Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Forward (+)

31978167 .. 31983186

Gene Structure 5020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG290600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAAGCAGGATGAATTTTTTGTTAATCTTATCCAGAGGAAGAGTGCTGGTTGGTTCAATGTGGAATCTGCTGAAGATCTGCTTGGCAATATTCTTTCAAGGCTTCCAGTAAATCTCCTTCTAACTATCAAGGTCGTTTCTAAACTTTGGCATAGATTGATTTGCAGTCCAAATTTCACTAGACTGCATTTAAGCAAATCAAGAGAAAAGTCCATCTATATACTTTATCCTTTTATGGATGCTAAAAGAAGTCTGTATTTCATGGATGCTGACGGGGTGATCACCGGAACAATCAGTCTTCCTGGTTTAAAAAATATACCATCTCTATGTATGATTGCTTCATACAATGGGTTGATATGTTTCACTAATTATCCTTGGTTTCCTCATTCATTTAAGACTCAAGCAGTAGTGACAGGCTTGGAAATCCGAATTTGCAATCCTGCAACTCGTGAAGTTTGGCTACTTCCTAATGGGAGCCAAATGAAACAGGAGCTAGGAATTGGGGTTGCCTTTGGCCCGGGAATCAGTGAGTATAGGGTACTTCGGTTTTTCTGTTCCAAATCCAAATCTGATGTAATTCACCCTGAGTGTGAGATATTTTCATCAAGCACTGGAACCTGGAGAAGCTTAGGTTTTGTCCAGCATTGTCCTATGGGTGCACATCATGCATTTGTTCATGGAAAAGTTTTTTGGTTTATTCCTTCAGAAGAAGATCATAATATCCCTGGATCCATTCTTTCAGTTGGTTTGGACGAAGATTTTAGAATTATCAGACTTCCAGTTGCAGTCACTGAACATGCCTTCTTGGTTGATCTTGAAGGTCAATTATCACTGATCGTTGTATTTGATGATGATGACACTATGGTTATATGGATTTTGAAGGATGAAAATGAGTCCATTTGGGAGGAGAAATGTCGTGATGGTATTCCCTATGAAACTGTGGAGTGTCTTGACTCTGTAGCTGCAAGAAAAACTGACATTTTTTTCATCACTGAAGAACGCTATTTCATCTTCAGTATGATAAAAATGTCCTGGAAAGAAACTCATTTCAAAGAACTATTTGAACAACATTCTCCTGTTGTTTTTACGTACACAGAAAGCCTCCTCCCTTGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

372

Amino Acids

42.67

Weight (kDa)

