Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Forward (+)

32339933 .. 32340632

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG267100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAAATGGTGAATTCTGTTGGTAATTGTATCCAAAGGAAGAATGTTGAGTGGTTGGATCTGCAATCTTTCGAAGGTGTGATCGATAATGTACTTTCATCGCTCCCTGTCAAGTGCCTTCTAAATGTTAAGGCTGTTTCTAAATTCTTGCGTGATTTGATTCATAGTCAAGCTTTCATTAGATTCCATTTAAGTCGGTCAAGAGAAAATGCCTTGTATATATTTTTCCCTTTTATGCCAATTAACAGAAACATATACATCATTGATGCTGATGCGGTAGTCACTGAAACACTCACTCTTCCTACTGATGAGAATCTATCAACTCTTAGTATGGTTTGTTCCTATAATGGTTTGATTTGTCTCACCAATTTTCCCGTGACTCTTTACTCATATAGTTCTCAAGGAGTGGCAGTGGCAGACTTGGAAATCCTGATCTGCAATCCCGCCACTCATGAAGTTGGTTTACTTCCTAAATGTAGCCCATCGGAAGAGGACCTAGGCATTGGTGTTGCCTTTGGCCCAGAGATCAACCTGAAAGAGTCCTCCCTCCAGAGTGTGAGATATATTCATCCAGAACTGGAACCTGGAGTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

198

Amino Acids

21.98

Weight (kDa)

