Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Forward (+)

32358847 .. 32359785

Gene Structure 939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033798

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAAACAGGATGAATTTTTTGTTAAGCTTATCCAGAGGAAGACTGCTGGTTGGTTCAATGTGGAATCTGCTGAAGATCTGCTTGGCAATATTCTTTCAAGGCTTCCAGTTAAGCTCCTTCTAACTATCAAGGTCGTTTCTAAACTTTGGCATAGATTGATTTGCAGTCCAAATTTCACTAGACTGCATTTAAGCAAATCAAGAGAAAAGTCCATCTATATACTTTATACTTTTATGGATGCTAAAAGAAGTCTGTATTTCATGGATGCTGACGGGGTGATCACCGGAACAATCAGTCTTCCTGGTTTAAAAAATATACCATCTCTATGTATGATTGCTTCCTACAGTGGGTTGATATGTTTAACTAATTATCCTTGGTTTCCTCATTCATTTAAGACTCGAGCAGTAGTGACAGGCTTGGAAATCCGAATTTGCAATCCTGCAACTCGTGAAGTTTGGCTACTTCCTAATGGGAGCCCACAGAAACAGGAGCTAGGAATTGGGGTTGCCTTTGGCCCTAGAATCAGTGAGTATAGGGTACTTCGGTTTTTTTGTTCCAAATCCAAATCTGATGCAATTCACCCTGAGTGTGAGATATTTTCATCAAGCACTGGAACCTGGAGAAGCTTAGGTTTTGTTCAGCATTGTCGTATGGGTGCACATCATGTATTTGTTCATGGAAAATTTTTTTGGTTTATTCCTTCAGAAGAAGATCATAATATCCCTGGATCCATTCTTTCAGTTGGTTTGGACGAAGATTTTAGAATTATCAGACTTCCAGTTGAGGTCACTGAACATGCCTTCTTGGTTGATCTTGAAGGTCAATTATCACTGATCGTTGTATTTGATGATGATGACACTATGGTTATATGGATTTTGAAGGATGAAAATGAGTCCATTTGGGAGGAGAAATGTCGTGATGGTATTCCGGCCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

313

Amino Acids

35.61

Weight (kDa)

