Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021476.1

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Reverse (-)

376 .. 1658

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021476.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atgaagcaggatgaagtttttgttaatcttatccagaggaagagtgctggttggttcaatgtggaatctgctgaagatctgcttggcaatattctttcaaggcttccagttaagctccttctaactatcaaggtcgtttctaaactttggcatagattgatttgcagtccaaatttcactagactgcatttaagcaaatcaagagaaaagtccatctatatactttatccttttatggatgctaaaagaagtctgtatttcatggatgctgacggggtgatcaccggaacaatcagtcttactggtttaaaaaatataccatctctatgtatgattgcttcctacaatgggttgatatgtttcactaattatccttggtttcctcattcatttaagactcgagcagtagtgacaggcttggaaatccgaatttgcaatcctgcaactcgtgaagtttggctacttcctaatgggagccaaatgaaacaggagctaggaattggggttgcctttggcccgggaatcagtgagtatagggtacttcggtttttctgttccaaatccaaatctgatgtaattcaccctgagtgtgagatatttcaatcaagcaccggaacctggagaagcttaggttttgttcagcattgtcctatgggtgcacatcatgtatttgttcatggaaaagttttttggtttattccttcagaagaagatcataatatccctggatccattctttcagttggtttcgacgaagattttagaattatcagacttccagttgcggtcactgaacatgccttcttggttgatcttgaaggtcaattatcactgatcgttgtatttgatgatgatgacactatggttatatggattttgaaggatgaaaatgagtccatttgggaggagaaatgtcgtgatggtattccctatgaaactgtggagtgtcttgactctgtagctgcaagaaaaactgacatttttttcatcactgaagaacgctatttcatcttcagtatgataaaaatgtcctggaaagaaactcatttcaaagaactatttgaacaacattctcctgttgtttttacgtacacagaaagcctcctcccttgtcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

372

Amino Acids

42.77

Weight (kDa)

