Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Reverse (-)

61580238 .. 61588735

Gene Structure 8498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00043270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGAAATGGTGAATTCTGTTGGTAATTGTGTCCAAAGGAAGAATGTTGAGTGGTTGGATCTGCAATCTTTCGAAGGTGTGGTCGATAATGTACTTTCATTGCTTCCTGTCAAGTGCCTTCTAAATGTTAAGGCTGTTTCTAAATTCTTGCGTGATTTGATTCGTAGTCAAGCTTTCATTAGATTGCATTTAAGTCGGTCAAGAGAAAATGCCTTGTATATATTTTTCCCTTTTATGCCAATTAACAGAAACATATACATCATTGATGCTGATGCGGTAGTCACTGAAACAGTCACTCTTCCTACTGATGAGAATCTATCAACTCTTAGTATGGTTTGTTCCTATAATGGTTTGATTTGTCTCTCCAATTTTCCCGTGACTCTTTACTCATATAGTTCTCAAGGAGTGGCAGTGGCAGACTTGGAAATCCTGATCTGCAATCCCGCCACTCATGAAGTTGGTTTACTTCCTAAATGTAGCCCATCGGAAGAGGACCTAGGCATTGGTGTTGCCTTTGGCCCAGAGATCAGTGAGTATAAAGTATTTCGGTTTTTCCGTTCCAAATCCAATTCTGAAATAGTCCTCCCTGACCCAGAGGTTGTGCCATATTGGTTTTTGCTTCCCACATCCAGACCTGAAACAGTCCTCCCTCCAGAGTGTGAGATATATTCATCCAGAACTGGAACCTGGAGTTGCATAGGTCCTGTTCAGCATCGTCCTATGGGTGCACATCACGTATTTGTTAACGGAAAAGTTTATTGGTTTATTCCCTCAGAAGAAAATTATGATATCCCTGGATCCATTCTTTCAGTTGATATGGAGGAACATTTTGAAAATGAAAATGAATATGTTTGGGAGAAGAAATGCAGTGCTGGTATTCCCTACAAAGGAATGATGGAGGAACTTCACTCTGTAGCTGCTAGAGAAAGTGACATTTTTTTCATAACTGCACACGATTATATCATCTTAGACACAGATGACAGTTCCTGGGAACTTGTTGAGTTTGAAGAGTTTGAACCTAATGCTCACGCTGTTTTTCCATACGCAGAAAGTCTCCTTCCTTTTTCATTGAATATCATATCTTGTGTTTTAAATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

366

Amino Acids

41.47

Weight (kDa)

