Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Forward (+)

14936056 .. 14937489

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21861.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAAATGGTTAATGCTGTCAGTAAATGTTTCCGAAGGAAGAATGTTGAGTGGTTGGATCTGGAATCTAATGGTGTGGTCGATAATATACTTTCAGGGCTTCCTGTCAAGTGCCTTCTAAATGTTAAGGCTGTATCTAAATTCTTGCATGGTTTGATTCATAGTCAAGCCTTCATTGGATTGCATTTAAGTCGGTCAAGAGAAAATGCCAAGTATATATTTTTCCCTTTTATGCCAATTAACAGAAACATATATTTCGTTGATGCTGATGCGGGAGTCACTGAGACAATCAGTCTTCCTACTGATGAGCGTCTATCACCTCTTAGCATGGTTTGTTCCTATAATGAATGTAGCCCATCGGAAGAGGACCTAGGCATTGGTGTTGCCTTTGGGCCAGATATCTGTGAGTATAAAGTATTTCGGTTTTTCTGTTCCAAATCCAATTCTGAAATAGTCCTTCCTGACCCAGAGGATGTGCTATCTTGGAGTTTGCATCCCGAAACTAGACCTGAAACAGTACTCCCTCCGGAGTGTGAGATATATTCATCCATAACAGGAGCCTGGCGTTGTATAGGTCATGTTCCGCATCGTCCTATGGGTGCACATCACGTATTTGTTAACGGAAAAGTTTATTGGTTTATTCCCTCAGAAGAAAAACATCATGTCCCTGGTTCCATTCTTTCAGTTGATATGTTGGAACATTTTGAAGTTATTGGGCTTCCAGAGCCACTCACAGAAATCTCCTACTTAATTGATTTTGAAGGTTGCTTATCAGTAGTCGCGGTTTCTAAAAAAGATGAGCCTGTGGTTATTTGGATTTTAAAGAGTGAAAATGAATCTGTTTGGGAGAAGAAATGCAGTGCTTCTATTCCTTACAGAGGAATGATGAAGGTAGTGGACACTTTGCTGGGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

306

Amino Acids

34.36

Weight (kDa)