4.83

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	275, 444
AclWI	GGATC	1 cut(s)	66
AcsI	RAATTY	2 cut(s)	13, 143
AfaI	GTAC	1 cut(s)	93
AjnI	CCWGG	1 cut(s)	583
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	66
AoxI	GGCC	1 cut(s)	517
ApoI	RAATTY	2 cut(s)	13, 143
AspA2I	CCTAGG	1 cut(s)	496
AspS9I	GGNCC	2 cut(s)	493, 518
AsuHPI	GGTGA	2 cut(s)	22, 355
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	493
AvrII	CCTAGG	1 cut(s)	496
BarI	GAAGNNNNNNTAC	2 cut(s)	447, 479
BccI	CCATC	1 cut(s)	490
BciT130I	CCWGG	1 cut(s)	585
BciVI	GTATCC	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	1 cut(s)	497
BfuI	GTATCC	1 cut(s)	41
BlnI	CCTAGG	1 cut(s)	496
Bme1390I	CCNGG	1 cut(s)	585
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	2 cut(s)	493, 518
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	1 cut(s)	585
BmsI	GCATC	2 cut(s)	256, 262
BpmI	CTGGAG	1 cut(s)	533
Bpu14I	TTCGAA	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	384
Bsa29I	ATCGAT	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	496
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bse1I	ACTGG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	585
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	496
BseGI	GGATG	1 cut(s)	568
BseJI	GATNNNNATC	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	582
BshFI	GGCC	1 cut(s)	519
BshVI	ATCGAT	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	519
Bsp119I	TTCGAA	1 cut(s)	72
Bsp143I	GATC	4 cut(s)	58, 81, 432, 525
BspACI	CCGC	2 cut(s)	275, 444
BspANI	GGCC	1 cut(s)	519
BspDI	ATCGAT	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	582
BspPI	GGATC	1 cut(s)	66
BspT104I	TTCGAA	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	582
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	4 cut(s)	58, 81, 432, 525
BssT1I	CCWWGG	1 cut(s)	496
Bst2UI	CCWGG	1 cut(s)	585
Bst6I	CTCTTC	2 cut(s)	303, 483
BstBI	TTCGAA	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	568
BstKTI	GATC	4 cut(s)	61, 84, 435, 528
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	4 cut(s)	58, 81, 432, 525
BstNI	CCWGG	1 cut(s)	585
BstSCI	CCNGG	1 cut(s)	583
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	519
BsuTUI	ATCGAT	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	2 cut(s)	282, 417
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	2 cut(s)	493, 518
ClaI	ATCGAT	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	1 cut(s)	452
CviJI	RGCY	4 cut(s)	134, 173, 480, 519
CviKI_1	RGCY	4 cut(s)	134, 173, 480, 519
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	4 cut(s)	60, 83, 434, 527
DpnII	GATC	4 cut(s)	58, 81, 432, 525
Eam1104I	CTCTTC	2 cut(s)	303, 483
EarI	CTCTTC	2 cut(s)	303, 483
Eco130I	CCWWGG	1 cut(s)	496
Eco47I	GGWCC	1 cut(s)	493
EcoO109I	RGGNCCY	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	1 cut(s)	455
FatI	CATG	1 cut(s)	451
FauI	CCCGC	1 cut(s)	451
FokI	GGATG	1 cut(s)	555
FspBI	CTAG	1 cut(s)	497
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	1 cut(s)	519
Hin1II	CATG	1 cut(s)	455
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	5 cut(s)	160, 183, 313, 379, 539
HphI	GGTGA	2 cut(s)	22, 355
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	5 cut(s)	201, 430, 452, 550, 572
Hpy8I	GTNNAC	1 cut(s)	464
HpyAV	CCTTC	2 cut(s)	68, 128
HpyCH4V	TGCA	3 cut(s)	64, 438, 593
HpyF3I	CTNAG	1 cut(s)	326
Hsp92II	CATG	1 cut(s)	455
Kzo9I	GATC	4 cut(s)	58, 81, 432, 525
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	8 cut(s)	120, 443, 534, 545, 563, 563, 570, 585
LweI	GCATC	2 cut(s)	256, 262
MaeI	CTAG	1 cut(s)	497
MaeIII	GTNAC	2 cut(s)	280, 376
MalI	GATC	4 cut(s)	60, 83, 434, 527
MboI	GATC	4 cut(s)	58, 81, 432, 525
MboII	GAAGA	3 cut(s)	52, 290, 500
MflI	RGATCY	1 cut(s)	58
MluCI	AATT	5 cut(s)	13, 25, 143, 240, 367
MlyI	GAGTC	2 cut(s)	373, 548
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	3 cut(s)	484, 553, 557
MseI	TTAA	3 cut(s)	129, 191, 243
MspR9I	CCNGG	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	585
NdeII	GATC	4 cut(s)	58, 81, 432, 525
NlaIII	CATG	1 cut(s)	455
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	2 cut(s)	280, 376
NspV	TTCGAA	1 cut(s)	72
PagI	TCATGA	1 cut(s)	451
PfeI	GAWTC	3 cut(s)	160, 183, 313
PleI	GAGTC	2 cut(s)	373, 547
PpsI	GAGTC	2 cut(s)	373, 547
PpuMI	RGGWCCY	1 cut(s)	493
Psp5II	RGGWCCY	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	2 cut(s)	493, 518
PspPPI	RGGWCCY	1 cut(s)	493
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	129, 191, 243
Sau3AI	GATC	4 cut(s)	58, 81, 432, 525
Sau96I	GGNCC	2 cut(s)	493, 518
SchI	GAGTC	2 cut(s)	373, 548
ScrFI	CCNGG	1 cut(s)	585
SetI	ASST	5 cut(s)	79, 175, 498, 534, 586
SfaNI	GCATC	2 cut(s)	256, 262
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	1 cut(s)	493
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
Sse9I	AATT	5 cut(s)	13, 25, 143, 240, 367
SsiI	CCGC	2 cut(s)	275, 444
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	583
StyI	CCWWGG	1 cut(s)	496
TaqI	TCGA	2 cut(s)	72, 84
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	5 cut(s)	13, 25, 143, 240, 367
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	3 cut(s)	160, 183, 313
Tru1I	TTAA	3 cut(s)	129, 191, 243
Tru9I	TTAA	3 cut(s)	129, 191, 243
TscAI	CASTG	2 cut(s)	289, 417
TseFI	GTSAC	2 cut(s)	280, 376
Tsp45I	GTSAC	2 cut(s)	280, 376
TspDTI	ATGAA	5 cut(s)	87, 152, 166, 468, 557
TspRI	CASTG	2 cut(s)	289, 417
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	2 cut(s)	13, 143
XmaJI	CCTAGG	1 cut(s)	496
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.