4.61

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	92 - 272	7.3e-08	F-box associated beta propeller domain
FBA_1	PF07734	140 - 274	9.1e-07	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	275, 444
AclWI	GGATC	3 cut(s)	66, 792, 805
AcsI	RAATTY	2 cut(s)	13, 143
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	887
AgsI	TTSAA	4 cut(s)	833, 1007, 1016, 1072
AjnI	CCWGG	3 cut(s)	686, 793, 986
AjuI	GAANNNNNNNTTGG	2 cut(s)	742, 774
AluBI	AGCT	2 cut(s)	173, 917
AluI	AGCT	2 cut(s)	173, 917
Alw21I	GWGCWC	1 cut(s)	730
Alw26I	GTCTC	2 cut(s)	365, 1058
Alw44I	GTGCAC	1 cut(s)	726
AlwI	GGATC	3 cut(s)	66, 792, 805
AlwNI	CAGNNNCTG	1 cut(s)	987
AoxI	GGCC	1 cut(s)	517
ApaLI	GTGCAC	1 cut(s)	726
ApeKI	GCWGC	1 cut(s)	917
ApoI	RAATTY	2 cut(s)	13, 143
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AspA2I	CCTAGG	1 cut(s)	496
AspS9I	GGNCC	3 cut(s)	493, 518, 701
AsuHPI	GGTGA	1 cut(s)	22
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	2 cut(s)	493, 701
AvrII	CCTAGG	1 cut(s)	496
BaeGI	GKGCMC	1 cut(s)	730
BamHI	GGATCC	1 cut(s)	797
BarI	GAAGNNNNNNTAC	2 cut(s)	447, 479
Bbv12I	GWGCWC	1 cut(s)	730
BbvI	GCAGC	1 cut(s)	904
BccI	CCATC	2 cut(s)	490, 889
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	3 cut(s)	688, 795, 988
BcoDI	GTCTC	2 cut(s)	365, 1058
BfaI	CTAG	2 cut(s)	497, 921
BfmI	CTRYAG	1 cut(s)	912
BisI	GCNGC	1 cut(s)	918
BlnI	CCTAGG	1 cut(s)	496
BlsI	GCNGC	1 cut(s)	919
Bme1390I	CCNGG	3 cut(s)	688, 795, 988
Bme18I	GGWCC	2 cut(s)	493, 701
BmgT120I	GGNCC	3 cut(s)	493, 518, 701
BmiI	GGNNCC	2 cut(s)	685, 799
BmrFI	CCNGG	3 cut(s)	688, 795, 988
BmsI	GCATC	3 cut(s)	256, 262, 721
BpmI	CTGGAG	2 cut(s)	636, 709
Bpu14I	TTCGAA	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	736
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	3 cut(s)	496, 793, 987
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	1 cut(s)	887
Bse1I	ACTGG	1 cut(s)	685
Bse3DI	GCAATG	1 cut(s)	98
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	3 cut(s)	688, 795, 988
BseDI	CCNNGG	3 cut(s)	496, 793, 987
BseGI	GGATG	2 cut(s)	626, 671
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	887
BseMI	GCAATG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	786
BseNI	ACTGG	1 cut(s)	685
BseSI	GKGCMC	1 cut(s)	730
BseXI	GCAGC	1 cut(s)	904
BsgI	GTGCAG	1 cut(s)	933
BshFI	GGCC	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	730
BslI	CCNNNNNNNGG	1 cut(s)	887
BsmAI	GTCTC	2 cut(s)	365, 1058
BsnI	GGCC	1 cut(s)	519
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	730
Bsp143I	GATC	4 cut(s)	58, 432, 525, 797
BspACI	CCGC	2 cut(s)	275, 444
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	1 cut(s)	785
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	685, 799
BspPI	GGATC	3 cut(s)	66, 792, 805
BspT104I	TTCGAA	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	685
BssECI	CCNNGG	3 cut(s)	496, 793, 987
BssMI	GATC	4 cut(s)	58, 432, 525, 797
BssT1I	CCWWGG	1 cut(s)	496
Bst2UI	CCWGG	3 cut(s)	688, 795, 988
Bst4CI	ACNGT	3 cut(s)	292, 643, 983
Bst6I	CTCTTC	3 cut(s)	303, 483, 1002
BstBAI	YACGTR	1 cut(s)	736
BstBI	TTCGAA	1 cut(s)	72
BstDEI	CTNAG	3 cut(s)	326, 772, 967
BstF5I	GGATG	2 cut(s)	626, 671
BstKTI	GATC	4 cut(s)	61, 435, 528, 800
BstMAI	GTCTC	2 cut(s)	365, 1058
BstMBI	GATC	4 cut(s)	58, 432, 525, 797
BstNI	CCWGG	3 cut(s)	688, 795, 988
BstSCI	CCNGG	3 cut(s)	686, 793, 986
BstSFI	CTRYAG	1 cut(s)	912
BstSLI	GKGCMC	1 cut(s)	730
BstV1I	GCAGC	1 cut(s)	904
BstX2I	RGATCY	2 cut(s)	58, 797
BstYI	RGATCY	2 cut(s)	58, 797
BsuRI	GGCC	1 cut(s)	519
BtsCI	GGATG	2 cut(s)	626, 671
BtsI	GCAGTG	2 cut(s)	417, 874
BtsIMutI	CAGTG	4 cut(s)	282, 417, 535, 874
CaiI	CAGNNNCTG	1 cut(s)	987
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	3 cut(s)	493, 518, 701
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	1 cut(s)	452
CviJI	RGCY	5 cut(s)	134, 173, 480, 519, 917
CviKI_1	RGCY	5 cut(s)	134, 173, 480, 519, 917
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	3 cut(s)	326, 772, 967
DpnI	GATC	4 cut(s)	60, 434, 527, 799
DpnII	GATC	4 cut(s)	58, 432, 525, 797
DraI	TTTAAA	1 cut(s)	1092
