Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Forward (+)

32042304 .. 32044312

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG291100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGAAATGGTGAATTTTGTTGGTAATTGTATCCAAAGGAAGAATGTTGAGTGGTTGGATCTGGAATCTTTCGAAGGTGTGATCGATAATGTACTTTCATCGCTCCCTGTCAAGTGCCTTCTAAATGTTAAGGCTGTTTCTAAATTCTTGCGTGATTTGATTCGTAGTCAAGCTTTCATTAGATTGCATTTAAGTCGGTCAAGAGAAAATGCCTTGTATATATTTTTCCCTTTTATGCCAATTAACAGAAACATATACATCATTGATGCTGATGCGGTAGTCACTGAAACAGTCACTCTTCCTACTGATGAGAATCTATCCACTCTTAGTATGGTTTGTTCCTATAATGGTTTGATTTGTCTCACCAATTTTCCCGTGACTCTTTACTCATACAGTTCTCAAGGAGTGGCAGTGGCAGACTTGGAAATCCTGATCTGCAATCCCGCCACTCATGAAGTTGGTTTACTTCCAAAATGTAGCCCATCGGAAGAGGACCTAGGCATTGGTGTTGCCTTTGGCCCAGAGATCAGTGAGTATAAAGTATTTCGGTTTTTCCGTTCCAAATCCAATTCTGAAATAGTCCTCCCAGAGGTTGTGCCATATTGGTTTTTGCTTCCCACATCCAGACCTGAAACAGTCCTCCCTCCAGAGTGTGAGATATATTCATCCAGAACTGGAACCTGGAGTTGCATAGGTCCTGTTCAGCATCGTCCTATGGGTGCACATCACGTATTTGTTAACGGAAAAGTTTATTGGTTTATTCCCTCAGAAGAAAATTATGATATCCCTGGATCCATTCTATCAGTTGATATGGAGGTACATTTTGAAGTTGTCGGGCTTCCAGATACACTCACAGAACTCTCCTTCTTAATTGATTTTGAAGGCTGCTTATCAGTAGTTGCGGTTTTTGATAAAGATGAGCCTGTGGTTATTTGGATTTTAAAGAATGAAACTGAATATGTTTGGGAGAAGAAATGCAGTGCTGGTATTCCCTACAAAGGAATGATGGAGGAACTTCACTCTGTAGCTGCTAGAGAAAGTGACATTTTTTTCATAACTGCACACGATTATATTATCTTAGACACGGATGACAGTTCCTGGGAACTTGTTGAGTTTGAAGAGTTTGAACCTAATGCTCACGCTGTTTTTCCATACACAGAAAGCCTCCTCCCTTGTAGTGGACGGTTTGCAGGGGAGGTGAACAATCAAAGAGCAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

406

Amino Acids

45.85

Weight (kDa)

