Rorug05G0166000

F-box family protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002820
Physical Location & Seq
Forward (+)
15372567 .. 15372999
433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0166000.1

Sequence Viewer

Length: 321 bp
ATGCCTAGGTGGTTCGCAAAGCGTTTCTTACATCCTGATATAGTTTATCAATATAGTCGCATTCTTCTACAGGATGAGGACCTTGGAGTTGACAATTTCAATCCTCAACGGTATGTGTCCATTGTTCGAAAGGAAGGGCTTGAAATATCACAACCGGCACTTGATTTTTCCAAGACAGAGGTGAACTATATGGAGAAACTTTCAAAAGAGGAGGGGATTCAGAAGAAACTCAGCAAGGATATTTTGCAATATAAAGCTCATATAATCAAGATATTTGCGGAACATAGGTACAATTGGATCTCTGCAGATTTAGAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

106

Amino Acids

12.72

Weight (kDa)

6.83

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 4 - 74 2.9e-27 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 278
AclWI GGATC 1 cut(s) 305
AfaI GTAC 1 cut(s) 290
AgsI TTSAA 3 cut(s) 100, 143, 204
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
AlwI GGATC 1 cut(s) 305
AspA2I CCTAGG 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 193
AsuII TTCGAA 1 cut(s) 127
AvaII GGWCC 1 cut(s) 79
AvrII CCTAGG 1 cut(s) 5
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 2 cut(s) 68, 303
BlnI CCTAGG 1 cut(s) 5
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
Bpu14I TTCGAA 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 5, 82
Bse118I RCCGGY 1 cut(s) 154
BseDI CCNNGG 2 cut(s) 5, 82
BseGI GGATG 2 cut(s) 31, 79
BseMII CTCAG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 224
BsiSI CCGG 1 cut(s) 155
BsmI GAATGC 1 cut(s) 60
Bsp119I TTCGAA 1 cut(s) 127
Bsp143I GATC 1 cut(s) 297
BspACI CCGC 1 cut(s) 278
BspCNI CTCAG 1 cut(s) 243
BspMAI CTGCAG 1 cut(s) 307
BspPI GGATC 1 cut(s) 305
BspT104I TTCGAA 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 2 cut(s) 5, 82
BssMI GATC 1 cut(s) 297
BssT1I CCWWGG 2 cut(s) 5, 82
Bst4CI ACNGT 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 230
BstF5I GGATG 2 cut(s) 31, 79
BstKTI GATC 1 cut(s) 300
BstMBI GATC 1 cut(s) 297
BstSFI CTRYAG 2 cut(s) 68, 303
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BtsCI GGATG 2 cut(s) 31, 79
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 289
CviJI RGCY 2 cut(s) 139, 257
CviKI_1 RGCY 2 cut(s) 139, 257
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 230
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
Eco130I CCWWGG 2 cut(s) 5, 82
Eco47I GGWCC 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 79
EcoT14I CCWWGG 2 cut(s) 5, 82
ErhI CCWWGG 2 cut(s) 5, 82
FaiI YATR 9 cut(s) 41, 54, 114, 189, 191, 252, 261, 263, 285
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FokI GGATG 2 cut(s) 18, 86
FspBI CTAG 1 cut(s) 6
HapII CCGG 1 cut(s) 155
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 217
HpaII CCGG 1 cut(s) 155
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 2 cut(s) 91, 184
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 2 cut(s) 35, 268
Hpy8I GTNNAC 2 cut(s) 91, 184
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 247, 305
HpyF3I CTNAG 1 cut(s) 230
Kzo9I GATC 1 cut(s) 297
LpnPI CCDG 3 cut(s) 48, 56, 168
MaeI CTAG 1 cut(s) 6
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 2 cut(s) 56, 235
MfeI CAATTG 1 cut(s) 292
MflI RGATCY 1 cut(s) 297
MluCI AATT 2 cut(s) 94, 292
MnlI CCTC 5 cut(s) 70, 114, 172, 202, 205
MspI CCGG 1 cut(s) 155
MunI CAATTG 1 cut(s) 292
Mva1269I GAATGC 1 cut(s) 60
NdeII GATC 1 cut(s) 297
NspV TTCGAA 1 cut(s) 127
PctI GAATGC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 217
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
PspPI GGNCC 1 cut(s) 79
PspPPI RGGWCCY 1 cut(s) 79
PstI CTGCAG 1 cut(s) 307
PsuI RGATCY 1 cut(s) 297
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 79
SetI ASST 5 cut(s) 11, 84, 183, 259, 290
SfcI CTRYAG 2 cut(s) 68, 303
SfuI TTCGAA 1 cut(s) 127
SinI GGWCC 1 cut(s) 79
Sse9I AATT 2 cut(s) 94, 292
SsiI CCGC 1 cut(s) 278
SspMI CTAG 1 cut(s) 6
StyI CCWWGG 2 cut(s) 5, 82
TaaI ACNGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 127
TasI AATT 2 cut(s) 94, 292
TfiI GAWTC 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 79
XmaJI CCTAGG 1 cut(s) 5
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.