Eam1104I	CTCTTC	3 cut(s)	303, 483, 1002
EarI	CTCTTC	3 cut(s)	303, 483, 1002
Eco130I	CCWWGG	1 cut(s)	496
Eco32I	GATATC	1 cut(s)	790
Eco47I	GGWCC	2 cut(s)	493, 701
EcoO109I	RGGNCCY	2 cut(s)	493, 701
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	3 cut(s)	686, 793, 986
EcoRV	GATATC	1 cut(s)	790
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	1 cut(s)	455
FatI	CATG	1 cut(s)	451
FauI	CCCGC	1 cut(s)	451
Fnu4HI	GCNGC	1 cut(s)	918
FokI	GGATG	2 cut(s)	613, 658
Fsp4HI	GCNGC	1 cut(s)	918
FspBI	CTAG	2 cut(s)	497, 921
GluI	GCNGC	1 cut(s)	918
GsuI	CTGGAG	2 cut(s)	636, 709
HaeIII	GGCC	1 cut(s)	519
Hin1II	CATG	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	3 cut(s)	160, 313, 379
HpaI	GTTAAC	1 cut(s)	745
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	3 cut(s)	464, 728, 745
Hpy188I	TCNGA	3 cut(s)	487, 574, 775
Hpy188III	TCNNGA	6 cut(s)	201, 430, 452, 630, 653, 675
Hpy8I	GTNNAC	3 cut(s)	464, 728, 745
HpyAV	CCTTC	3 cut(s)	68, 128, 1067
HpyCH4III	ACNGT	3 cut(s)	292, 643, 983
HpyCH4IV	ACGT	1 cut(s)	735
HpyCH4V	TGCA	7 cut(s)	64, 187, 438, 696, 728, 867, 950
HpyF3I	CTNAG	3 cut(s)	326, 772, 967
HpySE526I	ACGT	1 cut(s)	735
Hsp92II	CATG	1 cut(s)	455
KspAI	GTTAAC	1 cut(s)	745
Kzo9I	GATC	4 cut(s)	58, 432, 525, 797
Lsp1109I	GCAGC	1 cut(s)	904
LweI	GCATC	3 cut(s)	256, 262, 721
MaeI	CTAG	2 cut(s)	497, 921
MaeII	ACGT	1 cut(s)	735
MaeIII	GTNAC	4 cut(s)	280, 292, 376, 929
MalI	GATC	4 cut(s)	60, 434, 527, 799
MboI	GATC	4 cut(s)	58, 432, 525, 797
MboII	GAAGA	6 cut(s)	52, 290, 500, 788, 871, 1019
MflI	RGATCY	2 cut(s)	58, 797
MhlI	GDGCHC	1 cut(s)	730
MluCI	AATT	7 cut(s)	13, 25, 143, 240, 367, 568, 781
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	8 cut(s)	484, 589, 593, 656, 660, 781, 814, 892
MseI	TTAA	5 cut(s)	129, 191, 243, 744, 1091
MspR9I	CCNGG	3 cut(s)	688, 795, 988
MvaI	CCWGG	3 cut(s)	688, 795, 988
NdeII	GATC	4 cut(s)	58, 432, 525, 797
NlaIII	CATG	1 cut(s)	455
NlaIV	GGNNCC	2 cut(s)	685, 799
NmuCI	GTSAC	4 cut(s)	280, 292, 376, 929
NspV	TTCGAA	1 cut(s)	72
PagI	TCATGA	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	1 cut(s)	553
PfeI	GAWTC	2 cut(s)	160, 313
PkrI	GCNGC	1 cut(s)	919
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Ppu21I	YACGTR	1 cut(s)	736
PpuMI	RGGWCCY	2 cut(s)	493, 701
Psp5II	RGGWCCY	2 cut(s)	493, 701
Psp6I	CCWGG	3 cut(s)	686, 793, 986
PspGI	CCWGG	3 cut(s)	686, 793, 986
PspN4I	GGNNCC	2 cut(s)	685, 799
PspPI	GGNCC	3 cut(s)	493, 518, 701
PspPPI	RGGWCCY	2 cut(s)	493, 701
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
PstNI	CAGNNNCTG	1 cut(s)	987
PsuI	RGATCY	2 cut(s)	58, 797
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SaqAI	TTAA	5 cut(s)	129, 191, 243, 744, 1091
SatI	GCNGC	1 cut(s)	918
Sau3AI	GATC	4 cut(s)	58, 432, 525, 797
Sau96I	GGNCC	3 cut(s)	493, 518, 701
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	3 cut(s)	688, 795, 988
SduI	GDGCHC	1 cut(s)	730
SfaNI	GCATC	3 cut(s)	256, 262, 721
SfcI	CTRYAG	1 cut(s)	912
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	2 cut(s)	493, 701
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
Sse9I	AATT	7 cut(s)	13, 25, 143, 240, 367, 568, 781
SsiI	CCGC	2 cut(s)	275, 444
SspMI	CTAG	2 cut(s)	497, 921
StyD4I	CCNGG	3 cut(s)	686, 793, 986
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	3 cut(s)	292, 643, 983
TaiI	ACGT	1 cut(s)	738
TaqI	TCGA	2 cut(s)	72, 84
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	7 cut(s)	13, 25, 143, 240, 367, 568, 781
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	160, 313
Tru1I	TTAA	5 cut(s)	129, 191, 243, 744, 1091
Tru9I	TTAA	5 cut(s)	129, 191, 243, 744, 1091
TscAI	CASTG	4 cut(s)	289, 417, 535, 874
TseFI	GTSAC	4 cut(s)	280, 292, 376, 929
TseI	GCWGC	1 cut(s)	917
Tsp45I	GTSAC	4 cut(s)	280, 292, 376, 929
TspDTI	ATGAA	8 cut(s)	87, 166, 468, 660, 852, 858, 931, 1056
TspGWI	ACGGA	2 cut(s)	545, 762
TspRI	CASTG	4 cut(s)	289, 417, 535, 874
VneI	GTGCAC	1 cut(s)	726
VpaK11BI	GGWCC	2 cut(s)	493, 701
XapI	RAATTY	2 cut(s)	13, 143
XmaJI	CCTAGG	1 cut(s)	496
XspI	CTAG	2 cut(s)	497, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.