5.73

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	25 - 61	4.7e-06	F-box domain
FBA_3	PF08268	107 - 311	2.2e-17	F-box associated beta propeller domain
FBA_1	PF07734	142 - 369	1e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	723, 736
AcsI	RAATTY	3 cut(s)	14, 172, 429
AcuI	CTGAAG	4 cut(s)	93, 687, 997, 1014
AfaI	GTAC	2 cut(s)	540, 1091
AgsI	TTSAA	6 cut(s)	58, 99, 818, 880, 1051, 1064
AjnI	CCWGG	4 cut(s)	301, 617, 724, 1031
AjuI	GAANNNNNNNTTGG	4 cut(s)	66, 98, 673, 705
AluBI	AGCT	3 cut(s)	493, 627, 962
AluI	AGCT	3 cut(s)	493, 627, 962
Alw21I	GWGCWC	1 cut(s)	661
Alw44I	GTGCAC	1 cut(s)	657
AlwI	GGATC	2 cut(s)	723, 736
AlwNI	CAGNNNCTG	1 cut(s)	791
Ama87I	CYCGRG	1 cut(s)	517
AoxI	GGCC	1 cut(s)	514
ApaLI	GTGCAC	1 cut(s)	657
ApeKI	GCWGC	1 cut(s)	962
ApoI	RAATTY	3 cut(s)	14, 172, 429
AspS9I	GGNCC	1 cut(s)	515
AsuC2I	CCSGG	2 cut(s)	518, 519
AsuHPI	GGTGA	3 cut(s)	274, 289, 572
AvaI	CYCGRG	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	661
BaeI	ACNNNNGTAYC	2 cut(s)	530, 563
BamHI	GGATCC	1 cut(s)	728
BarI	GAAGNNNNNNTAC	6 cut(s)	102, 134, 322, 354, 444, 476
BauI	CACGAG	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	661
BbvI	GCAGC	1 cut(s)	949
BccI	CCATC	3 cut(s)	221, 328, 914
BciT130I	CCWGG	4 cut(s)	303, 619, 726, 1033
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	2 cut(s)	518, 519
BfaI	CTAG	2 cut(s)	180, 494
BfmI	CTRYAG	1 cut(s)	957
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	1 cut(s)	963
BlsI	GCNGC	1 cut(s)	964
Bme1390I	CCNGG	6 cut(s)	303, 518, 519, 619, 726, 1033
BmeT110I	CYCGRG	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	3 cut(s)	476, 616, 730
BmrFI	CCNGG	6 cut(s)	303, 518, 519, 619, 726, 1033
BmsI	GCATC	2 cut(s)	229, 256
BpiI	GAAGAC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	640
Bpu10I	CCTNAGC	1 cut(s)	628
BpuEI	CTTGAG	1 cut(s)	384
BpuMI	CCSGG	2 cut(s)	518, 519
BsaAI	YACGTR	1 cut(s)	1089
BsaJI	CCNNGG	3 cut(s)	374, 517, 724
BsaWI	WCCGGW	1 cut(s)	284
Bse1I	ACTGG	3 cut(s)	107, 616, 779
BseBI	CCWGG	4 cut(s)	303, 619, 726, 1033
BseDI	CCNNGG	3 cut(s)	374, 517, 724
BseGI	GGATG	4 cut(s)	16, 244, 271, 889
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	3 cut(s)	107, 616, 779
BseRI	GAGGAG	2 cut(s)	920, 1094
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	1 cut(s)	949
BshFI	GGCC	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	661
BsiHKCI	CYCGRG	1 cut(s)	517
BsiSI	CCGG	2 cut(s)	285, 518
BsnI	GGCC	1 cut(s)	516
BsoBI	CYCGRG	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp143I	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
BspANI	GGCC	1 cut(s)	516
BspCNI	CTCAG	1 cut(s)	577
BspLI	GGNNCC	3 cut(s)	476, 616, 730
BspPI	GGATC	2 cut(s)	723, 736
BsrI	ACTGG	3 cut(s)	107, 616, 779
BssECI	CCNNGG	3 cut(s)	374, 517, 724