6.56

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	25 - 61	9e-07	F-box domain
FBA_3	PF08268	107 - 304	1.1e-16	F-box associated beta propeller domain
FBA_1	PF07734	142 - 304	1.6e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	723, 736
AcsI	RAATTY	4 cut(s)	14, 172, 429, 683
AcuI	CTGAAG	2 cut(s)	93, 687
AfaI	GTAC	1 cut(s)	540
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	4 cut(s)	58, 99, 818, 880
AjnI	CCWGG	3 cut(s)	301, 617, 724
AjuI	GAANNNNNNNTTGG	4 cut(s)	66, 98, 673, 705
AluBI	AGCT	4 cut(s)	28, 115, 493, 627
AluI	AGCT	4 cut(s)	28, 115, 493, 627
Alw21I	GWGCWC	1 cut(s)	661
Alw44I	GTGCAC	1 cut(s)	657
AlwI	GGATC	2 cut(s)	723, 736
Ama87I	CYCGRG	1 cut(s)	399
AoxI	GGCC	2 cut(s)	514, 930
ApaLI	GTGCAC	1 cut(s)	657
ApoI	RAATTY	4 cut(s)	14, 172, 429, 683
AspS9I	GGNCC	2 cut(s)	515, 931
AsuHPI	GGTGA	3 cut(s)	274, 289, 572
AvaI	CYCGRG	1 cut(s)	399
BaeGI	GKGCMC	1 cut(s)	661
BaeI	ACNNNNGTAYC	2 cut(s)	530, 563
BamHI	GGATCC	1 cut(s)	728
BanII	GRGCYC	1 cut(s)	479
BarI	GAAGNNNNNNTAC	4 cut(s)	322, 354, 444, 476
BauI	CACGAG	1 cut(s)	447
BbsI	GAAGAC	2 cut(s)	47, 290
Bbv12I	GWGCWC	1 cut(s)	661
BccI	CCATC	3 cut(s)	221, 328, 914
BciT130I	CCWGG	3 cut(s)	303, 619, 726
BclI	TGATCA	1 cut(s)	279
BfaI	CTAG	3 cut(s)	180, 494, 519
BfmI	CTRYAG	1 cut(s)	343
BglII	AGATCT	1 cut(s)	76
Bme1390I	CCNGG	3 cut(s)	303, 619, 726
BmeT110I	CYCGRG	1 cut(s)	399
BmgT120I	GGNCC	2 cut(s)	515, 931
BmiI	GGNNCC	3 cut(s)	476, 616, 730
BmrFI	CCNGG	3 cut(s)	303, 619, 726
BmsI	GCATC	3 cut(s)	229, 256, 562
BpiI	GAAGAC	2 cut(s)	47, 290
BpmI	CTGGAG	1 cut(s)	640
Bpu10I	CCTNAGC	1 cut(s)	628
BsaJI	CCNNGG	2 cut(s)	374, 724
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse1I	ACTGG	3 cut(s)	107, 616, 779
BseBI	CCWGG	3 cut(s)	303, 619, 726
BseDI	CCNNGG	2 cut(s)	374, 724
BseGI	GGATG	4 cut(s)	16, 244, 271, 889
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	3 cut(s)	107, 616, 779
BseRI	GAGGAG	1 cut(s)	920
BseSI	GKGCMC	1 cut(s)	661
BshFI	GGCC	2 cut(s)	516, 932
BsiHKAI	GWGCWC	1 cut(s)	661
BsiHKCI	CYCGRG	1 cut(s)	399
BsiSI	CCGG	2 cut(s)	285, 929
BslI	CCNNNNNNNGG	1 cut(s)	348
BsnI	GGCC	2 cut(s)	516, 932
BsoBI	CYCGRG	1 cut(s)	399
Bsp1286I	GDGCHC	2 cut(s)	479, 661
Bsp143I	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
BspANI	GGCC	2 cut(s)	516, 932
BspCNI	CTCAG	1 cut(s)	577
BspLI	GGNNCC	3 cut(s)	476, 616, 730
BspPI	GGATC	2 cut(s)	723, 736
BsrI	ACTGG	3 cut(s)	107, 616, 779
BssECI	CCNNGG	2 cut(s)	374, 724
BssMI	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	3 cut(s)	303, 619, 726
Bst4CI	ACNGT	1 cut(s)	347
BstDEI	CTNAG	2 cut(s)	585, 628
BstF5I	GGATG	4 cut(s)	16, 244, 271, 889
BstKTI	GATC	6 cut(s)	79, 282, 715, 731, 814, 837
BstMBI	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
BstNI	CCWGG	3 cut(s)	303, 619, 726
BstNSI	RCATGY	1 cut(s)	800
BstSCI	CCNGG	3 cut(s)	301, 617, 724
BstSFI	CTRYAG	1 cut(s)	343
BstSLI	GKGCMC	1 cut(s)	661
BstV2I	GAAGAC	2 cut(s)	47, 290
BstX2I	RGATCY	2 cut(s)	76, 728
BstYI	RGATCY	2 cut(s)	76, 728
BsuRI	GGCC	2 cut(s)	516, 932
BtsCI	GGATG	4 cut(s)	16, 244, 271, 889
BtsIMutI	CAGTG	5 cut(s)	352, 532, 609, 789, 830
Cfr13I	GGNCC	2 cut(s)	515, 931
Csp6I	GTAC	1 cut(s)	539
CviAII	CATG	4 cut(s)	262, 665, 677, 797
CviQI	GTAC	1 cut(s)	539
DdeI	CTNAG	2 cut(s)	585, 628
DpnI	GATC	6 cut(s)	78, 281, 714, 730, 813, 836
DpnII	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
DraI	TTTAAA	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	374
Eco24I	GRGCYC	1 cut(s)	479
Eco57I	CTGAAG	2 cut(s)	93, 687
Eco88I	CYCGRG	1 cut(s)	399
EcoRII	CCWGG	3 cut(s)	301, 617, 724
