Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Forward (+)

33463438 .. 33468286

Gene Structure 4849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G023670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGATGCTAAAAGAAGTCTGTATTTCATGGATGCTGACGGGGTGATCACCGGAACAATCAGTCTTACTGGTTTAAAAAATATACCATCTCTATGTATGATTGCTTCCTACAATGGGTTGATATGTTTCACTAATTATCCTTGGTTTCCTCATTCATTTAAGACTCGAGCAGTAGTGACAGGCTTGGAAATCCGAATTTGCAATCCTGCAACTCGTGAAGTTTGGCTACTTCCTAATGGGAGCCAAATGAAACAGGAGCTAGGAATTGGGGTTGCCTTTGGCCCGGGAATCAGTGAGTATAGGGTACTTCGGTTTTTCTGTTCCAAATCCAAATCTGATGTAATTCACCCTGAGTGTGAGATATTTCAATCAAGCACCGGAACCTGGAGAAGCTTAGGTTTTGTTCAGCATTGTCCTATGGGTGCACATCATGTATTTGTTCATGGAAAAGTTTTTTGGTTTATTCCTTCAGAAGAAGATCATAATATCCCTGGATCCATTCTTTCAGTTGGTTTGGACGAAGATTTTAGAATTATCAGACTTCCAGTTGCGGTCACTGAACATGCCTTCTTGGTTGATCTTGAAGGTCAATTATCACTGATCGTTGTATTTGATGATGATGACACTATGGTTATATGGATTTTGAAGGATGAAAATGAGTCCATTTGGGAGGAGAAATGTCGTGATGGTATTCCCTATGAAACTGTGGAGTGTCTTGACTCTGTAGCTGCAAGAAAAACTGACATTTTTTTCATCACTGAAGAACGCTATTTCATCTTCAGTATGATAAAAATGTCCTGGAAAGAAACTCATTTCAAAGAACTATTTGAACAACATTCTCCTGTTGTTTTTACGTACACAGAAAGCCTCCTCCCTTGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

294

Amino Acids

33.61

Weight (kDa)

