Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Forward (+)

12674514 .. 12680140

Gene Structure 5627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G203700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGATAAATCTGTTGCAAAGTGTATCCCAAAACTTTCACGGAGGCAGAATGATAGTTGGTCTGATGTGGAAACTGTGGAAGATGTGCTTGCCAATATTCTTTCAAGGCTTCCAGTCAAGTGCCTCATACGTTCTAAGGCTGTTTCTAGACTTTGGCACAAATTGATTAGCAGTCCATATTTCACTAAATTGCATTTAATGCGGTCAAGAGAAAATGTGATCTATATACTTTATCCTTATATGGATGATATAAAAGAATTGCATTTGGTTGATGGTGATGGGGTAACCACCGAAGTAATCACTCTTCCTGGTTTTGAAAATGTTTCATCTCTTAGTATGATTTGTTCCTACAATGGGTTGATATGTTTCACCATTTACCCCTGGTTTCCTCACTTATATATGAGGCAACCGGTCGAGGAAGACTTGGAAATCCTAATCTGCAATCCCGCTACTCGTGAAATTCGGTTACTTCCAAGAGGTAGCCCAGCAGAACAGGAACTAGGCATTGGGGTTGCCTTTGGCCCAGGAACCAGTGATTATAGAGTATTTCGGTTTTTCTCCTCCATATTTGAAAAGCCAGTAGTCAGCCCTCAGTGTGAGATATTTTCATCAAGCACTGGAACCTGGAGAGGCATAGGTTTTGTTCAGCAATATCCTATGGGTGCAAATCACGTATTTTTTAATGGACAAGTTTACTGGTTTATTGCTTCAGAAGAAGATCATTCTACCCCTGGAAGCATTCTTTCAGTGGATATGGAGGACAACTTTAAAACCATTGAACTTCCAGAAGAAGTCACTGCACACTCCTTCCTAATTATTCTGGAAGGTTTCTTATCGTTAGTTGCTGTCTATGATGATGATCTAATTATGGATGTATGGATGTTAAAGGATGCAAATGAATCTTATTGGGAGAAGAAGTGCAGTGCTTATATTGAACACGCTGTTGAAGAGTGCATTGACTCTGTAGCTGGAAGGAATAATGAATTTTTTTTCATAACTACAGAACATTATTTTATCTTTAATACCGACAGGACTACCTGGGAGCAACTTTATCTTCAGGAGGGGTTTGGACAGGATTCTCCTGTTGTTTTTACATACACAGAAAGCCTTCTCCCCTGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

375

Amino Acids

42.93

Weight (kDa)

