PF07734	142 - 368	2.3e-13	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	383, 779
AclWI	GGATC	2 cut(s)	717, 730
AcsI	RAATTY	4 cut(s)	14, 172, 429, 1035
AcuI	CTGAAG	3 cut(s)	93, 991, 1008
AfaI	GTAC	2 cut(s)	540, 1085
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	6 cut(s)	58, 99, 812, 874, 1045, 1058
AjnI	CCWGG	5 cut(s)	301, 517, 611, 718, 1025
AjuI	GAANNNNNNNTTGG	4 cut(s)	66, 98, 667, 699
AluBI	AGCT	4 cut(s)	28, 115, 621, 956
AluI	AGCT	4 cut(s)	28, 115, 621, 956
Alw21I	GWGCWC	1 cut(s)	655
Alw44I	GTGCAC	1 cut(s)	651
AlwI	GGATC	2 cut(s)	717, 730
Ama87I	CYCGRG	1 cut(s)	399
AoxI	GGCC	1 cut(s)	514
ApaLI	GTGCAC	1 cut(s)	651
ApeKI	GCWGC	1 cut(s)	956
ApoI	RAATTY	4 cut(s)	14, 172, 429, 1035
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
AspS9I	GGNCC	1 cut(s)	515
AsuHPI	GGTGA	2 cut(s)	289, 566
AvaI	CYCGRG	1 cut(s)	399
BaeGI	GKGCMC	1 cut(s)	655
BaeI	ACNNNNGTAYC	2 cut(s)	530, 563
BamHI	GGATCC	1 cut(s)	722
BanII	GRGCYC	1 cut(s)	479
BarI	GAAGNNNNNNTAC	4 cut(s)	322, 354, 444, 476
BauI	CACGAG	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	655
BbvI	GCAGC	1 cut(s)	943
BccI	CCATC	3 cut(s)	221, 328, 908
BciT130I	CCWGG	5 cut(s)	303, 519, 613, 720, 1027
BclI	TGATCA	1 cut(s)	279
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	951
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	1 cut(s)	957
BlsI	GCNGC	1 cut(s)	958
Bme1390I	CCNGG	5 cut(s)	303, 519, 613, 720, 1027
BmeT110I	CYCGRG	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	3 cut(s)	476, 610, 724
BmrFI	CCNGG	5 cut(s)	303, 519, 613, 720, 1027
BmsI	GCATC	2 cut(s)	229, 256
BpiI	GAAGAC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	634
Bpu10I	CCTNAGC	1 cut(s)	622
BsaAI	YACGTR	1 cut(s)	1083
BsaJI	CCNNGG	3 cut(s)	374, 517, 718
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse1I	ACTGG	4 cut(s)	107, 289, 610, 773
BseBI	CCWGG	5 cut(s)	303, 519, 613, 720, 1027
BseDI	CCNNGG	3 cut(s)	374, 517, 718
BseGI	GGATG	4 cut(s)	16, 244, 271, 883
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	4 cut(s)	107, 289, 610, 773
BseRI	GAGGAG	2 cut(s)	914, 1088
BseSI	GKGCMC	1 cut(s)	655
BseXI	GCAGC	1 cut(s)	943
BshFI	GGCC	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	655
BsiHKCI	CYCGRG	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	516
BsoBI	CYCGRG	1 cut(s)	399
Bsp1286I	GDGCHC	2 cut(s)	479, 655
Bsp143I	GATC	6 cut(s)	76, 279, 706, 722, 805, 828
BspACI	CCGC	2 cut(s)	383, 779
BspANI	GGCC	1 cut(s)	516
BspCNI	CTCAG	1 cut(s)	571
BspLI	GGNNCC	3 cut(s)	476, 610, 724
BspPI	GGATC	2 cut(s)	717, 730
BsrI	ACTGG	4 cut(s)	107, 289, 610, 773
BssECI	CCNNGG	3 cut(s)	374, 517, 718
