Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Reverse (-)

33026985 .. 33028327

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1226600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGTTTATTCTTGTACGGATGCTGTGAAAACTTTGCATTTGATTGATGGTAATGGGGTAATCACCGAAGTAATAACTCTTCCTCATTCTGAAAATCTGTCATCTCTTAGAATGATTTGTTCCTATAATGGGTTGACATGTTTCACCAACTATCCCTGGTATATTCACTCGAGAAGGATTCAAGCATCAGAGGAAGACCTGAAAATCTATATCTGCAATCCTGCTACTCATGAAACTAGGGCACTTCCAATAGGTAGCCCATCAGAAGCGGAACTAAGCATGGGGGTTGCCTTTGGCCCAGGAGCCAGTGAGTACAAAGTATTTCGCTTTTTCTCCTCCAACTTCGATGACAACGGCGAAGAACTCAACCCTGAGTGTGAGATCTTTTCATCAAGCACTGGAGCCTGCAAAGGCATATGTCGTGTTCAGCAAAGTCCTCTTGGTCCACATCACATATTTTGCAATGGAAAAGTTTACTGGTTTATGGCTGGAGAGGAAGACCGCGAAACCATTGAAGACGTTCTTTCAGTGGATATGGAGGGGAATTTTAAAACTATCGAACTTCCAGATGATACAACTGACTGGTCCTTCCTAATTGATCTTGATGGTTGCTTATCATTCGTTGTTGTAAACTGCAATGATCGTCTGTATATGAAGGTAAGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

223

Amino Acids

24.93

Weight (kDa)