4.59

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	92 - 332	2e-15	F-box associated beta propeller domain
FBA_1	PF07734	94 - 359	6.5e-10	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	275, 444, 902
AclWI	GGATC	3 cut(s)	66, 786, 799
AcsI	RAATTY	2 cut(s)	13, 143
AfaI	GTAC	2 cut(s)	93, 819
AfiI	CCNNNNNNNGG	3 cut(s)	589, 998, 1178
AgsI	TTSAA	4 cut(s)	827, 881, 1118, 1127
AjnI	CCWGG	3 cut(s)	680, 787, 1097
AjuI	GAANNNNNNNTTGG	2 cut(s)	736, 768
AluBI	AGCT	2 cut(s)	173, 1028
AluI	AGCT	2 cut(s)	173, 1028
Alw21I	GWGCWC	1 cut(s)	724
Alw26I	GTCTC	1 cut(s)	365
Alw44I	GTGCAC	1 cut(s)	720
AlwI	GGATC	3 cut(s)	66, 786, 799
AlwNI	CAGNNNCTG	1 cut(s)	1098
AoxI	GGCC	1 cut(s)	517
ApaLI	GTGCAC	1 cut(s)	720
ApeKI	GCWGC	3 cut(s)	885, 1028, 1214
ApoI	RAATTY	2 cut(s)	13, 143
AspA2I	CCTAGG	1 cut(s)	496
AspS9I	GGNCC	3 cut(s)	493, 518, 695
AsuHPI	GGTGA	3 cut(s)	22, 355, 1210
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	2 cut(s)	493, 695
AvrII	CCTAGG	1 cut(s)	496
BaeGI	GKGCMC	1 cut(s)	724
BamHI	GGATCC	1 cut(s)	791
BarI	GAAGNNNNNNTAC	2 cut(s)	447, 479
Bbv12I	GWGCWC	1 cut(s)	724
BbvI	GCAGC	2 cut(s)	872, 1015
BccI	CCATC	2 cut(s)	490, 1000
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	3 cut(s)	682, 789, 1099
BciVI	GTATCC	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	2 cut(s)	497, 1032
BfmI	CTRYAG	1 cut(s)	1023
BfuI	GTATCC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	886, 1029, 1215
BlnI	CCTAGG	1 cut(s)	496
BlsI	GCNGC	3 cut(s)	887, 1030, 1216
Bme1390I	CCNGG	3 cut(s)	682, 789, 1099
Bme18I	GGWCC	2 cut(s)	493, 695
BmgT120I	GGNCC	3 cut(s)	493, 518, 695
BmiI	GGNNCC	2 cut(s)	679, 793
BmrFI	CCNGG	3 cut(s)	682, 789, 1099
BmsI	GCATC	3 cut(s)	256, 262, 715
BpmI	CTGGAG	2 cut(s)	630, 703
Bpu14I	TTCGAA	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	384
Bsa29I	ATCGAT	1 cut(s)	84
BsaAI	YACGTR	1 cut(s)	730
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	3 cut(s)	496, 787, 1098
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	3 cut(s)	589, 998, 1178
Bse1I	ACTGG	1 cut(s)	679
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	3 cut(s)	682, 789, 1099
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	3 cut(s)	496, 787, 1098
BseGI	GGATG	3 cut(s)	620, 665, 1093
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	3 cut(s)	589, 998, 1178
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	1 cut(s)	679
BseRI	GAGGAG	1 cut(s)	1157
BseSI	GKGCMC	1 cut(s)	724
BseXI	GCAGC	2 cut(s)	872, 1015
BsgI	GTGCAG	1 cut(s)	1044
BshFI	GGCC	1 cut(s)	519
BshVI	ATCGAT	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	724
BslI	CCNNNNNNNGG	3 cut(s)	589, 998, 1178
BsmAI	GTCTC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	519
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp143I	GATC	5 cut(s)	58, 81, 432, 525, 791
BspACI	CCGC	3 cut(s)	275, 444, 902
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	1 cut(s)	779
BspDI	ATCGAT	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	679, 793
BspPI	GGATC	3 cut(s)	66, 786, 799
