Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Reverse (-)

22477554 .. 22478171

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g19930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGATAGAGCTGTTGCACAACGTACCTCAAATGTTCTGCTCAGAAATCGCAGTGCTTGGTCTCATGTGGAATGTCTGGAAGAATTGTTCGGGGATATTCTGTCAAGGCTTCCTGTTCATTGCCTCTTAAGTTCCAAGTTTGTTTCTAGACATTGGCGTGGACAGATTCACAGAGCACAATTGGCTGAATTGCATTTTAGCCGATCAGCAGAAGTTGTGCTCTATATAGTTTATTCTTGTACGGATGCTGTGAAAACTTTGCATTTGATTGATGGTAATGGGGTAATCACCGAAGTAATAACTCTTCCTCATTCTGAAAATCTGTCATCTCTTAGAATGATTTGTTCCTATAATGGGTTGACATGTTTCACCAACTATCCCTGGTATATTCACTCGAGAAGGATTCAATGCAATCCTGCTACTCATGAAACTAGGGCACTTACAATAGGTAGCCCATCAGAAGCGGAACTAGGCATGGGGGTTGCCTTTGGCCCAGGAGCCAGTGAGTACAAAGTATTTCTCTTTTTCTCCACCAACTTCGATGACGACGACGAAGACGAAGAACTCAACCCTGAGTGTGAGATATTTTCATCAAGCACTGGAGCTGGAGAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

206

Amino Acids

22.96

Weight (kDa)

