Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Forward (+)

33505855 .. 33507329

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G023700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAAATGGTGAATTCTGTTGGTAATTGTATCCAAAGGAAGAATGTTGAGTGGTTGGATCTGCAATCTTTCGAAGGTGTGATCGATAATGTACTTTCATCGCTTCCTGTCAAGTGCCTTCTAAATGTTAAGGCTGTTTCTAAATTCTTGCGTGATTTGATTCGTAGTCAAGCTTTCATTAGATTGCACTTAAGTCGGTCAAGAGAAAATGCCTTGTATATATTTTTCCCTTTTATGCCAATTAACAGAAACATATACATCATTGATGCTGATGCGGTAGTCACTGAAACAGTCACTCTTCCTACTGATGAGAATCTATCAACTCTTAGTATGGTTTGTTCCTATAATGGTTTGATTTGTCTCACCAATTTTCCCGTGACTCTTTACTCATATATTGGTTTACTTCCTAAATGTAGCCCATCGGAAGAGGACCTAGGCATTGGTGTTGCCTTTGGCCCAGAGATCAGTGAGTATAAAGTATTTCGGTTTTTCCGTTCCAAATCCAATTCTGAAATAGTCCTCCCTGACCCAGAGGTTGTGCCATATTGGTTTTTGCCTCCCACATCCAGACCTGAAAGAGTCCTCCCTCCAGAGTGTGAGATATATTCATCCAGAACTGGAACCTGGAGTTGCATAGGTCCTGTTCAGCATCGTCCTATGGGTGCACACCACGTATTTGTTAATGGAAAAGTTTATTGGTTTATTCCCTCAGAAGAAAATTATGATATCCCTGGATCCATTCTTTCAGTTGATATGGAGGAACATTTTGAAGTTGTCGGGCTTCCAGATACACTCACAGAACTCTCCTTCTTAATTGATTTTGAAGGCTGCTTATCAGTAGTCGCGGTTTTTGATAAAGTTGAGCCTGTGGTTATTTGGATTTTAAAGAATGAAAATGAATATGTTTGGGAGAAGAAATGCAGTGCTGGTATTCCCTACAAAGGAATGATGGAGGAACTTCACTCTGTAGCTGCTAGAGAAAGTGACATTTTTTTCATAACTGCACATGATTATATTATCTTAGACACAGATGACAGTTCCTGGGAACTTGTTGAGTTTGAAGAGTTTGAACCTAATGCTCACGCTGTTTTTCCATACACAGAAAGCCTCCTCCCTTGTAGTGGACGGTTTGCAGGGGAGGTGAACAATCAAAGAGCAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

387

Amino Acids

43.93

Weight (kDa)