BspT104I	TTCGAA	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	679
BssECI	CCNNGG	3 cut(s)	496, 787, 1098
BssMI	GATC	5 cut(s)	58, 81, 432, 525, 791
BssT1I	CCWWGG	1 cut(s)	496
Bst2UI	CCWGG	3 cut(s)	682, 789, 1099
Bst4CI	ACNGT	5 cut(s)	292, 395, 637, 1094, 1185
Bst6I	CTCTTC	3 cut(s)	303, 483, 1113
BstBAI	YACGTR	1 cut(s)	730
BstBI	TTCGAA	1 cut(s)	72
BstDEI	CTNAG	3 cut(s)	326, 766, 1078
BstENI	CCTNNNNNAGG	1 cut(s)	587
BstF5I	GGATG	3 cut(s)	620, 665, 1093
BstKTI	GATC	5 cut(s)	61, 84, 435, 528, 794
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	5 cut(s)	58, 81, 432, 525, 791
BstNI	CCWGG	3 cut(s)	682, 789, 1099
BstSCI	CCNGG	3 cut(s)	680, 787, 1097
BstSFI	CTRYAG	1 cut(s)	1023
BstSLI	GKGCMC	1 cut(s)	724
BstV1I	GCAGC	2 cut(s)	872, 1015
BstX2I	RGATCY	2 cut(s)	58, 791
BstYI	RGATCY	2 cut(s)	58, 791
Bsu15I	ATCGAT	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	519
BsuTUI	ATCGAT	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	3 cut(s)	620, 665, 1093
BtsI	GCAGTG	2 cut(s)	417, 985
BtsIMutI	CAGTG	4 cut(s)	282, 417, 535, 985
CaiI	CAGNNNCTG	1 cut(s)	1098
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	3 cut(s)	493, 518, 695
ClaI	ATCGAT	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	92, 818
CviAII	CATG	1 cut(s)	452
CviJI	RGCY	9 cut(s)	134, 173, 480, 519, 838, 885, 922, 1028, 1164
CviKI_1	RGCY	9 cut(s)	134, 173, 480, 519, 838, 885, 922, 1028, 1164
CviQI	GTAC	2 cut(s)	92, 818
DdeI	CTNAG	3 cut(s)	326, 766, 1078
DpnI	GATC	5 cut(s)	60, 83, 434, 527, 793
DpnII	GATC	5 cut(s)	58, 81, 432, 525, 791
DraI	TTTAAA	1 cut(s)	942
Eam1104I	CTCTTC	3 cut(s)	303, 483, 1113
EarI	CTCTTC	3 cut(s)	303, 483, 1113
Eco130I	CCWWGG	1 cut(s)	496
Eco32I	GATATC	1 cut(s)	784
Eco47I	GGWCC	2 cut(s)	493, 695
EcoNI	CCTNNNNNAGG	1 cut(s)	587
EcoO109I	RGGNCCY	2 cut(s)	493, 695
EcoRII	CCWGG	3 cut(s)	680, 787, 1097
EcoRV	GATATC	1 cut(s)	784
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	1 cut(s)	455
FatI	CATG	1 cut(s)	451
FauI	CCCGC	1 cut(s)	451
Fnu4HI	GCNGC	3 cut(s)	886, 1029, 1215
FokI	GGATG	3 cut(s)	607, 652, 1100
Fsp4HI	GCNGC	3 cut(s)	886, 1029, 1215
FspBI	CTAG	2 cut(s)	497, 1032
GluI	GCNGC	3 cut(s)	886, 1029, 1215
GsuI	CTGGAG	2 cut(s)	630, 703
HaeIII	GGCC	1 cut(s)	519
Hin1II	CATG	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	4 cut(s)	65, 160, 313, 379
HpaI	GTTAAC	1 cut(s)	739
HphI	GGTGA	3 cut(s)	22, 355, 1210
Hpy166II	GTNNAC	5 cut(s)	464, 722, 739, 1181, 1201
Hpy188I	TCNGA	3 cut(s)	487, 574, 769
Hpy188III	TCNNGA	8 cut(s)	62, 201, 430, 452, 624, 647, 669, 842
Hpy8I	GTNNAC	5 cut(s)	464, 722, 739, 1181, 1201
HpyAV	CCTTC	4 cut(s)	68, 128, 874, 875
HpyCH4III	ACNGT	5 cut(s)	292, 395, 637, 1094, 1185
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	7 cut(s)	187, 438, 690, 722, 978, 1061, 1190
HpyF3I	CTNAG	3 cut(s)	326, 766, 1078
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	1 cut(s)	455
KspAI	GTTAAC	1 cut(s)	739
Kzo9I	GATC	5 cut(s)	58, 81, 432, 525, 791
LmnI	GCTCC	1 cut(s)	108
Lsp1109I	GCAGC	2 cut(s)	872, 1015