5.2

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	29 - 234	5.1e-18	F-box associated beta propeller domain
FBA_1	PF07734	64 - 291	4e-14	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	551
AclWI	GGATC	2 cut(s)	489, 502
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	3 cut(s)	453, 763, 780
AfaI	GTAC	2 cut(s)	306, 857
AfiI	CCNNNNNNNGG	2 cut(s)	114, 384
AgsI	TTSAA	5 cut(s)	368, 584, 646, 817, 830
AjnI	CCWGG	3 cut(s)	383, 490, 797
AjuI	GAANNNNNNNTTGG	2 cut(s)	439, 471
AluBI	AGCT	3 cut(s)	259, 393, 728
AluI	AGCT	3 cut(s)	259, 393, 728
Alw21I	GWGCWC	1 cut(s)	427
Alw44I	GTGCAC	1 cut(s)	423
AlwI	GGATC	2 cut(s)	489, 502
Ama87I	CYCGRG	2 cut(s)	165, 283
AoxI	GGCC	1 cut(s)	280
ApaLI	GTGCAC	1 cut(s)	423
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	281
AsuC2I	CCSGG	2 cut(s)	284, 285
AsuHPI	GGTGA	3 cut(s)	40, 55, 338
AvaI	CYCGRG	2 cut(s)	165, 283
BaeGI	GKGCMC	1 cut(s)	427
BaeI	ACNNNNGTAYC	2 cut(s)	296, 329
BamHI	GGATCC	1 cut(s)	494
BarI	GAAGNNNNNNTAC	4 cut(s)	88, 120, 210, 242
BauI	CACGAG	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	1 cut(s)	715
BccI	CCATC	2 cut(s)	94, 680
BciT130I	CCWGG	3 cut(s)	385, 492, 799
BclI	TGATCA	1 cut(s)	45
BcnI	CCSGG	2 cut(s)	284, 285
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	723
BisI	GCNGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	730
Bme1390I	CCNGG	5 cut(s)	284, 285, 385, 492, 799
BmeT110I	CYCGRG	2 cut(s)	165, 283
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	3 cut(s)	242, 382, 496
BmrFI	CCNGG	5 cut(s)	284, 285, 385, 492, 799
BmsI	GCATC	1 cut(s)	22
BpmI	CTGGAG	1 cut(s)	406
Bpu10I	CCTNAGC	1 cut(s)	394
BpuMI	CCSGG	2 cut(s)	284, 285
BsaAI	YACGTR	1 cut(s)	855
BsaJI	CCNNGG	3 cut(s)	140, 283, 490
BsaWI	WCCGGW	2 cut(s)	50, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 384
Bse1I	ACTGG	2 cut(s)	73, 545
BseBI	CCWGG	3 cut(s)	385, 492, 799
BseDI	CCNNGG	3 cut(s)	140, 283, 490
BseGI	GGATG	3 cut(s)	10, 37, 655
BseLI	CCNNNNNNNGG	2 cut(s)	114, 384
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	2 cut(s)	73, 545
BseRI	GAGGAG	2 cut(s)	686, 860
BseSI	GKGCMC	1 cut(s)	427
BseXI	GCAGC	1 cut(s)	715
BshFI	GGCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	427
BsiHKCI	CYCGRG	2 cut(s)	165, 283
BsiSI	CCGG	3 cut(s)	51, 284, 378
BslI	CCNNNNNNNGG	2 cut(s)	114, 384
BsnI	GGCC	1 cut(s)	282
BsoBI	CYCGRG	2 cut(s)	165, 283
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	5 cut(s)	45, 478, 494, 577, 600
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	3 cut(s)	242, 382, 496
BspPI	GGATC	2 cut(s)	489, 502
BsrI	ACTGG	2 cut(s)	73, 545
BssECI	CCNNGG	3 cut(s)	140, 283, 490
BssMI	GATC	5 cut(s)	45, 478, 494, 577, 600
BssSI	CACGAG	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	140
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	3 cut(s)	385, 492, 799
Bst4CI	ACNGT	1 cut(s)	706
BstBAI	YACGTR	1 cut(s)	855
BstDEI	CTNAG	2 cut(s)	351, 394
BstF5I	GGATG	3 cut(s)	10, 37, 655
BstKTI	GATC	5 cut(s)	48, 481, 497, 580, 603
BstMBI	GATC	5 cut(s)	45, 478, 494, 577, 600
BstNI	CCWGG	3 cut(s)	385, 492, 799
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	5 cut(s)	282, 283, 383, 490, 797
BstSFI	CTRYAG	1 cut(s)	723
BstSLI	GKGCMC	1 cut(s)	427
BstSNI	TACGTA	1 cut(s)	855
BstV1I	GCAGC	1 cut(s)	715
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BsuRI	GGCC	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	10, 37, 655
