Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Reverse (-)

7198450 .. 7202717

Gene Structure 4268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGTCAAAACTCGTGCTCAGCGTATCAAGCGGATGAGTGTTGTAGATGCACTTTGCATCCGGTCTCAGATCTCGGTCAAATCTGCCCGGTATTGTAAGACAGTTAGTAAGCACCTTGCAAAGCTACAGTTAGCAGAATCTGGAAAGAATTCATCATTGGTAGTCTGTCCTAGTATGGGGAAAACAATGAAGTTGTATTCGATGGATGCAAAGAGATGTAAACTTTCCCTCCTCAGTACTATTGATCCATCTCAAAGAACCCCTGAGGTGTTCATGTACATGATATCATCCTATAACGGGATCATCTGCTGTGTGAATATGATTTATGATGAAGACGTAGAAAACAAGTTCTGTGATCTCCAGATATGGATATGCAACCCCATTACAAAGGAGACTCTCCTTCTTCCCCAAGGAACACCCTCATTTGAGTTTGAGCCTAGTATAGGAGTGGCTTATGGCTCTGATGTAAGTGACTACAAAGTTTACCGTATTTTTTGCACTGGGAAGATAATTCCTGAAGAAAGAGGACCTGCAGAGGGATTTTATGTTCAAGAAGGTCGGTTTTTTACAAAATACGGTCACTCTTTAGCCTATGAATGCGAGGTTTATTCGTCCAGCACGGGTTCTTGGAAAAACATTGGCACCGTGCCTTGTCTTCCTATGAGTTGTAGTCTTAGGCCATACAGAAGAACTGGACATATTTTTGTCGGAGGAAAAGTTTACTGGCTCGTTTCTTTAGATGCGCCAGGTAAGATTCTCTCAGTAGATTTGGAAGGGAAATTCGAGGTTATAAACTTGCCTGCATATGCAGATGGACTAAGAGAAGACGAGCAGATTACAGAAGCTAGTCATTTGATAAACCTGAAAGGTTCTCTTGGGTTGCTCGTTCTACATCCAGAGAACATGGATGTCTGGGTTTGGAAACACGACGGCGAGAGATATAGTTGGGTTTTTCAATTTAAAGATGTTGTTCCAATAAAAGATGATGAATTGATTTTAGCCGTAACTGCATTAGATAACAAGATCATATGTGTGAATGAAACACATTGGCGTATATATGATATGGAGACTGAAAAGTGGAAGAGAAGAAAGAGCCCTCGTACTGGATTTAGGAATCCTGTTGTGCTCCCATTCACCGAAAGCGTTCTTCCTTGTAACGGCGGTGTGAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

391

Amino Acids

44.39

Weight (kDa)