4.72

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	202, 447
AcsI	RAATTY	2 cut(s)	459, 983
AcuI	CTGAAG	2 cut(s)	693, 1040
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgeI	ACCGGT	1 cut(s)	409
AgsI	TTSAA	6 cut(s)	105, 317, 572, 779, 935, 947
AjnI	CCWGG	6 cut(s)	307, 380, 523, 623, 730, 1037
AjuI	GAANNNNNNNTTGG	2 cut(s)	489, 521
AluBI	AGCT	2 cut(s)	968, 1122
AluI	AGCT	2 cut(s)	968, 1122
AoxI	GGCC	1 cut(s)	520
ApoI	RAATTY	2 cut(s)	459, 983
AsiGI	ACCGGT	1 cut(s)	409
Asp700I	GAANNNNTTC	1 cut(s)	1107
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	2 cut(s)	287, 361
BarI	GAAGNNNNNNTAC	2 cut(s)	288, 320
BauI	CACGAG	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	426
BccI	CCATC	2 cut(s)	266, 272
BciT130I	CCWGG	6 cut(s)	309, 382, 525, 625, 732, 1039
BciVI	GTATCC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	147, 500
BfmI	CTRYAG	3 cut(s)	963, 999, 1117
BfuI	GTATCC	1 cut(s)	35
Bme1390I	CCNGG	6 cut(s)	309, 382, 525, 625, 732, 1039
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	529, 622
BmrFI	CCNGG	6 cut(s)	309, 382, 525, 625, 732, 1039
BmsI	GCATC	1 cut(s)	880
BpiI	GAAGAC	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	646
BsaAI	YACGTR	1 cut(s)	673
BsaBI	GATNNNNATC	1 cut(s)	858
BsaJI	CCNNGG	4 cut(s)	380, 523, 730, 1038
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	902, 932
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse118I	RCCGGY	1 cut(s)	409
Bse1I	ACTGG	5 cut(s)	113, 531, 578, 622, 701
Bse8I	GATNNNNATC	1 cut(s)	858
BseBI	CCWGG	6 cut(s)	309, 382, 525, 625, 732, 1039
BseDI	CCNNGG	4 cut(s)	380, 523, 730, 1038
BseGI	GGATG	4 cut(s)	250, 877, 885, 895
BseJI	GATNNNNATC	1 cut(s)	858
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	605
BseNI	ACTGG	5 cut(s)	113, 531, 578, 622, 701
BseRI	GAGGAG	1 cut(s)	550
BseYI	CCCAGC	1 cut(s)	484
BsgI	GTGCAG	2 cut(s)	783, 940
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	522
BshTI	ACCGGT	1 cut(s)	409
BsiEI	CGRYCG	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmI	GAATGC	1 cut(s)	738
BsnI	GGCC	1 cut(s)	522
Bsp143I	GATC	3 cut(s)	219, 718, 859
BspACI	CCGC	2 cut(s)	202, 447
BspANI	GGCC	1 cut(s)	522
BspCNI	CTCAG	1 cut(s)	604
BspLI	GGNNCC	2 cut(s)	529, 622
BsrFI	RCCGGY	1 cut(s)	409
BsrI	ACTGG	5 cut(s)	113, 531, 578, 622, 701
BssAI	RCCGGY	1 cut(s)	409
BssECI	CCNNGG	4 cut(s)	380, 523, 730, 1038
BssMI	GATC	3 cut(s)	219, 718, 859
BssSI	CACGAG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	6 cut(s)	309, 382, 525, 625, 732, 1039
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	2 cut(s)	309, 942
BstAPI	GCANNNNNTGC	1 cut(s)	199
BstBAI	YACGTR	1 cut(s)	673
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	3 cut(s)	135, 332, 591
BstEII	GGTNACC	1 cut(s)	283
BstF5I	GGATG	4 cut(s)	250, 877, 885, 895
BstKTI	GATC	3 cut(s)	222, 721, 862
BstMBI	GATC	3 cut(s)	219, 718, 859
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNI	CCWGG	6 cut(s)	309, 382, 525, 625, 732, 1039
BstPI	GGTNACC	1 cut(s)	283
BstSCI	CCNGG	6 cut(s)	307, 380, 523, 623, 730, 1037
BstSFI	CTRYAG	3 cut(s)	963, 999, 1117
BstV2I	GAAGAC	1 cut(s)	426
BsuI	GTATCC	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	522
BtsCI	GGATG	4 cut(s)	250, 877, 885, 895
BtsI	GCAGTG	2 cut(s)	795, 928
BtsIMutI	CAGTG	6 cut(s)	538, 599, 615, 753, 795, 928
Cac8I	GCNNGC	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	521
CspAI	ACCGGT	1 cut(s)	409
CviJI	RGCY	9 cut(s)	109, 140, 483, 522, 577, 588, 968, 1107, 1122
CviKI_1	RGCY	9 cut(s)	109, 140, 483, 522, 577, 588, 968, 1107, 1122
DdeI	CTNAG	3 cut(s)	135, 332, 591
