Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006558.1

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Forward (+)

105728 .. 107202

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006558.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

atggaaatggtgaattctgttggtaattgtatccaaaggaagaatgttgagtggttggatctgcaatctttcgaaggtgtgatcgataatgtactttcatcgctccctgtcaagtgccttctaaatgttaaggctgtttctaaattcttgcgtgatttgattcatagtcaagctttcattagattgcatttaagtcggtcaagagaaaatgccttgtatatatttttcccttttatgccaattaacagaaacatatacatcattgatgctgatgcggtagtcactgaaacagtcactcttcctactgatgagaatctatcaactcttagtatggtttgttcctataatggtttgatttgtctcaccaattttcccgtgactctttactcatataattctcaaggagtggcagtggcagacttggaaatcctgatctgcaatcccgccactcatgaagttggtttacttcctaaatgtagcccatcggaagaggacctaggcattggtgttgcctttggcccagagatcagtgagtataaagtatttcggtttttccgttccaaatccaattctgaaatagtcctccctgacccaaaggttgtgccatattggttttttcctcccacatccagacctgaaagagtcctccctccagagtgtgagatatattcatccagaactggaacctggagttgcgtaggtcctgttcagcatcgtcctatgggtgcacatcacgtatttgttaatggaaaagtttattggtttattccctcagaagaaaattatgatatccctggatccattctttcagttgatatggaggagcattttgaagttgtcgggcttccagatacactcacagaactctccttcttaattgattttgaaggctgcttatcagtagtcgcagtttttgataaagttgagcctgtggttatttggattttaaagaatgaaaatgaatatgtttgggagaagaaatgcagtgctggtattccctacaaaggaatgatggaggaacttcactctgtagctgccagagaaagtgacatttttttcataactgcacacgattatattatcttagacacagatgacagttcctgggaacttgttgagtttgaagagtttgaacctaatgctcacgctgtttttccatacacagaaagcctcctcccttgtagtggacggtttgcaggggaggtgaacaatcaaagagcagcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

408

Amino Acids

46.09

Weight (kDa)