BssMI	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	4 cut(s)	303, 619, 726, 1033
Bst4CI	ACNGT	1 cut(s)	940
Bst6I	CTCTTC	1 cut(s)	35
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstBAI	YACGTR	1 cut(s)	1089
BstDEI	CTNAG	2 cut(s)	585, 628
BstF5I	GGATG	4 cut(s)	16, 244, 271, 889
BstKTI	GATC	6 cut(s)	79, 282, 715, 731, 814, 837
BstMBI	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
BstMWI	GCNNNNNNNGC	1 cut(s)	665
BstNI	CCWGG	4 cut(s)	303, 619, 726, 1033
BstNSI	RCATGY	1 cut(s)	800
BstSCI	CCNGG	6 cut(s)	301, 516, 517, 617, 724, 1031
BstSFI	CTRYAG	1 cut(s)	957
BstSLI	GKGCMC	1 cut(s)	661
BstSNI	TACGTA	1 cut(s)	1089
BstV1I	GCAGC	1 cut(s)	949
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	2 cut(s)	76, 728
BstYI	RGATCY	2 cut(s)	76, 728
BsuRI	GGCC	1 cut(s)	516
BtsCI	GGATG	4 cut(s)	16, 244, 271, 889
BtsIMutI	CAGTG	6 cut(s)	532, 609, 789, 830, 990, 1114
CaiI	CAGNNNCTG	1 cut(s)	791
Cfr13I	GGNCC	1 cut(s)	515
Cfr9I	CCCGGG	1 cut(s)	517
Csp6I	GTAC	2 cut(s)	539, 1090
CviAII	CATG	4 cut(s)	262, 665, 677, 797
CviJI	RGCY	9 cut(s)	103, 417, 460, 477, 493, 516, 627, 962, 1101
CviKI_1	RGCY	9 cut(s)	103, 417, 460, 477, 493, 516, 627, 962, 1101
CviQI	GTAC	2 cut(s)	539, 1090
DdeI	CTNAG	2 cut(s)	585, 628
DpnI	GATC	6 cut(s)	78, 281, 714, 730, 813, 836
DpnII	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
DraI	TTTAAA	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco105I	TACGTA	1 cut(s)	1089
Eco130I	CCWWGG	1 cut(s)	374
Eco57I	CTGAAG	4 cut(s)	93, 687, 997, 1014
Eco88I	CYCGRG	1 cut(s)	517
EcoRII	CCWGG	4 cut(s)	301, 617, 724, 1031
EcoT14I	CCWWGG	1 cut(s)	374
EcoT22I	ATGCAT	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	4 cut(s)	265, 668, 680, 800
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FatI	CATG	4 cut(s)	261, 664, 676, 796
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	963
FokI	GGATG	4 cut(s)	23, 251, 278, 896
Fsp4HI	GCNGC	1 cut(s)	963
FspBI	CTAG	2 cut(s)	180, 494
GluI	GCNGC	1 cut(s)	963
GsuI	CTGGAG	1 cut(s)	640
HaeIII	GGCC	1 cut(s)	516
HapII	CCGG	2 cut(s)	285, 518
Hin1II	CATG	4 cut(s)	265, 668, 680, 800
HindIII	AAGCTT	1 cut(s)	625
HinfI	GANTC	5 cut(s)	65, 397, 522, 893, 953
HpaII	CCGG	2 cut(s)	285, 518
HphI	GGTGA	3 cut(s)	274, 289, 572
Hpy166II	GTNNAC	2 cut(s)	659, 1092
Hpy188I	TCNGA	4 cut(s)	428, 571, 706, 773
Hpy188III	TCNNGA	6 cut(s)	34, 201, 449, 815, 917, 950
Hpy8I	GTNNAC	2 cut(s)	659, 1092
HpyAV	CCTTC	5 cut(s)	128, 711, 811, 812, 874
HpyCH4III	ACNGT	1 cut(s)	940
HpyCH4IV	ACGT	1 cut(s)	1088
HpyCH4V	TGCA	8 cut(s)	165, 187, 435, 443, 659, 668, 785, 965
HpyF10VI	GCNNNNNNNGC	1 cut(s)	665
HpyF3I	CTNAG	2 cut(s)	585, 628
HpySE526I	ACGT	1 cut(s)	1088
Hsp92II	CATG	4 cut(s)	265, 668, 680, 800
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
LmnI	GCTCC	2 cut(s)	474, 490
Lsp1109I	GCAGC	1 cut(s)	949