DpnI	GATC	3 cut(s)	221, 720, 861
DpnII	GATC	3 cut(s)	219, 718, 859
DraI	TTTAAA	1 cut(s)	769
Eam1104I	CTCTTC	2 cut(s)	309, 942
EarI	CTCTTC	2 cut(s)	309, 942
Eco57I	CTGAAG	2 cut(s)	693, 1040
Eco91I	GGTNACC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	283
EcoRII	CCWGG	6 cut(s)	307, 380, 523, 623, 730, 1037
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FauI	CCCGC	1 cut(s)	454
FokI	GGATG	4 cut(s)	257, 884, 892, 902
FspBI	CTAG	2 cut(s)	147, 500
GsaI	CCCAGC	1 cut(s)	488
GsuI	CTGGAG	1 cut(s)	646
HaeIII	GGCC	1 cut(s)	522
HapII	CCGG	1 cut(s)	410
HinfI	GANTC	3 cut(s)	899, 959, 1076
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	2 cut(s)	287, 361
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	2 cut(s)	64, 712
Hpy188III	TCNNGA	6 cut(s)	147, 207, 455, 785, 821, 1058
Hpy8I	GTNNAC	1 cut(s)	694
HpyAV	CCTTC	4 cut(s)	817, 818, 966, 1118
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	2 cut(s)	130, 672
HpyCH4V	TGCA	9 cut(s)	17, 193, 262, 441, 665, 800, 893, 921, 954
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	3 cut(s)	135, 332, 591
HpySE526I	ACGT	2 cut(s)	130, 672
Kzo9I	GATC	3 cut(s)	219, 718, 859
LmnI	GCTCC	1 cut(s)	1042
LweI	GCATC	1 cut(s)	880
MaeI	CTAG	2 cut(s)	147, 500
MaeII	ACGT	2 cut(s)	130, 672
MaeIII	GTNAC	3 cut(s)	283, 465, 793
MalI	GATC	3 cut(s)	221, 720, 861
MboI	GATC	3 cut(s)	219, 718, 859
MboII	GAAGA	9 cut(s)	92, 296, 431, 725, 728, 800, 925, 959, 1046
MluCI	AATT	7 cut(s)	161, 188, 257, 459, 813, 864, 983
MlyI	GAGTC	1 cut(s)	953
MroXI	GAANNNNTTC	1 cut(s)	1107
MseI	TTAA	5 cut(s)	197, 681, 768, 884, 1020
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	6 cut(s)	309, 382, 525, 625, 732, 1039
Mva1269I	GAATGC	1 cut(s)	738
MvaI	CCWGG	6 cut(s)	309, 382, 525, 625, 732, 1039
MwoI	GCNNNNNNNGC	1 cut(s)	199
NdeII	GATC	3 cut(s)	219, 718, 859
NlaIV	GGNNCC	2 cut(s)	529, 622
NmuCI	GTSAC	1 cut(s)	793
PctI	GAATGC	1 cut(s)	738
PdmI	GAANNNNTTC	1 cut(s)	1107
PfeI	GAWTC	2 cut(s)	899, 1076
PinAI	ACCGGT	1 cut(s)	409
PleI	GAGTC	1 cut(s)	953
PpsI	GAGTC	1 cut(s)	953
Ppu21I	YACGTR	1 cut(s)	673
Psp6I	CCWGG	6 cut(s)	307, 380, 523, 623, 730, 1037
PspEI	GGTNACC	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	484
PspGI	CCWGG	6 cut(s)	307, 380, 523, 623, 730, 1037
PspN4I	GGNNCC	2 cut(s)	529, 622
PspPI	GGNCC	1 cut(s)	521
PsrI	GAACNNNNNNTAC	2 cut(s)	328, 360
SaqAI	TTAA	5 cut(s)	197, 681, 768, 884, 1020
Sau3AI	GATC	3 cut(s)	219, 718, 859
Sau96I	GGNCC	1 cut(s)	521
SchI	GAGTC	1 cut(s)	953
ScrFI	CCNGG	6 cut(s)	309, 382, 525, 625, 732, 1039
SetI	ASST	9 cut(s)	133, 481, 626, 640, 675, 829, 970, 1040, 1124
SfaNI	GCATC	1 cut(s)	880
SfcI	CTRYAG	3 cut(s)	963, 999, 1117
Sse9I	AATT	7 cut(s)	161, 188, 257, 459, 813, 864, 983
SsiI	CCGC	2 cut(s)	202, 447
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	2 cut(s)	147, 500
StyD4I	CCNGG	6 cut(s)	307, 380, 523, 623, 730, 1037
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	2 cut(s)	133, 675
TaqI	TCGA	1 cut(s)	414
TasI	AATT	7 cut(s)	161, 188, 257, 459, 813, 864, 983
TfiI	GAWTC	2 cut(s)	899, 1076
Tru1I	TTAA	5 cut(s)	197, 681, 768, 884, 1020
Tru9I	TTAA	5 cut(s)	197, 681, 768, 884, 1020
TscAI	CASTG	6 cut(s)	538, 599, 622, 753, 802, 928
TseFI	GTSAC	1 cut(s)	793
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	5 cut(s)	315, 597, 912, 982, 996
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	6 cut(s)	538, 599, 622, 753, 802, 928
XapI	RAATTY	2 cut(s)	459, 983
XbaI	TCTAGA	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	1107
XspI	CTAG	2 cut(s)	147, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.