4.68

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	275, 444
AclWI	GGATC	3 cut(s)	66, 792, 805
AcsI	RAATTY	2 cut(s)	13, 143
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	2 cut(s)	1004, 1184
AgsI	TTSAA	4 cut(s)	833, 887, 1124, 1133
AjnI	CCWGG	3 cut(s)	686, 793, 1103
AjuI	GAANNNNNNNTTGG	2 cut(s)	742, 774
AluBI	AGCT	2 cut(s)	173, 1034
AluI	AGCT	2 cut(s)	173, 1034
Alw21I	GWGCWC	1 cut(s)	730
Alw26I	GTCTC	1 cut(s)	365
Alw44I	GTGCAC	1 cut(s)	726
AlwI	GGATC	3 cut(s)	66, 792, 805
AlwNI	CAGNNNCTG	1 cut(s)	1104
AoxI	GGCC	1 cut(s)	517
ApaLI	GTGCAC	1 cut(s)	726
ApeKI	GCWGC	3 cut(s)	891, 1034, 1220
ApoI	RAATTY	2 cut(s)	13, 143
AspA2I	CCTAGG	1 cut(s)	496
AspS9I	GGNCC	3 cut(s)	493, 518, 701
AsuHPI	GGTGA	3 cut(s)	22, 355, 1216
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	2 cut(s)	493, 701
AvrII	CCTAGG	1 cut(s)	496
BaeGI	GKGCMC	1 cut(s)	730
BamHI	GGATCC	1 cut(s)	797
BarI	GAAGNNNNNNTAC	2 cut(s)	447, 479
Bbv12I	GWGCWC	1 cut(s)	730
BbvI	GCAGC	2 cut(s)	878, 1021
BccI	CCATC	2 cut(s)	490, 1006
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	3 cut(s)	688, 795, 1105
BciVI	GTATCC	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	1 cut(s)	497
BfmI	CTRYAG	1 cut(s)	1029
BfuI	GTATCC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	892, 1035, 1221
BlnI	CCTAGG	1 cut(s)	496
BlsI	GCNGC	3 cut(s)	893, 1036, 1222
Bme1390I	CCNGG	3 cut(s)	688, 795, 1105
Bme18I	GGWCC	2 cut(s)	493, 701
BmgT120I	GGNCC	3 cut(s)	493, 518, 701
BmiI	GGNNCC	2 cut(s)	685, 799
BmrFI	CCNGG	3 cut(s)	688, 795, 1105
BmsI	GCATC	3 cut(s)	256, 262, 721
BpmI	CTGGAG	2 cut(s)	636, 709
Bpu14I	TTCGAA	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	384
Bsa29I	ATCGAT	1 cut(s)	84
BsaAI	YACGTR	1 cut(s)	736
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	3 cut(s)	496, 793, 1104
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	1004, 1184
Bse1I	ACTGG	1 cut(s)	685
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	3 cut(s)	688, 795, 1105
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	3 cut(s)	496, 793, 1104
BseGI	GGATG	2 cut(s)	626, 671
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	1004, 1184
BseMII	CTCAG	1 cut(s)	786
BseNI	ACTGG	1 cut(s)	685
BseRI	GAGGAG	2 cut(s)	836, 1163
BseSI	GKGCMC	1 cut(s)	730
BseXI	GCAGC	2 cut(s)	878, 1021
BsgI	GTGCAG	1 cut(s)	1050
BshFI	GGCC	1 cut(s)	519
BshVI	ATCGAT	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	730
BslI	CCNNNNNNNGG	2 cut(s)	1004, 1184
BsmAI	GTCTC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	519
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	730
Bsp143I	GATC	5 cut(s)	58, 81, 432, 525, 797
BspACI	CCGC	2 cut(s)	275, 444
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	1 cut(s)	785
BspDI	ATCGAT	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	685, 799
BspPI	GGATC	3 cut(s)	66, 792, 805
BspT104I	TTCGAA	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	685
BssECI	CCNNGG	3 cut(s)	496, 793, 1104
BssMI	GATC	5 cut(s)	58, 81, 432, 525, 797
BssT1I	CCWWGG	1 cut(s)	496
Bst2UI	CCWGG	3 cut(s)	688, 795, 1105
Bst4CI	ACNGT	3 cut(s)	292, 1100, 1191
Bst6I	CTCTTC	3 cut(s)	303, 483, 1119
BstBAI	YACGTR	1 cut(s)	736
BstBI	TTCGAA	1 cut(s)	72
BstDEI	CTNAG	3 cut(s)	326, 772, 1084
BstF5I	GGATG	2 cut(s)	626, 671
BstKTI	GATC	5 cut(s)	61, 84, 435, 528, 800
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	5 cut(s)	58, 81, 432, 525, 797
BstNI	CCWGG	3 cut(s)	688, 795, 1105
BstSCI	CCNGG	3 cut(s)	686, 793, 1103
BstSFI	CTRYAG	1 cut(s)	1029
BstSLI	GKGCMC	1 cut(s)	730
BstV1I	GCAGC	2 cut(s)	878, 1021
BstX2I	RGATCY	2 cut(s)	58, 797
BstYI	RGATCY	2 cut(s)	58, 797
Bsu15I	ATCGAT	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	519
BsuTUI	ATCGAT	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	626, 671
BtsI	GCAGTG	2 cut(s)	417, 991
BtsIMutI	CAGTG	4 cut(s)	282, 417, 535, 991
CaiI	CAGNNNCTG	1 cut(s)	1104
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	3 cut(s)	493, 518, 701
ClaI	ATCGAT	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	1 cut(s)	452
CviJI	RGCY	9 cut(s)	134, 173, 480, 519, 844, 891, 928, 1034, 1170
CviKI_1	RGCY	9 cut(s)	134, 173, 480, 519, 844, 891, 928, 1034, 1170
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	3 cut(s)	326, 772, 1084
DpnI	GATC	5 cut(s)	60, 83, 434, 527, 799