5.92

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	785
AclWI	GGATC	2 cut(s)	723, 736
AcsI	RAATTY	2 cut(s)	172, 429
AcuI	CTGAAG	4 cut(s)	93, 687, 997, 1014
AfaI	GTAC	2 cut(s)	540, 1091
AfiI	CCNNNNNNNGG	2 cut(s)	348, 618
AgsI	TTSAA	7 cut(s)	58, 99, 602, 818, 880, 1051, 1064
AjnI	CCWGG	3 cut(s)	617, 724, 1031
AjuI	GAANNNNNNNTTGG	4 cut(s)	66, 98, 673, 705
AluBI	AGCT	4 cut(s)	115, 493, 627, 962
AluI	AGCT	4 cut(s)	115, 493, 627, 962
Alw21I	GWGCWC	1 cut(s)	661
Alw44I	GTGCAC	1 cut(s)	657
AlwI	GGATC	2 cut(s)	723, 736
Ama87I	CYCGRG	2 cut(s)	399, 517
AoxI	GGCC	1 cut(s)	514
ApaLI	GTGCAC	1 cut(s)	657
ApeKI	GCWGC	1 cut(s)	962
ApoI	RAATTY	2 cut(s)	172, 429
AspS9I	GGNCC	1 cut(s)	515
AsuC2I	CCSGG	2 cut(s)	518, 519
AsuHPI	GGTGA	3 cut(s)	274, 289, 572
AvaI	CYCGRG	2 cut(s)	399, 517
BaeGI	GKGCMC	1 cut(s)	661
BaeI	ACNNNNGTAYC	2 cut(s)	530, 563
BamHI	GGATCC	1 cut(s)	728
BarI	GAAGNNNNNNTAC	4 cut(s)	322, 354, 444, 476
BauI	CACGAG	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	661
BbvI	GCAGC	1 cut(s)	949
BccI	CCATC	3 cut(s)	221, 328, 914
BciT130I	CCWGG	3 cut(s)	619, 726, 1033
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	2 cut(s)	518, 519
BfaI	CTAG	2 cut(s)	180, 494
BfmI	CTRYAG	1 cut(s)	957
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	1 cut(s)	963
BlsI	GCNGC	1 cut(s)	964
Bme1390I	CCNGG	5 cut(s)	518, 519, 619, 726, 1033
BmeT110I	CYCGRG	2 cut(s)	399, 517
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	3 cut(s)	476, 616, 730
BmrFI	CCNGG	5 cut(s)	518, 519, 619, 726, 1033
BmsI	GCATC	2 cut(s)	229, 256
BpmI	CTGGAG	1 cut(s)	640
Bpu10I	CCTNAGC	1 cut(s)	628
BpuMI	CCSGG	2 cut(s)	518, 519
BsaAI	YACGTR	1 cut(s)	1089
BsaJI	CCNNGG	3 cut(s)	374, 517, 724
BsaWI	WCCGGW	2 cut(s)	284, 611
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 618
Bse1I	ACTGG	3 cut(s)	107, 307, 779
BseBI	CCWGG	3 cut(s)	619, 726, 1033
BseDI	CCNNGG	3 cut(s)	374, 517, 724
BseGI	GGATG	4 cut(s)	16, 244, 271, 889
BseLI	CCNNNNNNNGG	2 cut(s)	348, 618
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	3 cut(s)	107, 307, 779
BseRI	GAGGAG	2 cut(s)	920, 1094
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	1 cut(s)	949
BshFI	GGCC	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	661
BsiHKCI	CYCGRG	2 cut(s)	399, 517
BsiSI	CCGG	3 cut(s)	285, 518, 612
BslI	CCNNNNNNNGG	2 cut(s)	348, 618
BsnI	GGCC	1 cut(s)	516
BsoBI	CYCGRG	2 cut(s)	399, 517
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp143I	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
BspACI	CCGC	1 cut(s)	785
BspANI	GGCC	1 cut(s)	516
BspCNI	CTCAG	1 cut(s)	577
BspLI	GGNNCC	3 cut(s)	476, 616, 730
BspPI	GGATC	2 cut(s)	723, 736
BsrI	ACTGG	3 cut(s)	107, 307, 779
BssECI	CCNNGG	3 cut(s)	374, 517, 724
BssMI	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	3 cut(s)	619, 726, 1033
Bst4CI	ACNGT	1 cut(s)	940
Bst6I	CTCTTC	1 cut(s)	35
BstBAI	YACGTR	1 cut(s)	1089
BstDEI	CTNAG	2 cut(s)	585, 628
BstF5I	GGATG	4 cut(s)	16, 244, 271, 889
BstKTI	GATC	6 cut(s)	79, 282, 715, 731, 814, 837
BstMBI	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
BstNI	CCWGG	3 cut(s)	619, 726, 1033
BstNSI	RCATGY	1 cut(s)	800
BstSCI	CCNGG	5 cut(s)	516, 517, 617, 724, 1031
BstSFI	CTRYAG	1 cut(s)	957
BstSLI	GKGCMC	1 cut(s)	661
BstSNI	TACGTA	1 cut(s)	1089
BstV1I	GCAGC	1 cut(s)	949
BstX2I	RGATCY	2 cut(s)	76, 728
BstYI	RGATCY	2 cut(s)	76, 728
BsuRI	GGCC	1 cut(s)	516
BtsCI	GGATG	4 cut(s)	16, 244, 271, 889
BtsIMutI	CAGTG	5 cut(s)	532, 789, 830, 990, 1114
Cfr13I	GGNCC	1 cut(s)	515
Cfr9I	CCCGGG	1 cut(s)	517
Csp6I	GTAC	2 cut(s)	539, 1090
CviAII	CATG	4 cut(s)	262, 665, 677, 797
CviQI	GTAC	2 cut(s)	539, 1090
DdeI	CTNAG	2 cut(s)	585, 628
DpnI	GATC	6 cut(s)	78, 281, 714, 730, 813, 836
DpnII	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
DraI	TTTAAA	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco105I	TACGTA	1 cut(s)	1089
Eco130I	CCWWGG	1 cut(s)	374
Eco57I	CTGAAG	4 cut(s)	93, 687, 997, 1014
Eco88I	CYCGRG	2 cut(s)	399, 517
EcoRII	CCWGG	3 cut(s)	617, 724, 1031