4.66

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	92 - 313	3.9e-10	F-box associated beta propeller domain
FBA_1	PF07734	193 - 340	1.7e-08	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	845
AciI	CCGC	2 cut(s)	275, 845
AclWI	GGATC	3 cut(s)	66, 729, 742
AcsI	RAATTY	2 cut(s)	13, 143
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	2 cut(s)	941, 1121
AflII	CTTAAG	1 cut(s)	190
AgsI	TTSAA	4 cut(s)	770, 824, 1061, 1070
AjnI	CCWGG	3 cut(s)	623, 730, 1040
AjuI	GAANNNNNNNTTGG	2 cut(s)	679, 711
AluBI	AGCT	2 cut(s)	173, 971
AluI	AGCT	2 cut(s)	173, 971
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	1 cut(s)	365
Alw44I	GTGCAC	1 cut(s)	663
AlwI	GGATC	3 cut(s)	66, 729, 742
AlwNI	CAGNNNCTG	1 cut(s)	1041
AoxI	GGCC	1 cut(s)	454
ApaLI	GTGCAC	1 cut(s)	663
ApeKI	GCWGC	3 cut(s)	828, 971, 1157
ApoI	RAATTY	2 cut(s)	13, 143
AspA2I	CCTAGG	1 cut(s)	433
AspS9I	GGNCC	3 cut(s)	430, 455, 638
AsuHPI	GGTGA	3 cut(s)	22, 355, 1153
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	2 cut(s)	430, 638
AvrII	CCTAGG	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	667
BamHI	GGATCC	1 cut(s)	734
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	2 cut(s)	815, 958
BccI	CCATC	2 cut(s)	427, 943
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	3 cut(s)	625, 732, 1042
BciVI	GTATCC	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	2 cut(s)	434, 975
BfmI	CTRYAG	1 cut(s)	966
BfrI	CTTAAG	1 cut(s)	190
BfuI	GTATCC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	829, 972, 1158
BlnI	CCTAGG	1 cut(s)	433
BlsI	GCNGC	3 cut(s)	830, 973, 1159
Bme1390I	CCNGG	3 cut(s)	625, 732, 1042
Bme18I	GGWCC	2 cut(s)	430, 638
BmgT120I	GGNCC	3 cut(s)	430, 455, 638
BmiI	GGNNCC	2 cut(s)	622, 736
BmrFI	CCNGG	3 cut(s)	625, 732, 1042
BmsI	GCATC	3 cut(s)	256, 262, 658
BpmI	CTGGAG	2 cut(s)	573, 646
Bpu14I	TTCGAA	1 cut(s)	72
Bsa29I	ATCGAT	1 cut(s)	84
BsaAI	YACGTR	1 cut(s)	673
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	3 cut(s)	433, 730, 1041
Bsc4I	CCNNNNNNNGG	2 cut(s)	941, 1121
Bse1I	ACTGG	1 cut(s)	622
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	3 cut(s)	625, 732, 1042
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	3 cut(s)	433, 730, 1041
BseGI	GGATG	2 cut(s)	563, 608
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	941, 1121
BseMII	CTCAG	1 cut(s)	723
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	1 cut(s)	1100
BseSI	GKGCMC	1 cut(s)	667
BseXI	GCAGC	2 cut(s)	815, 958
BsgI	GTGCAG	1 cut(s)	987
Bsh1236I	CGCG	1 cut(s)	845
BshFI	GGCC	1 cut(s)	456
BshVI	ATCGAT	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	667
BslI	CCNNNNNNNGG	2 cut(s)	941, 1121
BsmAI	GTCTC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	456
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	4 cut(s)	58, 81, 462, 734
BspACI	CCGC	2 cut(s)	275, 845
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	1 cut(s)	722
BspDI	ATCGAT	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	845
BspLI	GGNNCC	2 cut(s)	622, 736
BspPI	GGATC	3 cut(s)	66, 729, 742
BspT104I	TTCGAA	1 cut(s)	72
BspTI	CTTAAG	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	3 cut(s)	433, 730, 1041
BssMI	GATC	4 cut(s)	58, 81, 462, 734
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	3 cut(s)	625, 732, 1042
Bst4CI	ACNGT	3 cut(s)	292, 1037, 1128
Bst6I	CTCTTC	3 cut(s)	303, 420, 1056
BstAFI	CTTAAG	1 cut(s)	190
BstBAI	YACGTR	1 cut(s)	673
BstBI	TTCGAA	1 cut(s)	72
BstDEI	CTNAG	3 cut(s)	326, 709, 1021
BstF5I	GGATG	2 cut(s)	563, 608
BstFNI	CGCG	1 cut(s)	845
BstKTI	GATC	4 cut(s)	61, 84, 465, 737
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	4 cut(s)	58, 81, 462, 734
BstNI	CCWGG	3 cut(s)	625, 732, 1042
BstSCI	CCNGG	3 cut(s)	623, 730, 1040
BstSFI	CTRYAG	1 cut(s)	966
BstSLI	GKGCMC	1 cut(s)	667
BstUI	CGCG	1 cut(s)	845
BstV1I	GCAGC	2 cut(s)	815, 958
BstX2I	RGATCY	2 cut(s)	58, 734
BstYI	RGATCY	2 cut(s)	58, 734
Bsu15I	ATCGAT	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	456
BsuTUI	ATCGAT	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	563, 608
BtsI	GCAGTG	1 cut(s)	928
BtsIMutI	CAGTG	3 cut(s)	282, 472, 928
CaiI	CAGNNNCTG	1 cut(s)	1041
Cfr13I	GGNCC	3 cut(s)	430, 455, 638
ClaI	ATCGAT	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	1 cut(s)	1007
CviJI	RGCY	9 cut(s)	134, 173, 417, 456, 781, 828, 865, 971, 1107
CviKI_1	RGCY	9 cut(s)	134, 173, 417, 456, 781, 828, 865, 971, 1107