8.42

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	62 - 321	1.3e-07	F-box associated beta propeller domain
FBA_3	PF08268	84 - 346	3.8e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	791
Acc36I	ACCTGC	1 cut(s)	538
AccB1I	GGYRCC	1 cut(s)	641
AciI	CCGC	2 cut(s)	31, 1161
AclWI	GGATC	2 cut(s)	239, 308
AcsI	RAATTY	2 cut(s)	148, 779
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	3 cut(s)	238, 278, 1102
AfiI	CCNNNNNNNGG	6 cut(s)	176, 297, 443, 536, 1103, 1157
AgsI	TTSAA	2 cut(s)	551, 956
AjnI	CCWGG	1 cut(s)	745
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AloI	GAACNNNNNNTCC	2 cut(s)	531, 563
AluBI	AGCT	2 cut(s)	124, 845
AluI	AGCT	2 cut(s)	124, 845
Alw21I	GWGCWC	2 cut(s)	19, 1128
Alw26I	GTCTC	3 cut(s)	69, 386, 1061
AlwI	GGATC	2 cut(s)	239, 308
AlwNI	CAGNNNCTG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	677
ApoI	RAATTY	2 cut(s)	148, 779
Asp700I	GAANNNNTTC	2 cut(s)	148, 1143
AspLEI	GCGC	1 cut(s)	745
AspS9I	GGNCC	1 cut(s)	527
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	1126
AvaII	GGWCC	1 cut(s)	527
AxyI	CCTNAGG	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	641
BanII	GRGCYC	1 cut(s)	1097
BauI	CACGAG	1 cut(s)	12
BbsI	GAAGAC	3 cut(s)	339, 647, 831
Bbv12I	GWGCWC	2 cut(s)	19, 1128
BccI	CCATC	3 cut(s)	196, 256, 806
BceAI	ACGGC	3 cut(s)	946, 986, 1174
BciT130I	CCWGG	1 cut(s)	747
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	3 cut(s)	69, 386, 1061
BfaI	CTAG	3 cut(s)	171, 438, 846
BfmI	CTRYAG	2 cut(s)	125, 531
BfuAI	ACCTGC	1 cut(s)	538
BglII	AGATCT	1 cut(s)	69
BlpI	GCTNAGC	1 cut(s)	18
BmcAI	AGTACT	1 cut(s)	238
Bme1390I	CCNGG	2 cut(s)	88, 747
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	527
BmiI	GGNNCC	1 cut(s)	643
BmrFI	CCNGG	2 cut(s)	88, 747
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	4 cut(s)	37, 66, 196, 730
BmuI	ACTGGG	1 cut(s)	510
BpiI	GAAGAC	3 cut(s)	339, 647, 831
BpmI	CTGGAG	1 cut(s)	344
Bpu1102I	GCTNAGC	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	409
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	4 cut(s)	213, 243, 702, 732
Bsc4I	CCNNNNNNNGG	6 cut(s)	176, 297, 443, 536, 1103, 1157
Bse1I	ACTGG	4 cut(s)	505, 697, 728, 1108
Bse21I	CCTNAGG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	6 cut(s)	39, 57, 211, 287, 892, 913
BseLI	CCNNNNNNNGG	6 cut(s)	176, 297, 443, 536, 1103, 1157
BseMII	CTCAG	5 cut(s)	32, 80, 247, 255, 774
BseNI	ACTGG	4 cut(s)	505, 697, 728, 1108
BseRI	GAGGAG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	679
BshNI	GGYRCC	1 cut(s)	641
BsiHKAI	GWGCWC	2 cut(s)	19, 1128
BsiSI	CCGG	2 cut(s)	61, 88
BslI	CCNNNNNNNGG	6 cut(s)	176, 297, 443, 536, 1103, 1157
BsmAI	GTCTC	3 cut(s)	69, 386, 1061
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	1 cut(s)	679
Bso31I	GGTCTC	1 cut(s)	69
Bsp1286I	GDGCHC	3 cut(s)	19, 1097, 1128
Bsp1407I	TGTACA	1 cut(s)	276
Bsp143I	GATC	5 cut(s)	69, 244, 300, 355, 1023
Bsp1720I	GCTNAGC	1 cut(s)	18
BspACI	CCGC	2 cut(s)	31, 1161
BspANI	GGCC	1 cut(s)	679
BspCNI	CTCAG	5 cut(s)	31, 79, 246, 256, 773