5.4

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	172 - 288	3.6e-09	F-box associated beta propeller domain
FBA_3	PF08268	177 - 295	1.1e-09	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	782
AccIII	TCCGGA	1 cut(s)	526
AciI	CCGC	3 cut(s)	272, 584, 782
AclWI	GGATC	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	140
AfaI	GTAC	1 cut(s)	519
AfiI	CCNNNNNNNGG	1 cut(s)	878
AgsI	TTSAA	2 cut(s)	707, 761
AhdI	GACNNNNNGTC	1 cut(s)	291
AjnI	CCWGG	2 cut(s)	560, 667
AjuI	GAANNNNNNNTTGG	2 cut(s)	616, 648
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	1 cut(s)	278
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	66
Aor13HI	TCCGGA	1 cut(s)	526
AoxI	GGCC	1 cut(s)	392
ApaLI	GTGCAC	1 cut(s)	600
ApoI	RAATTY	1 cut(s)	140
AspA2I	CCTAGG	1 cut(s)	370
AspS9I	GGNCC	2 cut(s)	367, 392
AsuHPI	GGTGA	1 cut(s)	309
AvaII	GGWCC	1 cut(s)	367
AvrII	CCTAGG	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	604
BbsI	GAAGAC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	604
BccI	CCATC	1 cut(s)	364
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	2 cut(s)	562, 669
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	2 cut(s)	371, 504
BlnI	CCTAGG	1 cut(s)	370
BmcAI	AGTACT	1 cut(s)	519
Bme1390I	CCNGG	2 cut(s)	562, 669
Bme18I	GGWCC	1 cut(s)	367
BmeRI	GACNNNNNGTC	1 cut(s)	291
BmgT120I	GGNCC	2 cut(s)	367, 392
BmiI	GGNNCC	2 cut(s)	559, 673
BmrFI	CCNGG	2 cut(s)	562, 669
BmsI	GCATC	4 cut(s)	253, 259, 502, 595
BpiI	GAAGAC	1 cut(s)	287
BsaAI	YACGTR	1 cut(s)	610
BsaJI	CCNNGG	2 cut(s)	370, 667
BsaWI	WCCGGW	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	1 cut(s)	878
BseAI	TCCGGA	1 cut(s)	526
BseBI	CCWGG	2 cut(s)	562, 669
BseDI	CCNNGG	2 cut(s)	370, 667
BseGI	GGATG	3 cut(s)	478, 493, 545
BseLI	CCNNNNNNNGG	1 cut(s)	878
BseMII	CTCAG	2 cut(s)	273, 660
BseSI	GKGCMC	1 cut(s)	604
BseYI	CCCAGC	1 cut(s)	907
Bsh1236I	CGCG	1 cut(s)	782
BshFI	GGCC	1 cut(s)	394
BsiHKAI	GWGCWC	1 cut(s)	604
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	1 cut(s)	878
BsmAI	GTCTC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	650
BsnI	GGCC	1 cut(s)	394
Bsp1286I	GDGCHC	1 cut(s)	604
Bsp13I	TCCGGA	1 cut(s)	526
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	3 cut(s)	272, 584, 782
BspANI	GGCC	1 cut(s)	394
BspCNI	CTCAG	2 cut(s)	274, 659
BspEI	TCCGGA	1 cut(s)	526
BspFNI	CGCG	1 cut(s)	782
BspLI	GGNNCC	2 cut(s)	559, 673
BspPI	GGATC	1 cut(s)	66
BssECI	CCNNGG	2 cut(s)	370, 667
BssMI	GATC	1 cut(s)	58
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	2 cut(s)	562, 669
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	1 cut(s)	357
BstBAI	YACGTR	1 cut(s)	610
BstDEI	CTNAG	3 cut(s)	282, 323, 646
BstENI	CCTNNNNNAGG	1 cut(s)	876
BstF5I	GGATG	3 cut(s)	478, 493, 545
BstFNI	CGCG	1 cut(s)	782
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	724
BstNI	CCWGG	2 cut(s)	562, 669
BstSCI	CCNGG	2 cut(s)	560, 667
BstSLI	GKGCMC	1 cut(s)	604
BstUI	CGCG	1 cut(s)	782
BstV2I	GAAGAC	1 cut(s)	287
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	394
BtsCI	GGATG	3 cut(s)	478, 493, 545
BtsI	GCAGTG	1 cut(s)	865
BtsIMutI	CAGTG	2 cut(s)	279, 865
Cfr13I	GGNCC	2 cut(s)	367, 392
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	518
CviAII	CATG	4 cut(s)	149, 328, 578, 662
CviJI	RGCY	9 cut(s)	100, 131, 170, 354, 394, 560, 718, 727, 802
CviKI_1	RGCY	9 cut(s)	100, 131, 170, 354, 394, 560, 718, 727, 802
CviQI	GTAC	1 cut(s)	518
DdeI	CTNAG	3 cut(s)	282, 323, 646
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
DraI	TTTAAA	1 cut(s)	822
DriI	GACNNNNNGTC	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	357
Eam1105I	GACNNNNNGTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	370