LweI	GCATC	2 cut(s)	229, 256
MaeI	CTAG	2 cut(s)	180, 494
MaeII	ACGT	1 cut(s)	1088
MaeIII	GTNAC	3 cut(s)	409, 787, 1112
MalI	GATC	6 cut(s)	78, 281, 714, 730, 813, 836
MboI	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
MboII	GAAGA	8 cut(s)	52, 86, 290, 719, 722, 767, 1003, 1007
MflI	RGATCY	2 cut(s)	76, 728
MhlI	GDGCHC	1 cut(s)	661
MluCI	AATT	8 cut(s)	14, 172, 367, 429, 498, 576, 765, 824
MlyI	GAGTC	3 cut(s)	391, 902, 947
MnlI	CCTC	5 cut(s)	30, 393, 898, 1112, 1115
Mph1103I	ATGCAT	1 cut(s)	670
MseI	TTAA	4 cut(s)	24, 191, 308, 393
MslI	CAYNNNNRTG	1 cut(s)	325
MspI	CCGG	2 cut(s)	285, 518
MspR9I	CCNGG	6 cut(s)	303, 518, 519, 619, 726, 1033
MvaI	CCWGG	4 cut(s)	303, 619, 726, 1033
MwoI	GCNNNNNNNGC	1 cut(s)	665
NciI	CCSGG	2 cut(s)	518, 519
NdeII	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
NlaIII	CATG	4 cut(s)	265, 668, 680, 800
NlaIV	GGNNCC	3 cut(s)	476, 616, 730
NmuCI	GTSAC	3 cut(s)	409, 787, 1112
NsiI	ATGCAT	1 cut(s)	670
NspI	RCATGY	1 cut(s)	800
PfeI	GAWTC	2 cut(s)	65, 522
PfoI	TCCNGGA	1 cut(s)	1031
PkrI	GCNGC	1 cut(s)	964
PleI	GAGTC	3 cut(s)	391, 901, 947
PpsI	GAGTC	3 cut(s)	391, 901, 947
Ppu21I	YACGTR	1 cut(s)	1089
Psp6I	CCWGG	4 cut(s)	301, 617, 724, 1031
PspGI	CCWGG	4 cut(s)	301, 617, 724, 1031
PspN4I	GGNNCC	3 cut(s)	476, 616, 730
PspPI	GGNCC	1 cut(s)	515
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	2 cut(s)	76, 728
RsaI	GTAC	2 cut(s)	540, 1091
RsaNI	GTAC	2 cut(s)	539, 1090
RseI	CAYNNNNRTG	1 cut(s)	325
SaqAI	TTAA	4 cut(s)	24, 191, 308, 393
SatI	GCNGC	1 cut(s)	963
Sau3AI	GATC	6 cut(s)	76, 279, 712, 728, 811, 834
Sau96I	GGNCC	1 cut(s)	515
SchI	GAGTC	3 cut(s)	391, 902, 947
ScrFI	CCNGG	6 cut(s)	303, 518, 519, 619, 726, 1033
SduI	GDGCHC	1 cut(s)	661
SetI	ASST	8 cut(s)	135, 495, 620, 629, 634, 823, 964, 1091
SfaNI	GCATC	2 cut(s)	229, 256
SfcI	CTRYAG	1 cut(s)	957
SmaI	CCCGGG	1 cut(s)	519
SmiMI	CAYNNNNRTG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
SnaBI	TACGTA	1 cut(s)	1089
Sse9I	AATT	8 cut(s)	14, 172, 367, 429, 498, 576, 765, 824
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	2 cut(s)	180, 494
StyD4I	CCNGG	6 cut(s)	301, 516, 517, 617, 724, 1031
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	940
TaiI	ACGT	1 cut(s)	1091
TasI	AATT	8 cut(s)	14, 172, 367, 429, 498, 576, 765, 824
TfiI	GAWTC	2 cut(s)	65, 522
Tru1I	TTAA	4 cut(s)	24, 191, 308, 393
Tru9I	TTAA	4 cut(s)	24, 191, 308, 393
TscAI	CASTG	5 cut(s)	532, 616, 796, 837, 997
TseFI	GTSAC	3 cut(s)	409, 787, 1112
TseI	GCWGC	1 cut(s)	962
Tsp45I	GTSAC	3 cut(s)	409, 787, 1112
TspMI	CCCGGG	1 cut(s)	517
TspRI	CASTG	5 cut(s)	532, 616, 796, 837, 997
VneI	GTGCAC	1 cut(s)	657
XapI	RAATTY	3 cut(s)	14, 172, 429
XceI	RCATGY	1 cut(s)	800
XmaI	CCCGGG	1 cut(s)	517
XspI	CTAG	2 cut(s)	180, 494
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.