LweI	GCATC	3 cut(s)	256, 262, 715
MaeI	CTAG	2 cut(s)	497, 1032
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	4 cut(s)	280, 292, 376, 1040
MalI	GATC	5 cut(s)	60, 83, 434, 527, 793
MboI	GATC	5 cut(s)	58, 81, 432, 525, 791
MboII	GAAGA	6 cut(s)	52, 290, 500, 782, 982, 1130
MflI	RGATCY	2 cut(s)	58, 791
MhlI	GDGCHC	1 cut(s)	724
MluCI	AATT	8 cut(s)	13, 25, 143, 240, 367, 568, 775, 870
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	36
MseI	TTAA	6 cut(s)	129, 191, 243, 738, 869, 941
MspR9I	CCNGG	3 cut(s)	682, 789, 1099
MvaI	CCWGG	3 cut(s)	682, 789, 1099
NdeII	GATC	5 cut(s)	58, 81, 432, 525, 791
NlaIII	CATG	1 cut(s)	455
NlaIV	GGNNCC	2 cut(s)	679, 793
NmuCI	GTSAC	4 cut(s)	280, 292, 376, 1040
NspV	TTCGAA	1 cut(s)	72
PagI	TCATGA	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	1 cut(s)	553
PfeI	GAWTC	3 cut(s)	65, 160, 313
PkrI	GCNGC	3 cut(s)	887, 1030, 1216
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Ppu21I	YACGTR	1 cut(s)	730
PpuMI	RGGWCCY	2 cut(s)	493, 695
Psp5II	RGGWCCY	2 cut(s)	493, 695
Psp6I	CCWGG	3 cut(s)	680, 787, 1097
PspGI	CCWGG	3 cut(s)	680, 787, 1097
PspN4I	GGNNCC	2 cut(s)	679, 793
PspPI	GGNCC	3 cut(s)	493, 518, 695
PspPPI	RGGWCCY	2 cut(s)	493, 695
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
PstNI	CAGNNNCTG	1 cut(s)	1098
PsuI	RGATCY	2 cut(s)	58, 791
RsaI	GTAC	2 cut(s)	93, 819
RsaNI	GTAC	2 cut(s)	92, 818
SaqAI	TTAA	6 cut(s)	129, 191, 243, 738, 869, 941
SatI	GCNGC	3 cut(s)	886, 1029, 1215
Sau3AI	GATC	5 cut(s)	58, 81, 432, 525, 791
Sau96I	GGNCC	3 cut(s)	493, 518, 695
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	3 cut(s)	682, 789, 1099
SduI	GDGCHC	1 cut(s)	724
SfaNI	GCATC	3 cut(s)	256, 262, 715
SfcI	CTRYAG	1 cut(s)	1023
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	2 cut(s)	493, 695
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
Sse9I	AATT	8 cut(s)	13, 25, 143, 240, 367, 568, 775, 870
SsiI	CCGC	3 cut(s)	275, 444, 902
SspMI	CTAG	2 cut(s)	497, 1032
StyD4I	CCNGG	3 cut(s)	680, 787, 1097
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	5 cut(s)	292, 395, 637, 1094, 1185
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	2 cut(s)	72, 84
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	8 cut(s)	13, 25, 143, 240, 367, 568, 775, 870
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	3 cut(s)	65, 160, 313
Tru1I	TTAA	6 cut(s)	129, 191, 243, 738, 869, 941
Tru9I	TTAA	6 cut(s)	129, 191, 243, 738, 869, 941
TscAI	CASTG	4 cut(s)	289, 417, 535, 985
TseFI	GTSAC	4 cut(s)	280, 292, 376, 1040
TseI	GCWGC	3 cut(s)	885, 1028, 1214
Tsp45I	GTSAC	4 cut(s)	280, 292, 376, 1040
TspDTI	ATGAA	6 cut(s)	87, 166, 468, 654, 963, 1042
TspGWI	ACGGA	3 cut(s)	545, 756, 1100
TspRI	CASTG	4 cut(s)	289, 417, 535, 985
VneI	GTGCAC	1 cut(s)	720
VpaK11BI	GGWCC	2 cut(s)	493, 695
XagI	CCTNNNNNAGG	1 cut(s)	587
XapI	RAATTY	2 cut(s)	13, 143
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XmaJI	CCTAGG	1 cut(s)	496
XspI	CTAG	2 cut(s)	497, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.