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	367
EcoNI	CCTNNNNNAGG	1 cut(s)	876
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRII	CCWGG	2 cut(s)	560, 667
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	4 cut(s)	152, 331, 581, 665
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	4 cut(s)	148, 327, 577, 661
FauI	CCCGC	1 cut(s)	265
FokI	GGATG	3 cut(s)	480, 485, 532
FspBI	CTAG	2 cut(s)	371, 504
GsaI	CCCAGC	1 cut(s)	911
HaeIII	GGCC	1 cut(s)	394
HapII	CCGG	1 cut(s)	527
HgaI	GACGC	1 cut(s)	299
Hin1II	CATG	4 cut(s)	152, 331, 581, 665
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	4 cut(s)	65, 157, 276, 836
HpaI	GTTAAC	1 cut(s)	619
HpaII	CCGG	1 cut(s)	527
HphI	GGTGA	1 cut(s)	309
Hpy166II	GTNNAC	3 cut(s)	602, 619, 898
Hpy188I	TCNGA	4 cut(s)	35, 361, 448, 649
Hpy188III	TCNNGA	6 cut(s)	62, 198, 461, 497, 527, 722
Hpy8I	GTNNAC	3 cut(s)	602, 619, 898
HpyAV	CCTTC	6 cut(s)	30, 125, 181, 467, 755, 883
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	5 cut(s)	148, 184, 493, 602, 858
HpyF10VI	GCNNNNNNNGC	1 cut(s)	724
HpyF3I	CTNAG	3 cut(s)	282, 323, 646
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	4 cut(s)	152, 331, 581, 665
Kpn2I	TCCGGA	1 cut(s)	526
KspAI	GTTAAC	1 cut(s)	619
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	557
LweI	GCATC	4 cut(s)	253, 259, 502, 595
MaeI	CTAG	2 cut(s)	371, 504
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	5 cut(s)	52, 287, 374, 662, 862
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	604
MluCI	AATT	4 cut(s)	140, 237, 442, 750
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	2 cut(s)	36, 675
MnlI	CCTC	7 cut(s)	330, 358, 463, 534, 655, 872, 906
MroI	TCCGGA	1 cut(s)	526
MseI	TTAA	7 cut(s)	12, 126, 188, 240, 618, 749, 821
MspI	CCGG	1 cut(s)	527
MspR9I	CCNGG	2 cut(s)	562, 669
MvaI	CCWGG	2 cut(s)	562, 669
MvnI	CGCG	1 cut(s)	782
MwoI	GCNNNNNNNGC	1 cut(s)	724
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	4 cut(s)	152, 331, 581, 665
NlaIV	GGNNCC	2 cut(s)	559, 673
NmuCI	GTSAC	1 cut(s)	277
PfeI	GAWTC	3 cut(s)	65, 157, 836
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	610
PpuMI	RGGWCCY	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	560, 667
PspFI	CCCAGC	1 cut(s)	907
PspGI	CCWGG	2 cut(s)	560, 667
PspN4I	GGNNCC	2 cut(s)	559, 673
PspPI	GGNCC	2 cut(s)	367, 392
PspPPI	RGGWCCY	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	1 cut(s)	519
RsaNI	GTAC	1 cut(s)	518
SaqAI	TTAA	7 cut(s)	12, 126, 188, 240, 618, 749, 821
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	2 cut(s)	367, 392
ScaI	AGTACT	1 cut(s)	519
SchI	GAGTC	1 cut(s)	285
ScrFI	CCNGG	2 cut(s)	562, 669
SduI	GDGCHC	1 cut(s)	604
SetI	ASST	8 cut(s)	322, 372, 511, 577, 612, 766, 894, 917
SfaNI	GCATC	4 cut(s)	253, 259, 502, 595
SinI	GGWCC	1 cut(s)	367
Sse9I	AATT	4 cut(s)	140, 237, 442, 750
SsiI	CCGC	3 cut(s)	272, 584, 782
SspMI	CTAG	2 cut(s)	371, 504
StyD4I	CCNGG	2 cut(s)	560, 667
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	1 cut(s)	81
TaqII	GACCGA	1 cut(s)	183
TasI	AATT	4 cut(s)	140, 237, 442, 750
TatI	WGTACW	1 cut(s)	517
TfiI	GAWTC	3 cut(s)	65, 157, 836
Tru1I	TTAA	7 cut(s)	12, 126, 188, 240, 618, 749, 821
Tru9I	TTAA	7 cut(s)	12, 126, 188, 240, 618, 749, 821
TscAI	CASTG	2 cut(s)	286, 865
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	6 cut(s)	149, 163, 360, 534, 849, 902
TspGWI	ACGGA	1 cut(s)	636
TspRI	CASTG	2 cut(s)	286, 865
VneI	GTGCAC	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	367
XagI	CCTNNNNNAGG	1 cut(s)	876
XapI	RAATTY	1 cut(s)	140
XmaJI	CCTAGG	1 cut(s)	370
XspI	CTAG	2 cut(s)	371, 504
ZrmI	AGTACT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.