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	3 cut(s)	326, 709, 1021
DpnI	GATC	4 cut(s)	60, 83, 464, 736
DpnII	GATC	4 cut(s)	58, 81, 462, 734
DraI	TTTAAA	1 cut(s)	885
Eam1104I	CTCTTC	3 cut(s)	303, 420, 1056
EarI	CTCTTC	3 cut(s)	303, 420, 1056
Eco130I	CCWWGG	1 cut(s)	433
Eco32I	GATATC	1 cut(s)	727
Eco47I	GGWCC	2 cut(s)	430, 638
EcoO109I	RGGNCCY	2 cut(s)	430, 638
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	3 cut(s)	623, 730, 1040
EcoRV	GATATC	1 cut(s)	727
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	1 cut(s)	1010
FatI	CATG	1 cut(s)	1006
Fnu4HI	GCNGC	3 cut(s)	829, 972, 1158
FokI	GGATG	2 cut(s)	550, 595
Fsp4HI	GCNGC	3 cut(s)	829, 972, 1158
FspBI	CTAG	2 cut(s)	434, 975
GluI	GCNGC	3 cut(s)	829, 972, 1158
GsuI	CTGGAG	2 cut(s)	573, 646
HaeIII	GGCC	1 cut(s)	456
Hin1II	CATG	1 cut(s)	1010
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	4 cut(s)	160, 313, 379, 579
HphI	GGTGA	3 cut(s)	22, 355, 1153
Hpy166II	GTNNAC	4 cut(s)	401, 665, 1124, 1144
Hpy188I	TCNGA	3 cut(s)	424, 511, 712
Hpy188III	TCNNGA	5 cut(s)	201, 567, 590, 612, 785
Hpy8I	GTNNAC	4 cut(s)	401, 665, 1124, 1144
HpyAV	CCTTC	4 cut(s)	68, 128, 817, 818
HpyCH4III	ACNGT	3 cut(s)	292, 1037, 1128
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	7 cut(s)	64, 187, 633, 665, 921, 1004, 1133
HpyF3I	CTNAG	3 cut(s)	326, 709, 1021
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	1 cut(s)	1010
Kzo9I	GATC	4 cut(s)	58, 81, 462, 734
Lsp1109I	GCAGC	2 cut(s)	815, 958
LweI	GCATC	3 cut(s)	256, 262, 658
MaeI	CTAG	2 cut(s)	434, 975
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	4 cut(s)	280, 292, 376, 983
MalI	GATC	4 cut(s)	60, 83, 464, 736
MboI	GATC	4 cut(s)	58, 81, 462, 734
MboII	GAAGA	6 cut(s)	52, 290, 437, 725, 925, 1073
MflI	RGATCY	2 cut(s)	58, 734
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	8 cut(s)	13, 25, 143, 240, 367, 505, 718, 813
MlyI	GAGTC	2 cut(s)	373, 588
MmeI	TCCRAC	1 cut(s)	36
MseI	TTAA	6 cut(s)	129, 191, 243, 681, 812, 884
MspCI	CTTAAG	1 cut(s)	190
MspR9I	CCNGG	3 cut(s)	625, 732, 1042
MvaI	CCWGG	3 cut(s)	625, 732, 1042
MvnI	CGCG	1 cut(s)	845
NdeII	GATC	4 cut(s)	58, 81, 462, 734
NlaIII	CATG	1 cut(s)	1010
NlaIV	GGNNCC	2 cut(s)	622, 736
NmuCI	GTSAC	4 cut(s)	280, 292, 376, 983
NspV	TTCGAA	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	490
PfeI	GAWTC	2 cut(s)	160, 313
PkrI	GCNGC	3 cut(s)	830, 973, 1159
PleI	GAGTC	2 cut(s)	373, 587
PpsI	GAGTC	2 cut(s)	373, 587
Ppu21I	YACGTR	1 cut(s)	673
PpuMI	RGGWCCY	2 cut(s)	430, 638
Psp5II	RGGWCCY	2 cut(s)	430, 638
Psp6I	CCWGG	3 cut(s)	623, 730, 1040
PspGI	CCWGG	3 cut(s)	623, 730, 1040
PspN4I	GGNNCC	2 cut(s)	622, 736
PspPI	GGNCC	3 cut(s)	430, 455, 638
PspPPI	RGGWCCY	2 cut(s)	430, 638
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
PstNI	CAGNNNCTG	1 cut(s)	1041
PsuI	RGATCY	2 cut(s)	58, 734
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SaqAI	TTAA	6 cut(s)	129, 191, 243, 681, 812, 884
SatI	GCNGC	3 cut(s)	829, 972, 1158
Sau3AI	GATC	4 cut(s)	58, 81, 462, 734
Sau96I	GGNCC	3 cut(s)	430, 455, 638
SchI	GAGTC	2 cut(s)	373, 588
ScrFI	CCNGG	3 cut(s)	625, 732, 1042
SduI	GDGCHC	1 cut(s)	667
SfaNI	GCATC	3 cut(s)	256, 262, 658
SfcI	CTRYAG	1 cut(s)	966
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	2 cut(s)	430, 638
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	8 cut(s)	13, 25, 143, 240, 367, 505, 718, 813
SsiI	CCGC	2 cut(s)	275, 845
SspMI	CTAG	2 cut(s)	434, 975
StyD4I	CCNGG	3 cut(s)	623, 730, 1040
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	3 cut(s)	292, 1037, 1128
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	2 cut(s)	72, 84
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	8 cut(s)	13, 25, 143, 240, 367, 505, 718, 813
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	160, 313
Tru1I	TTAA	6 cut(s)	129, 191, 243, 681, 812, 884
Tru9I	TTAA	6 cut(s)	129, 191, 243, 681, 812, 884
TscAI	CASTG	3 cut(s)	289, 472, 928
TseFI	GTSAC	4 cut(s)	280, 292, 376, 983
TseI	GCWGC	3 cut(s)	828, 971, 1157
Tsp45I	GTSAC	4 cut(s)	280, 292, 376, 983
TspDTI	ATGAA	6 cut(s)	87, 166, 597, 906, 912, 985
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	3 cut(s)	289, 472, 928
Vha464I	CTTAAG	1 cut(s)	190
VneI	GTGCAC	1 cut(s)	663
VpaK11BI	GGWCC	2 cut(s)	430, 638
XapI	RAATTY	2 cut(s)	13, 143
XmaJI	CCTAGG	1 cut(s)	433
XspI	CTAG	2 cut(s)	434, 975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.