EcoT14I	CCWWGG	1 cut(s)	374
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	4 cut(s)	265, 668, 680, 800
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FatI	CATG	4 cut(s)	261, 664, 676, 796
FbaI	TGATCA	1 cut(s)	279
FokI	GGATG	4 cut(s)	23, 251, 278, 896
FriOI	GRGCYC	1 cut(s)	479
FspBI	CTAG	3 cut(s)	180, 494, 519
GsuI	CTGGAG	1 cut(s)	640
HaeIII	GGCC	2 cut(s)	516, 932
HapII	CCGG	2 cut(s)	285, 929
Hin1II	CATG	4 cut(s)	265, 668, 680, 800
HindIII	AAGCTT	2 cut(s)	26, 625
HinfI	GANTC	4 cut(s)	65, 397, 522, 893
HpaII	CCGG	2 cut(s)	285, 929
HphI	GGTGA	3 cut(s)	274, 289, 572
Hpy166II	GTNNAC	1 cut(s)	659
Hpy188I	TCNGA	4 cut(s)	428, 571, 706, 773
Hpy188III	TCNNGA	5 cut(s)	34, 201, 449, 815, 917
Hpy8I	GTNNAC	1 cut(s)	659
HpyAV	CCTTC	5 cut(s)	128, 711, 811, 812, 874
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4V	TGCA	6 cut(s)	165, 187, 435, 443, 575, 659
HpyF3I	CTNAG	2 cut(s)	585, 628
Hsp92II	CATG	4 cut(s)	265, 668, 680, 800
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
LmnI	GCTCC	3 cut(s)	120, 474, 490
LweI	GCATC	3 cut(s)	229, 256, 562
MaeI	CTAG	3 cut(s)	180, 494, 519
MaeIII	GTNAC	2 cut(s)	409, 787
MalI	GATC	6 cut(s)	78, 281, 714, 730, 813, 836
MboI	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
MboII	GAAGA	6 cut(s)	52, 86, 290, 719, 722, 767
MflI	RGATCY	2 cut(s)	76, 728
MhlI	GDGCHC	2 cut(s)	479, 661
MluCI	AATT	9 cut(s)	14, 172, 367, 429, 498, 576, 683, 765, 824
MlyI	GAGTC	2 cut(s)	391, 902
MnlI	CCTC	4 cut(s)	30, 393, 778, 898
MseI	TTAA	6 cut(s)	24, 111, 191, 308, 362, 393
MslI	CAYNNNNRTG	1 cut(s)	325
MspI	CCGG	2 cut(s)	285, 929
MspR9I	CCNGG	3 cut(s)	303, 619, 726
MvaI	CCWGG	3 cut(s)	303, 619, 726
NdeII	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
NlaIII	CATG	4 cut(s)	265, 668, 680, 800
NlaIV	GGNNCC	3 cut(s)	476, 616, 730
NmuCI	GTSAC	2 cut(s)	409, 787
NspI	RCATGY	1 cut(s)	800
PaeR7I	CTCGAG	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	65, 522
PleI	GAGTC	2 cut(s)	391, 901
PpsI	GAGTC	2 cut(s)	391, 901
Psp6I	CCWGG	3 cut(s)	301, 617, 724
PspGI	CCWGG	3 cut(s)	301, 617, 724
PspN4I	GGNNCC	3 cut(s)	476, 616, 730
PspPI	GGNCC	2 cut(s)	515, 931
PspXI	VCTCGAGB	1 cut(s)	399
PsuI	RGATCY	2 cut(s)	76, 728
RsaI	GTAC	1 cut(s)	540
RsaNI	GTAC	1 cut(s)	539
RseI	CAYNNNNRTG	1 cut(s)	325
SaqAI	TTAA	6 cut(s)	24, 111, 191, 308, 362, 393
Sau3AI	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
Sau96I	GGNCC	2 cut(s)	515, 931
SchI	GAGTC	2 cut(s)	391, 902
ScrFI	CCNGG	3 cut(s)	303, 619, 726
SduI	GDGCHC	2 cut(s)	479, 661
SetI	ASST	9 cut(s)	30, 117, 135, 495, 620, 629, 634, 789, 823
SfaNI	GCATC	3 cut(s)	229, 256, 562
SfcI	CTRYAG	1 cut(s)	343
Sfr274I	CTCGAG	1 cut(s)	399
SlaI	CTCGAG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
Sse9I	AATT	9 cut(s)	14, 172, 367, 429, 498, 576, 683, 765, 824
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	3 cut(s)	180, 494, 519
StyD4I	CCNGG	3 cut(s)	301, 617, 724
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	400
TasI	AATT	9 cut(s)	14, 172, 367, 429, 498, 576, 683, 765, 824
TfiI	GAWTC	2 cut(s)	65, 522
Tru1I	TTAA	6 cut(s)	24, 111, 191, 308, 362, 393
Tru9I	TTAA	6 cut(s)	24, 111, 191, 308, 362, 393
TscAI	CASTG	5 cut(s)	352, 532, 616, 796, 837
TseFI	GTSAC	2 cut(s)	409, 787
Tsp45I	GTSAC	2 cut(s)	409, 787
TspDTI	ATGAA	7 cut(s)	17, 27, 250, 378, 591, 665, 900
TspRI	CASTG	5 cut(s)	352, 532, 616, 796, 837
VneI	GTGCAC	1 cut(s)	657
XapI	RAATTY	4 cut(s)	14, 172, 429, 683
XceI	RCATGY	1 cut(s)	800
XhoI	CTCGAG	1 cut(s)	399
XspI	CTAG	3 cut(s)	180, 494, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.