4.62

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	30 - 213	1.2e-11	F-box associated beta propeller domain
FBA_1	PF07734	65 - 183	1.9e-08	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	504
AciI	CCGC	2 cut(s)	269, 502
AcsI	RAATTY	1 cut(s)	544
AfaI	GTAC	2 cut(s)	16, 314
AfiI	CCNNNNNNNGG	1 cut(s)	129
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	182, 515
AjnI	CCWGG	2 cut(s)	155, 298
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	1 cut(s)	295
ApoI	RAATTY	1 cut(s)	544
Asp700I	GAANNNNTTC	1 cut(s)	519
AspS9I	GGNCC	3 cut(s)	296, 443, 585
AsuHPI	GGTGA	2 cut(s)	55, 136
AvaI	CYCGRG	1 cut(s)	169
AvaII	GGWCC	2 cut(s)	443, 585
BaeGI	GKGCMC	1 cut(s)	244
BarI	GAAGNNNNNNTAC	2 cut(s)	63, 95
BbsI	GAAGAC	3 cut(s)	201, 504, 522
BccI	CCATC	3 cut(s)	41, 268, 599
BceAI	ACGGC	1 cut(s)	370
BciT130I	CCWGG	2 cut(s)	157, 300
BfaI	CTAG	1 cut(s)	237
BglII	AGATCT	1 cut(s)	381
Bme1390I	CCNGG	2 cut(s)	157, 300
Bme18I	GGWCC	2 cut(s)	443, 585
BmeT110I	CYCGRG	1 cut(s)	169
BmgT120I	GGNCC	3 cut(s)	296, 443, 585
BmiI	GGNNCC	2 cut(s)	304, 403
BmrFI	CCNGG	2 cut(s)	157, 300
BmsI	GCATC	2 cut(s)	10, 194
BpiI	GAAGAC	3 cut(s)	201, 504, 522
BpmI	CTGGAG	2 cut(s)	420, 510
BsaJI	CCNNGG	2 cut(s)	155, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	4 cut(s)	306, 403, 482, 587
Bse3DI	GCAATG	2 cut(s)	469, 643
BseBI	CCWGG	2 cut(s)	157, 300
BseDI	CCNNGG	2 cut(s)	155, 298
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMI	GCAATG	2 cut(s)	469, 643
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	4 cut(s)	306, 403, 482, 587
BseRI	GAGGAG	1 cut(s)	325
BseSI	GKGCMC	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	504
BshFI	GGCC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	129
BsnI	GGCC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	381, 598, 640
BspACI	CCGC	2 cut(s)	269, 502
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	364
BspFNI	CGCG	1 cut(s)	504
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	304, 403
BsrDI	GCAATG	2 cut(s)	469, 643
BsrI	ACTGG	4 cut(s)	306, 403, 482, 587
BssECI	CCNNGG	2 cut(s)	155, 298
BssMI	GATC	3 cut(s)	381, 598, 640
Bst2UI	CCWGG	2 cut(s)	157, 300
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	3 cut(s)	107, 275, 372
BstF5I	GGATG	1 cut(s)	25
BstFNI	CGCG	1 cut(s)	504
BstKTI	GATC	3 cut(s)	384, 601, 643
BstMBI	GATC	3 cut(s)	381, 598, 640
BstNI	CCWGG	2 cut(s)	157, 300
BstNSI	RCATGY	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	155, 298
BstSLI	GKGCMC	1 cut(s)	244
BstUI	CGCG	1 cut(s)	504
BstV2I	GAAGAC	3 cut(s)	201, 504, 522
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	3 cut(s)	313, 396, 534
Cac8I	GCNNGC	1 cut(s)	406
CciI	TCATGA	1 cut(s)	229
Cfr13I	GGNCC	3 cut(s)	296, 443, 585
Csp6I	GTAC	2 cut(s)	15, 313
CviAII	CATG	3 cut(s)	138, 230, 280
CviJI	RGCY	5 cut(s)	258, 297, 305, 404, 488
CviKI_1	RGCY	5 cut(s)	258, 297, 305, 404, 488
CviQI	GTAC	2 cut(s)	15, 313
DdeI	CTNAG	3 cut(s)	107, 275, 372
DpnI	GATC	3 cut(s)	383, 600, 642
DpnII	GATC	3 cut(s)	381, 598, 640
DraI	TTTAAA	1 cut(s)	550
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco47I	GGWCC	2 cut(s)	443, 585
Eco88I	CYCGRG	1 cut(s)	169
EcoRII	CCWGG	2 cut(s)	155, 298
FaeI	CATG	3 cut(s)	141, 233, 283
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FatI	CATG	3 cut(s)	137, 229, 279
FauNDI	CATATG	1 cut(s)	416
FokI	GGATG	1 cut(s)	32
FspBI	CTAG	1 cut(s)	237
GsuI	CTGGAG	2 cut(s)	420, 510
HaeIII	GGCC	1 cut(s)	297
Hin1II	CATG	3 cut(s)	141, 233, 283
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	178
HphI	GGTGA	2 cut(s)	55, 136
Hpy166II	GTNNAC	4 cut(s)	135, 446, 475, 631
Hpy188I	TCNGA	3 cut(s)	91, 190, 265
Hpy188III	TCNNGA	4 cut(s)	171, 230, 566, 602
Hpy8I	GTNNAC	4 cut(s)	135, 446, 475, 631
HpyAV	CCTTC	3 cut(s)	168, 598, 649
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	5 cut(s)	37, 216, 408, 462, 636
HpyF3I	CTNAG	3 cut(s)	107, 275, 372
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	3 cut(s)	141, 233, 283
Kzo9I	GATC	3 cut(s)	381, 598, 640
LmnI	GCTCC	2 cut(s)	302, 401
LweI	GCATC	2 cut(s)	10, 194
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	519
MalI	GATC	3 cut(s)	383, 600, 642
MboI	GATC	3 cut(s)	381, 598, 640
MboII	GAAGA	5 cut(s)	71, 206, 371, 509, 527
MflI	RGATCY	1 cut(s)	381
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	2 cut(s)	544, 594
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	6 cut(s)	93, 184, 346, 447, 487, 532
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	2 cut(s)	549, 667
MspR9I	CCNGG	2 cut(s)	157, 300
MvaI	CCWGG	2 cut(s)	157, 300
MvnI	CGCG	1 cut(s)	504
NdeI	CATATG	1 cut(s)	416
NdeII	GATC	3 cut(s)	381, 598, 640
NlaIII	CATG	3 cut(s)	141, 233, 283
NlaIV	GGNNCC	2 cut(s)	304, 403
NspI	RCATGY	1 cut(s)	141
PaeR7I	CTCGAG	1 cut(s)	169
PagI	TCATGA	1 cut(s)	229
PciI	ACATGT	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	1 cut(s)	178
PscI	ACATGT	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	155, 298
PspGI	CCWGG	2 cut(s)	155, 298
PspN4I	GGNNCC	2 cut(s)	304, 403
PspPI	GGNCC	3 cut(s)	296, 443, 585
PsuI	RGATCY	1 cut(s)	381
RsaI	GTAC	2 cut(s)	16, 314
RsaNI	GTAC	2 cut(s)	15, 313
SaqAI	TTAA	2 cut(s)	549, 667
Sau3AI	GATC	3 cut(s)	381, 598, 640
Sau96I	GGNCC	3 cut(s)	296, 443, 585
ScrFI	CCNGG	2 cut(s)	157, 300
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	4 cut(s)	201, 256, 522, 660
SfaNI	GCATC	2 cut(s)	10, 194
Sfr274I	CTCGAG	1 cut(s)	169
SinI	GGWCC	2 cut(s)	443, 585
SlaI	CTCGAG	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	2 cut(s)	544, 594
SsiI	CCGC	2 cut(s)	269, 502
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	155, 298
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	3 cut(s)	170, 345, 558
TasI	AATT	2 cut(s)	544, 594
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	2 cut(s)	549, 667
Tru9I	TTAA	2 cut(s)	549, 667
TscAI	CASTG	3 cut(s)	313, 403, 534
TspDTI	ATGAA	3 cut(s)	246, 378, 668
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	3 cut(s)	313, 403, 534
VpaK11BI	GGWCC	2 cut(s)	443, 585
XapI	RAATTY	1 cut(s)	544
XceI	RCATGY	1 cut(s)	141
XhoI	CTCGAG	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.