5.3

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	464
AfaI	GTAC	3 cut(s)	25, 241, 509
AfiI	CCNNNNNNNGG	1 cut(s)	354
AflII	CTTAAG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	362
AgsI	TTSAA	1 cut(s)	407
AjnI	CCWGG	2 cut(s)	380, 493
AloI	GAACNNNNNNTCC	2 cut(s)	71, 103
AluBI	AGCT	2 cut(s)	11, 605
AluI	AGCT	2 cut(s)	11, 605
Alw21I	GWGCWC	2 cut(s)	178, 222
Alw26I	GTCTC	1 cut(s)	66
Ama87I	CYCGRG	1 cut(s)	394
AoxI	GGCC	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	2 cut(s)	280, 361
AvaI	CYCGRG	1 cut(s)	394
BaeGI	GKGCMC	1 cut(s)	439
BarI	GAAGNNNNNNTAC	2 cut(s)	288, 320
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	2 cut(s)	178, 222
BccI	CCATC	2 cut(s)	266, 463
BciT130I	CCWGG	2 cut(s)	382, 495
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	3 cut(s)	147, 432, 470
BfrI	CTTAAG	1 cut(s)	127
Bme1390I	CCNGG	2 cut(s)	382, 495
BmeT110I	CYCGRG	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	2 cut(s)	382, 495
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	380, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse1I	ACTGG	2 cut(s)	501, 604
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	2 cut(s)	382, 495
BseDI	CCNNGG	2 cut(s)	380, 493
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	55, 564
BseNI	ACTGG	2 cut(s)	501, 604
BseSI	GKGCMC	1 cut(s)	439
BshFI	GGCC	1 cut(s)	492
BsiHKAI	GWGCWC	2 cut(s)	178, 222
BsiHKCI	CYCGRG	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	492
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	394
Bsp1286I	GDGCHC	3 cut(s)	178, 222, 439
Bsp143I	GATC	1 cut(s)	203
BspACI	CCGC	1 cut(s)	464
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	2 cut(s)	54, 565
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	499
BspTI	CTTAAG	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	2 cut(s)	501, 604
BssECI	CCNNGG	2 cut(s)	380, 493
BssMI	GATC	1 cut(s)	203
Bst2UI	CCWGG	2 cut(s)	382, 495
Bst6I	CTCTTC	1 cut(s)	309
BstAFI	CTTAAG	1 cut(s)	127
BstDEI	CTNAG	3 cut(s)	41, 332, 573
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	1 cut(s)	206
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 611
BstNI	CCWGG	2 cut(s)	382, 495
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	380, 493
BstSLI	GKGCMC	1 cut(s)	439
BstV2I	GAAGAC	1 cut(s)	561
BsuRI	GGCC	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	3 cut(s)	58, 508, 597
CciI	TCATGA	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	491
Csp6I	GTAC	3 cut(s)	24, 240, 508
CviAII	CATG	4 cut(s)	65, 363, 425, 475
CviJI	RGCY	8 cut(s)	11, 109, 185, 201, 453, 492, 500, 605
CviKI_1	RGCY	8 cut(s)	11, 109, 185, 201, 453, 492, 500, 605
CviQI	GTAC	3 cut(s)	24, 240, 508
DdeI	CTNAG	3 cut(s)	41, 332, 573
DpnI	GATC	1 cut(s)	205
DpnII	GATC	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	394
EcoRII	CCWGG	2 cut(s)	380, 493
FaeI	CATG	4 cut(s)	68, 366, 428, 478
FaiI	YATR	9 cut(s)	66, 225, 227, 351, 364, 387, 426, 476, 616
FatI	CATG	4 cut(s)	64, 362, 424, 474
FokI	GGATG	1 cut(s)	257
FspBI	CTAG	3 cut(s)	147, 432, 470
HaeIII	GGCC	1 cut(s)	492
Hin1II	CATG	4 cut(s)	68, 366, 428, 478
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	2 cut(s)	166, 403
HphI	GGTGA	2 cut(s)	280, 361
Hpy166II	GTNNAC	2 cut(s)	161, 360
Hpy188I	TCNGA	3 cut(s)	44, 316, 460
Hpy188III	TCNNGA	4 cut(s)	77, 147, 396, 425
Hpy8I	GTNNAC	2 cut(s)	161, 360
Hpy99I	CGWCG	2 cut(s)	551, 554
HpyAV	CCTTC	1 cut(s)	393
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	4 cut(s)	17, 193, 262, 411
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 611
HpyF3I	CTNAG	3 cut(s)	41, 332, 573
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	4 cut(s)	68, 366, 428, 478
Kzo9I	GATC	1 cut(s)	203
LmnI	GCTCC	2 cut(s)	497, 602
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	3 cut(s)	147, 432, 470
MaeII	ACGT	1 cut(s)	22
MalI	GATC	1 cut(s)	205
MboI	GATC	1 cut(s)	203
MboII	GAAGA	4 cut(s)	92, 296, 566, 572
MfeI	CAATTG	1 cut(s)	179
MhlI	GDGCHC	3 cut(s)	178, 222, 439
MluCI	AATT	3 cut(s)	83, 179, 188
MnlI	CCTC	4 cut(s)	37, 134, 318, 604
MseI	TTAA	1 cut(s)	128
MslI	CAYNNNNRTG	1 cut(s)	156
MspCI	CTTAAG	1 cut(s)	127
MspR9I	CCNGG	2 cut(s)	382, 495
MunI	CAATTG	1 cut(s)	179
MvaI	CCWGG	2 cut(s)	382, 495
MwoI	GCNNNNNNNGC	2 cut(s)	182, 611
NdeII	GATC	1 cut(s)	203
NlaIII	CATG	4 cut(s)	68, 366, 428, 478
NlaIV	GGNNCC	1 cut(s)	499
NspI	RCATGY	1 cut(s)	366
PaeR7I	CTCGAG	1 cut(s)	394
PagI	TCATGA	1 cut(s)	424
PciI	ACATGT	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	2 cut(s)	546, 555
PfeI	GAWTC	2 cut(s)	166, 403
PscI	ACATGT	1 cut(s)	362
Psp6I	CCWGG	2 cut(s)	380, 493
PspGI	CCWGG	2 cut(s)	380, 493
PspN4I	GGNNCC	1 cut(s)	499
PspPI	GGNCC	1 cut(s)	491
RsaI	GTAC	3 cut(s)	25, 241, 509
RsaNI	GTAC	3 cut(s)	24, 240, 508
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	128
Sau3AI	GATC	1 cut(s)	203
Sau96I	GGNCC	1 cut(s)	491
ScrFI	CCNGG	2 cut(s)	382, 495
SduI	GDGCHC	3 cut(s)	178, 222, 439
SetI	ASST	5 cut(s)	13, 25, 29, 451, 607
SfaNI	GCATC	1 cut(s)	235
Sfr274I	CTCGAG	1 cut(s)	394
SlaI	CTCGAG	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	2 cut(s)	127, 394
SmoI	CTYRAG	2 cut(s)	127, 394
Sse9I	AATT	3 cut(s)	83, 179, 188
SsiI	CCGC	1 cut(s)	464
SspMI	CTAG	3 cut(s)	147, 432, 470
StyD4I	CCNGG	2 cut(s)	380, 493
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	2 cut(s)	395, 540
TasI	AATT	3 cut(s)	83, 179, 188
TatI	WGTACW	1 cut(s)	507
TfiI	GAWTC	2 cut(s)	166, 403
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	3 cut(s)	58, 508, 604
TspDTI	ATGAA	3 cut(s)	107, 441, 579
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	3 cut(s)	58, 508, 604
Vha464I	CTTAAG	1 cut(s)	127
XbaI	TCTAGA	1 cut(s)	146
XceI	RCATGY	1 cut(s)	366
XhoI	CTCGAG	1 cut(s)	394
XspI	CTAG	3 cut(s)	147, 432, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.