BspLI	GGNNCC	1 cut(s)	643
BspMAI	CTGCAG	1 cut(s)	535
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	2 cut(s)	239, 308
BspT107I	GGYRCC	1 cut(s)	641
BspTNI	GGTCTC	1 cut(s)	69
BsrGI	TGTACA	1 cut(s)	276
BsrI	ACTGG	4 cut(s)	505, 697, 728, 1108
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	5 cut(s)	69, 244, 300, 355, 1023
BssSI	CACGAG	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	409
Bst2BI	CACGAG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	6 cut(s)	103, 129, 488, 578, 646, 1173
Bst6I	CTCTTC	1 cut(s)	1076
BstAUI	TGTACA	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	801
BstDEI	CTNAG	7 cut(s)	18, 66, 233, 264, 674, 760, 818
BstENI	CCTNNNNNAGG	1 cut(s)	441
BstF5I	GGATG	6 cut(s)	39, 57, 211, 287, 892, 913
BstHHI	GCGC	1 cut(s)	745
BstKTI	GATC	5 cut(s)	72, 247, 303, 358, 1026
BstMAI	GTCTC	3 cut(s)	69, 386, 1061
BstMBI	GATC	5 cut(s)	69, 244, 300, 355, 1023
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 1007
BstNI	CCWGG	1 cut(s)	747
BstSCI	CCNGG	2 cut(s)	86, 745
BstSFI	CTRYAG	2 cut(s)	125, 531
BstV2I	GAAGAC	3 cut(s)	339, 647, 831
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	679
BtsCI	GGATG	6 cut(s)	39, 57, 211, 287, 892, 913
BtsIMutI	CAGTG	1 cut(s)	498
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	1 cut(s)	801
CaiI	CAGNNNCTG	1 cut(s)	140
CfoI	GCGC	1 cut(s)	745
Cfr13I	GGNCC	1 cut(s)	527
Csp6I	GTAC	3 cut(s)	237, 277, 1101
CviAII	CATG	3 cut(s)	274, 280, 904
CviQI	GTAC	3 cut(s)	237, 277, 1101
DdeI	CTNAG	7 cut(s)	18, 66, 233, 264, 674, 760, 818
DpnI	GATC	5 cut(s)	71, 246, 302, 357, 1025
DpnII	GATC	5 cut(s)	69, 244, 300, 355, 1023
DraI	TTTAAA	1 cut(s)	961
Eam1104I	CTCTTC	1 cut(s)	1076
EarI	CTCTTC	1 cut(s)	1076
Eco130I	CCWWGG	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	1097
Eco31I	GGTCTC	1 cut(s)	69
Eco32I	GATATC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	537
Eco81I	CCTNAGG	1 cut(s)	264
EcoNI	CCTNNNNNAGG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	527
EcoRI	GAATTC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	745
EcoRV	GATATC	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	1097
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	3 cut(s)	277, 283, 907
FalI	AAGNNNNNCTT	2 cut(s)	858, 890
FatI	CATG	3 cut(s)	273, 279, 903
FauNDI	CATATG	2 cut(s)	805, 1028
FokI	GGATG	6 cut(s)	44, 46, 218, 274, 879, 920
FriOI	GRGCYC	1 cut(s)	1097
FspBI	CTAG	3 cut(s)	171, 438, 846
GlaI	GCGC	1 cut(s)	744
GsuI	CTGGAG	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	679
HapII	CCGG	2 cut(s)	61, 88
HhaI	GCGC	1 cut(s)	745
Hin1II	CATG	3 cut(s)	277, 283, 907
Hin6I	GCGC	1 cut(s)	743
HinP1I	GCGC	1 cut(s)	743
HinfI	GANTC	4 cut(s)	137, 394, 754, 1114
HpaII	CCGG	2 cut(s)	61, 88
HphI	GGTGA	1 cut(s)	1126
Hpy166II	GTNNAC	3 cut(s)	221, 484, 721
Hpy188I	TCNGA	3 cut(s)	69, 463, 710
Hpy188III	TCNNGA	5 cut(s)	141, 361, 515, 551, 896
Hpy8I	GTNNAC	3 cut(s)	221, 484, 721
Hpy99I	CGWCG	1 cut(s)	932
HpyAV	CCTTC	3 cut(s)	410, 548, 767
HpyCH4III	ACNGT	6 cut(s)	103, 129, 488, 578, 646, 1173