DpnII	GATC	5 cut(s)	58, 81, 432, 525, 797
DraI	TTTAAA	1 cut(s)	948
Eam1104I	CTCTTC	3 cut(s)	303, 483, 1119
EarI	CTCTTC	3 cut(s)	303, 483, 1119
Eco130I	CCWWGG	1 cut(s)	496
Eco32I	GATATC	1 cut(s)	790
Eco47I	GGWCC	2 cut(s)	493, 701
EcoO109I	RGGNCCY	2 cut(s)	493, 701
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	3 cut(s)	686, 793, 1103
EcoRV	GATATC	1 cut(s)	790
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	1 cut(s)	455
FatI	CATG	1 cut(s)	451
FauI	CCCGC	1 cut(s)	451
Fnu4HI	GCNGC	3 cut(s)	892, 1035, 1221
FokI	GGATG	2 cut(s)	613, 658
Fsp4HI	GCNGC	3 cut(s)	892, 1035, 1221
FspBI	CTAG	1 cut(s)	497
GluI	GCNGC	3 cut(s)	892, 1035, 1221
GsuI	CTGGAG	2 cut(s)	636, 709
HaeIII	GGCC	1 cut(s)	519
Hin1II	CATG	1 cut(s)	455
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	4 cut(s)	160, 313, 379, 642
HphI	GGTGA	3 cut(s)	22, 355, 1216
Hpy166II	GTNNAC	4 cut(s)	464, 728, 1187, 1207
Hpy188I	TCNGA	3 cut(s)	487, 574, 775
Hpy188III	TCNNGA	7 cut(s)	201, 430, 452, 630, 653, 675, 848
Hpy8I	GTNNAC	4 cut(s)	464, 728, 1187, 1207
HpyAV	CCTTC	4 cut(s)	68, 128, 880, 881
HpyCH4III	ACNGT	3 cut(s)	292, 1100, 1191
HpyCH4IV	ACGT	1 cut(s)	735
HpyCH4V	TGCA	7 cut(s)	64, 187, 438, 728, 984, 1067, 1196
HpyF3I	CTNAG	3 cut(s)	326, 772, 1084
HpySE526I	ACGT	1 cut(s)	735
Hsp92II	CATG	1 cut(s)	455
Kzo9I	GATC	5 cut(s)	58, 81, 432, 525, 797
LmnI	GCTCC	2 cut(s)	108, 823
Lsp1109I	GCAGC	2 cut(s)	878, 1021
LweI	GCATC	3 cut(s)	256, 262, 721
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	1 cut(s)	735
MaeIII	GTNAC	4 cut(s)	280, 292, 376, 1046
MalI	GATC	5 cut(s)	60, 83, 434, 527, 799
MboI	GATC	5 cut(s)	58, 81, 432, 525, 797
MboII	GAAGA	6 cut(s)	52, 290, 500, 788, 988, 1136
MflI	RGATCY	2 cut(s)	58, 797
MhlI	GDGCHC	1 cut(s)	730
MluCI	AATT	9 cut(s)	13, 25, 143, 240, 367, 394, 568, 781, 876
MlyI	GAGTC	2 cut(s)	373, 651
MmeI	TCCRAC	1 cut(s)	36
MseI	TTAA	6 cut(s)	129, 191, 243, 744, 875, 947
MspR9I	CCNGG	3 cut(s)	688, 795, 1105
MvaI	CCWGG	3 cut(s)	688, 795, 1105
NdeII	GATC	5 cut(s)	58, 81, 432, 525, 797
NlaIII	CATG	1 cut(s)	455
NlaIV	GGNNCC	2 cut(s)	685, 799
NmuCI	GTSAC	4 cut(s)	280, 292, 376, 1046
NspV	TTCGAA	1 cut(s)	72
PagI	TCATGA	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	1 cut(s)	553
PfeI	GAWTC	2 cut(s)	160, 313
PkrI	GCNGC	3 cut(s)	893, 1036, 1222
PleI	GAGTC	2 cut(s)	373, 650
PpsI	GAGTC	2 cut(s)	373, 650
Ppu21I	YACGTR	1 cut(s)	736
PpuMI	RGGWCCY	2 cut(s)	493, 701
Psp5II	RGGWCCY	2 cut(s)	493, 701
Psp6I	CCWGG	3 cut(s)	686, 793, 1103
PspGI	CCWGG	3 cut(s)	686, 793, 1103
PspN4I	GGNNCC	2 cut(s)	685, 799
PspPI	GGNCC	3 cut(s)	493, 518, 701
PspPPI	RGGWCCY	2 cut(s)	493, 701
PsrI	GAACNNNNNNTAC	4 cut(s)	322, 354, 690, 722
PstNI	CAGNNNCTG	1 cut(s)	1104
PsuI	RGATCY	2 cut(s)	58, 797
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SaqAI	TTAA	6 cut(s)	129, 191, 243, 744, 875, 947
SatI	GCNGC	3 cut(s)	892, 1035, 1221
Sau3AI	GATC	5 cut(s)	58, 81, 432, 525, 797
Sau96I	GGNCC	3 cut(s)	493, 518, 701
SchI	GAGTC	2 cut(s)	373, 651
ScrFI	CCNGG	3 cut(s)	688, 795, 1105
SduI	GDGCHC	1 cut(s)	730
SfaNI	GCATC	3 cut(s)	256, 262, 721
SfcI	CTRYAG	1 cut(s)	1029
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	2 cut(s)	493, 701
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
Sse9I	AATT	9 cut(s)	13, 25, 143, 240, 367, 394, 568, 781, 876
SsiI	CCGC	2 cut(s)	275, 444
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	3 cut(s)	686, 793, 1103
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	3 cut(s)	292, 1100, 1191
TaiI	ACGT	1 cut(s)	738
TaqI	TCGA	2 cut(s)	72, 84
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	9 cut(s)	13, 25, 143, 240, 367, 394, 568, 781, 876
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	160, 313
Tru1I	TTAA	6 cut(s)	129, 191, 243, 744, 875, 947
Tru9I	TTAA	6 cut(s)	129, 191, 243, 744, 875, 947
TscAI	CASTG	4 cut(s)	289, 417, 535, 991
TseFI	GTSAC	4 cut(s)	280, 292, 376, 1046
TseI	GCWGC	3 cut(s)	891, 1034, 1220
Tsp45I	GTSAC	4 cut(s)	280, 292, 376, 1046
TspDTI	ATGAA	8 cut(s)	87, 152, 166, 468, 660, 969, 975, 1048
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	4 cut(s)	289, 417, 535, 991
VneI	GTGCAC	1 cut(s)	726
VpaK11BI	GGWCC	2 cut(s)	493, 701
XapI	RAATTY	2 cut(s)	13, 143
XmaJI	CCTAGG	1 cut(s)	496
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.