BssMI	GATC	6 cut(s)	76, 279, 706, 722, 805, 828
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	5 cut(s)	303, 519, 613, 720, 1027
Bst4CI	ACNGT	1 cut(s)	934
Bst6I	CTCTTC	1 cut(s)	35
BstBAI	YACGTR	1 cut(s)	1083
BstDEI	CTNAG	2 cut(s)	579, 622
BstF5I	GGATG	4 cut(s)	16, 244, 271, 883
BstKTI	GATC	6 cut(s)	79, 282, 709, 725, 808, 831
BstMBI	GATC	6 cut(s)	76, 279, 706, 722, 805, 828
BstNI	CCWGG	5 cut(s)	303, 519, 613, 720, 1027
BstNSI	RCATGY	1 cut(s)	794
BstSCI	CCNGG	5 cut(s)	301, 517, 611, 718, 1025
BstSFI	CTRYAG	1 cut(s)	951
BstSLI	GKGCMC	1 cut(s)	655
BstSNI	TACGTA	1 cut(s)	1083
BstV1I	GCAGC	1 cut(s)	943
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	2 cut(s)	76, 722
BstYI	RGATCY	2 cut(s)	76, 722
BsuRI	GGCC	1 cut(s)	516
BtsCI	GGATG	4 cut(s)	16, 244, 271, 883
BtsIMutI	CAGTG	8 cut(s)	282, 479, 532, 603, 783, 824, 984, 1108
Cfr13I	GGNCC	1 cut(s)	515
Csp6I	GTAC	2 cut(s)	539, 1084
CviAII	CATG	4 cut(s)	262, 659, 671, 791
CviQI	GTAC	2 cut(s)	539, 1084
DdeI	CTNAG	2 cut(s)	579, 622
DpnI	GATC	6 cut(s)	78, 281, 708, 724, 807, 830
DpnII	GATC	6 cut(s)	76, 279, 706, 722, 805, 828
DraI	TTTAAA	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco105I	TACGTA	1 cut(s)	1083
Eco130I	CCWWGG	1 cut(s)	374
Eco24I	GRGCYC	1 cut(s)	479
Eco57I	CTGAAG	3 cut(s)	93, 991, 1008
Eco88I	CYCGRG	1 cut(s)	399
EcoRII	CCWGG	5 cut(s)	301, 517, 611, 718, 1025
EcoT14I	CCWWGG	1 cut(s)	374
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	4 cut(s)	265, 662, 674, 794
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FatI	CATG	4 cut(s)	261, 658, 670, 790
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	957
FokI	GGATG	4 cut(s)	23, 251, 278, 890
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	1 cut(s)	957
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	1 cut(s)	957
GsuI	CTGGAG	1 cut(s)	634
HaeIII	GGCC	1 cut(s)	516
Hin1II	CATG	4 cut(s)	265, 662, 674, 794
HindIII	AAGCTT	2 cut(s)	26, 619
HinfI	GANTC	5 cut(s)	65, 397, 522, 887, 947
HphI	GGTGA	2 cut(s)	289, 566
Hpy166II	GTNNAC	2 cut(s)	653, 1086
Hpy188I	TCNGA	4 cut(s)	428, 565, 700, 767
Hpy188III	TCNNGA	6 cut(s)	34, 201, 449, 809, 911, 944
Hpy8I	GTNNAC	2 cut(s)	653, 1086
HpyAV	CCTTC	6 cut(s)	128, 705, 743, 805, 806, 868
HpyCH4III	ACNGT	1 cut(s)	934
HpyCH4IV	ACGT	1 cut(s)	1082
HpyCH4V	TGCA	6 cut(s)	165, 187, 435, 443, 653, 959
HpyF3I	CTNAG	2 cut(s)	579, 622
HpySE526I	ACGT	1 cut(s)	1082
Hsp92II	CATG	4 cut(s)	265, 662, 674, 794
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	6 cut(s)	76, 279, 706, 722, 805, 828
LmnI	GCTCC	3 cut(s)	120, 474, 490
Lsp1109I	GCAGC	1 cut(s)	943
LweI	GCATC	2 cut(s)	229, 256
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	1082