HpyCH4IV	ACGT	1 cut(s)	336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 1007
HpyF3I	CTNAG	7 cut(s)	18, 66, 233, 264, 674, 760, 818
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	277, 283, 907
HspAI	GCGC	1 cut(s)	743
Kzo9I	GATC	5 cut(s)	69, 244, 300, 355, 1023
LmnI	GCTCC	1 cut(s)	1131
LweI	GCATC	4 cut(s)	37, 66, 196, 730
MaeI	CTAG	3 cut(s)	171, 438, 846
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	4 cut(s)	470, 578, 1003, 1154
MalI	GATC	5 cut(s)	71, 246, 302, 357, 1025
MboI	GATC	5 cut(s)	69, 244, 300, 355, 1023
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	3 cut(s)	19, 1097, 1128
MluCI	AATT	5 cut(s)	148, 510, 779, 956, 989
MlyI	GAGTC	1 cut(s)	388
MmeI	TCCRAC	1 cut(s)	688
MroXI	GAANNNNTTC	2 cut(s)	148, 1143
MseI	TTAA	1 cut(s)	960
MslI	CAYNNNNRTG	2 cut(s)	278, 1031
MspI	CCGG	2 cut(s)	61, 88
MspR9I	CCNGG	2 cut(s)	88, 747
Mva1269I	GAATGC	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	747
MwoI	GCNNNNNNNGC	2 cut(s)	28, 1007
NciI	CCSGG	1 cut(s)	88
NdeI	CATATG	2 cut(s)	805, 1028
NdeII	GATC	5 cut(s)	69, 244, 300, 355, 1023
NlaIII	CATG	3 cut(s)	277, 283, 907
NlaIV	GGNNCC	1 cut(s)	643
NmuCI	GTSAC	2 cut(s)	470, 578
PcsI	WCGNNNNNNNCGW	1 cut(s)	19
PctI	GAATGC	1 cut(s)	602
PdmI	GAANNNNTTC	2 cut(s)	148, 1143
PfeI	GAWTC	3 cut(s)	137, 754, 1114
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PpuMI	RGGWCCY	1 cut(s)	527
PsiI	TTATAA	1 cut(s)	791
Psp5II	RGGWCCY	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	1 cut(s)	643
PspPI	GGNCC	1 cut(s)	527
PspPPI	RGGWCCY	1 cut(s)	527
PstI	CTGCAG	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	69
RsaI	GTAC	3 cut(s)	238, 278, 1102
RsaNI	GTAC	3 cut(s)	237, 277, 1101
RseI	CAYNNNNRTG	2 cut(s)	278, 1031
SaqAI	TTAA	1 cut(s)	960
Sau3AI	GATC	5 cut(s)	69, 244, 300, 355, 1023
Sau96I	GGNCC	1 cut(s)	527
ScaI	AGTACT	1 cut(s)	238
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	2 cut(s)	88, 747
SduI	GDGCHC	3 cut(s)	19, 1097, 1128
SfaNI	GCATC	4 cut(s)	37, 66, 196, 730
SfcI	CTRYAG	2 cut(s)	125, 531
SinI	GGWCC	1 cut(s)	527
SmiMI	CAYNNNNRTG	2 cut(s)	278, 1031
Sse9I	AATT	5 cut(s)	148, 510, 779, 956, 989
SsiI	CCGC	2 cut(s)	31, 1161
SspMI	CTAG	3 cut(s)	171, 438, 846
StyD4I	CCNGG	2 cut(s)	86, 745
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	6 cut(s)	103, 129, 488, 578, 646, 1173
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	2 cut(s)	200, 783
TaqII	GACCGA	1 cut(s)	64
TasI	AATT	5 cut(s)	148, 510, 779, 956, 989
TatI	WGTACW	2 cut(s)	236, 276
TfiI	GAWTC	3 cut(s)	137, 754, 1114
Tru1I	TTAA	1 cut(s)	960
Tru9I	TTAA	1 cut(s)	960
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	2 cut(s)	470, 578
Tsp45I	GTSAC	2 cut(s)	470, 578
TspDTI	ATGAA	7 cut(s)	141, 203, 262, 345, 609, 1002, 1053
TspRI	CASTG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	527
XagI	CCTNNNNNAGG	1 cut(s)	441
XapI	RAATTY	2 cut(s)	148, 779
XmnI	GAANNNNTTC	2 cut(s)	148, 1143
XspI	CTAG	3 cut(s)	171, 438, 846
ZrmI	AGTACT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.