EcoT14I	CCWWGG	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	4 cut(s)	265, 668, 680, 800
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FatI	CATG	4 cut(s)	261, 664, 676, 796
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	963
FokI	GGATG	4 cut(s)	23, 251, 278, 896
Fsp4HI	GCNGC	1 cut(s)	963
FspBI	CTAG	2 cut(s)	180, 494
GluI	GCNGC	1 cut(s)	963
GsuI	CTGGAG	1 cut(s)	640
HaeIII	GGCC	1 cut(s)	516
HapII	CCGG	3 cut(s)	285, 518, 612
Hin1II	CATG	4 cut(s)	265, 668, 680, 800
HindIII	AAGCTT	1 cut(s)	625
HinfI	GANTC	5 cut(s)	65, 397, 522, 893, 953
HpaII	CCGG	3 cut(s)	285, 518, 612
HphI	GGTGA	3 cut(s)	274, 289, 572
Hpy166II	GTNNAC	2 cut(s)	659, 1092
Hpy188I	TCNGA	4 cut(s)	428, 571, 706, 773
Hpy188III	TCNNGA	6 cut(s)	34, 201, 449, 815, 917, 950
Hpy8I	GTNNAC	2 cut(s)	659, 1092
Hpy99I	CGWCG	1 cut(s)	755
HpyAV	CCTTC	5 cut(s)	128, 711, 811, 812, 874
HpyCH4III	ACNGT	1 cut(s)	940
HpyCH4IV	ACGT	1 cut(s)	1088
HpyCH4V	TGCA	6 cut(s)	165, 187, 435, 443, 659, 965
HpyF3I	CTNAG	2 cut(s)	585, 628
HpySE526I	ACGT	1 cut(s)	1088
Hsp92II	CATG	4 cut(s)	265, 668, 680, 800
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
LmnI	GCTCC	3 cut(s)	120, 474, 490
Lsp1109I	GCAGC	1 cut(s)	949
LweI	GCATC	2 cut(s)	229, 256
MaeI	CTAG	2 cut(s)	180, 494
MaeII	ACGT	1 cut(s)	1088
MaeIII	GTNAC	3 cut(s)	409, 787, 1112
MalI	GATC	6 cut(s)	78, 281, 714, 730, 813, 836
MboI	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
MboII	GAAGA	7 cut(s)	52, 86, 719, 722, 767, 1003, 1007
MflI	RGATCY	2 cut(s)	76, 728
MhlI	GDGCHC	1 cut(s)	661
MluCI	AATT	7 cut(s)	172, 367, 429, 498, 576, 765, 824
MlyI	GAGTC	3 cut(s)	391, 902, 947
MnlI	CCTC	5 cut(s)	30, 393, 898, 1112, 1115
MseI	TTAA	5 cut(s)	24, 111, 191, 308, 393
MslI	CAYNNNNRTG	1 cut(s)	325
MspI	CCGG	3 cut(s)	285, 518, 612
MspR9I	CCNGG	5 cut(s)	518, 519, 619, 726, 1033
MvaI	CCWGG	3 cut(s)	619, 726, 1033
NciI	CCSGG	2 cut(s)	518, 519
NdeII	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
NlaIII	CATG	4 cut(s)	265, 668, 680, 800
NlaIV	GGNNCC	3 cut(s)	476, 616, 730
NmuCI	GTSAC	3 cut(s)	409, 787, 1112
NspI	RCATGY	1 cut(s)	800
PaeR7I	CTCGAG	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	65, 522
PfoI	TCCNGGA	1 cut(s)	1031
PkrI	GCNGC	1 cut(s)	964
PleI	GAGTC	3 cut(s)	391, 901, 947
PpsI	GAGTC	3 cut(s)	391, 901, 947
Ppu21I	YACGTR	1 cut(s)	1089
Psp6I	CCWGG	3 cut(s)	617, 724, 1031
PspGI	CCWGG	3 cut(s)	617, 724, 1031
PspN4I	GGNNCC	3 cut(s)	476, 616, 730
PspPI	GGNCC	1 cut(s)	515
PspXI	VCTCGAGB	1 cut(s)	399
PsuI	RGATCY	2 cut(s)	76, 728
RsaI	GTAC	2 cut(s)	540, 1091
RsaNI	GTAC	2 cut(s)	539, 1090
RseI	CAYNNNNRTG	1 cut(s)	325
SaqAI	TTAA	5 cut(s)	24, 111, 191, 308, 393
SatI	GCNGC	1 cut(s)	963
Sau3AI	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
Sau96I	GGNCC	1 cut(s)	515
SchI	GAGTC	3 cut(s)	391, 902, 947
ScrFI	CCNGG	5 cut(s)	518, 519, 619, 726, 1033
SduI	GDGCHC	1 cut(s)	661
SetI	ASST	9 cut(s)	117, 135, 495, 620, 629, 634, 823, 964, 1091
SfaNI	GCATC	2 cut(s)	229, 256
SfcI	CTRYAG	1 cut(s)	957
Sfr274I	CTCGAG	1 cut(s)	399
SlaI	CTCGAG	1 cut(s)	399
SmaI	CCCGGG	1 cut(s)	519
SmiMI	CAYNNNNRTG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
SnaBI	TACGTA	1 cut(s)	1089
Sse9I	AATT	7 cut(s)	172, 367, 429, 498, 576, 765, 824
SsiI	CCGC	1 cut(s)	785
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	2 cut(s)	180, 494
StyD4I	CCNGG	5 cut(s)	516, 517, 617, 724, 1031
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	940
TaiI	ACGT	1 cut(s)	1091
TaqI	TCGA	2 cut(s)	400, 750
TasI	AATT	7 cut(s)	172, 367, 429, 498, 576, 765, 824
TfiI	GAWTC	2 cut(s)	65, 522
Tru1I	TTAA	5 cut(s)	24, 111, 191, 308, 393
Tru9I	TTAA	5 cut(s)	24, 111, 191, 308, 393
TscAI	CASTG	4 cut(s)	532, 796, 837, 997
TseFI	GTSAC	3 cut(s)	409, 787, 1112
TseI	GCWGC	1 cut(s)	962
Tsp45I	GTSAC	3 cut(s)	409, 787, 1112
TspMI	CCCGGG	1 cut(s)	517
TspRI	CASTG	4 cut(s)	532, 796, 837, 997
VneI	GTGCAC	1 cut(s)	657
XapI	RAATTY	2 cut(s)	172, 429
XceI	RCATGY	1 cut(s)	800
XhoI	CTCGAG	1 cut(s)	399
XmaI	CCCGGG	1 cut(s)	517
XspI	CTAG	2 cut(s)	180, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.