MaeIII	GTNAC	3 cut(s)	409, 781, 1106
MalI	GATC	6 cut(s)	78, 281, 708, 724, 807, 830
MboI	GATC	6 cut(s)	76, 279, 706, 722, 805, 828
MboII	GAAGA	7 cut(s)	52, 86, 290, 713, 716, 997, 1001
MflI	RGATCY	2 cut(s)	76, 722
MhlI	GDGCHC	2 cut(s)	479, 655
MluCI	AATT	9 cut(s)	14, 172, 367, 429, 498, 570, 759, 818, 1035
MlyI	GAGTC	3 cut(s)	391, 896, 941
MnlI	CCTC	4 cut(s)	30, 892, 1106, 1109
MseI	TTAA	5 cut(s)	24, 111, 191, 308, 393
MslI	CAYNNNNRTG	1 cut(s)	325
MspR9I	CCNGG	5 cut(s)	303, 519, 613, 720, 1027
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	5 cut(s)	303, 519, 613, 720, 1027
NdeII	GATC	6 cut(s)	76, 279, 706, 722, 805, 828
NlaIII	CATG	4 cut(s)	265, 662, 674, 794
NlaIV	GGNNCC	3 cut(s)	476, 610, 724
NmuCI	GTSAC	3 cut(s)	409, 781, 1106
NspI	RCATGY	1 cut(s)	794
PaeR7I	CTCGAG	1 cut(s)	399
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	65, 522
PfoI	TCCNGGA	1 cut(s)	1025
PkrI	GCNGC	1 cut(s)	958
PleI	GAGTC	3 cut(s)	391, 895, 941
PpsI	GAGTC	3 cut(s)	391, 895, 941
Ppu21I	YACGTR	1 cut(s)	1083
Psp6I	CCWGG	5 cut(s)	301, 517, 611, 718, 1025
PspGI	CCWGG	5 cut(s)	301, 517, 611, 718, 1025
PspN4I	GGNNCC	3 cut(s)	476, 610, 724
PspPI	GGNCC	1 cut(s)	515
PspXI	VCTCGAGB	1 cut(s)	399
PsuI	RGATCY	2 cut(s)	76, 722
RsaI	GTAC	2 cut(s)	540, 1085
RsaNI	GTAC	2 cut(s)	539, 1084
RseI	CAYNNNNRTG	1 cut(s)	325
SaqAI	TTAA	5 cut(s)	24, 111, 191, 308, 393
SatI	GCNGC	1 cut(s)	957
Sau3AI	GATC	6 cut(s)	76, 279, 706, 722, 805, 828
Sau96I	GGNCC	1 cut(s)	515
SchI	GAGTC	3 cut(s)	391, 896, 941
ScrFI	CCNGG	5 cut(s)	303, 519, 613, 720, 1027
SduI	GDGCHC	2 cut(s)	479, 655
SfaNI	GCATC	2 cut(s)	229, 256
SfcI	CTRYAG	1 cut(s)	951
Sfr274I	CTCGAG	1 cut(s)	399
SlaI	CTCGAG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
SnaBI	TACGTA	1 cut(s)	1083
Sse9I	AATT	9 cut(s)	14, 172, 367, 429, 498, 570, 759, 818, 1035
SsiI	CCGC	2 cut(s)	383, 779
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	5 cut(s)	301, 517, 611, 718, 1025
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	934
TaiI	ACGT	1 cut(s)	1085
TaqI	TCGA	1 cut(s)	400
TasI	AATT	9 cut(s)	14, 172, 367, 429, 498, 570, 759, 818, 1035
TfiI	GAWTC	2 cut(s)	65, 522
Tru1I	TTAA	5 cut(s)	24, 111, 191, 308, 393
Tru9I	TTAA	5 cut(s)	24, 111, 191, 308, 393
TscAI	CASTG	7 cut(s)	289, 486, 532, 610, 790, 831, 991
TseFI	GTSAC	3 cut(s)	409, 781, 1106
TseI	GCWGC	1 cut(s)	956
Tsp45I	GTSAC	3 cut(s)	409, 781, 1106
TspRI	CASTG	7 cut(s)	289, 486, 532, 610, 790, 831, 991
VneI	GTGCAC	1 cut(s)	651
XapI	RAATTY	4 cut(s)	14, 172, 429, 1035
XceI	RCATGY	1 cut(s)	794
XhoI	CTCGAG	1 cut(s)	399
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.