BtsIMutI	CAGTG	5 cut(s)	298, 555, 596, 756, 880
Cfr13I	GGNCC	1 cut(s)	281
Cfr9I	CCCGGG	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	305, 856
CviAII	CATG	4 cut(s)	28, 431, 443, 563
CviJI	RGCY	8 cut(s)	183, 226, 243, 259, 282, 393, 728, 867
CviKI_1	RGCY	8 cut(s)	183, 226, 243, 259, 282, 393, 728, 867
CviQI	GTAC	2 cut(s)	305, 856
DdeI	CTNAG	2 cut(s)	351, 394
DpnI	GATC	5 cut(s)	47, 480, 496, 579, 602
DpnII	GATC	5 cut(s)	45, 478, 494, 577, 600
DraI	TTTAAA	1 cut(s)	75
Eco105I	TACGTA	1 cut(s)	855
Eco130I	CCWWGG	1 cut(s)	140
Eco57I	CTGAAG	3 cut(s)	453, 763, 780
Eco88I	CYCGRG	2 cut(s)	165, 283
EcoRII	CCWGG	3 cut(s)	383, 490, 797
EcoT14I	CCWWGG	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	4 cut(s)	31, 434, 446, 566
FatI	CATG	4 cut(s)	27, 430, 442, 562
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	729
FokI	GGATG	3 cut(s)	17, 44, 662
Fsp4HI	GCNGC	1 cut(s)	729
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	406
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	3 cut(s)	51, 284, 378
Hin1II	CATG	4 cut(s)	31, 434, 446, 566
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	4 cut(s)	163, 288, 659, 719
HpaII	CCGG	3 cut(s)	51, 284, 378
HphI	GGTGA	3 cut(s)	40, 55, 338
Hpy166II	GTNNAC	2 cut(s)	425, 858
Hpy188I	TCNGA	4 cut(s)	194, 337, 472, 539
Hpy188III	TCNNGA	4 cut(s)	215, 581, 683, 716
Hpy8I	GTNNAC	2 cut(s)	425, 858
HpyAV	CCTTC	4 cut(s)	477, 577, 578, 640
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4IV	ACGT	1 cut(s)	854
HpyCH4V	TGCA	4 cut(s)	201, 209, 425, 731
HpyF3I	CTNAG	2 cut(s)	351, 394
HpySE526I	ACGT	1 cut(s)	854
Hsp92II	CATG	4 cut(s)	31, 434, 446, 566
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	5 cut(s)	45, 478, 494, 577, 600
LmnI	GCTCC	2 cut(s)	240, 256
Lsp1109I	GCAGC	1 cut(s)	715
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	854
MaeIII	GTNAC	3 cut(s)	175, 553, 878
MalI	GATC	5 cut(s)	47, 480, 496, 579, 602
MboI	GATC	5 cut(s)	45, 478, 494, 577, 600
MboII	GAAGA	5 cut(s)	485, 488, 533, 769, 773
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	6 cut(s)	133, 195, 264, 342, 531, 590
MlyI	GAGTC	3 cut(s)	157, 668, 713
MnlI	CCTC	4 cut(s)	159, 664, 878, 881
MseI	TTAA	2 cut(s)	74, 159
MslI	CAYNNNNRTG	1 cut(s)	91
MspI	CCGG	3 cut(s)	51, 284, 378
MspR9I	CCNGG	5 cut(s)	284, 285, 385, 492, 799
MvaI	CCWGG	3 cut(s)	385, 492, 799
NciI	CCSGG	2 cut(s)	284, 285
NdeII	GATC	5 cut(s)	45, 478, 494, 577, 600
NlaIII	CATG	4 cut(s)	31, 434, 446, 566
NlaIV	GGNNCC	3 cut(s)	242, 382, 496
NmuCI	GTSAC	3 cut(s)	175, 553, 878
NspI	RCATGY	1 cut(s)	566
PaeR7I	CTCGAG	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	288
PfoI	TCCNGGA	1 cut(s)	797
PkrI	GCNGC	1 cut(s)	730
PleI	GAGTC	3 cut(s)	157, 667, 713
PpsI	GAGTC	3 cut(s)	157, 667, 713
Ppu21I	YACGTR	1 cut(s)	855
Psp6I	CCWGG	3 cut(s)	383, 490, 797
PspGI	CCWGG	3 cut(s)	383, 490, 797
PspN4I	GGNNCC	3 cut(s)	242, 382, 496
PspPI	GGNCC	1 cut(s)	281
PspXI	VCTCGAGB	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	2 cut(s)	306, 857
RsaNI	GTAC	2 cut(s)	305, 856
RseI	CAYNNNNRTG	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	74, 159
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	5 cut(s)	45, 478, 494, 577, 600
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	3 cut(s)	157, 668, 713
ScrFI	CCNGG	5 cut(s)	284, 285, 385, 492, 799
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	7 cut(s)	261, 386, 395, 400, 589, 730, 857
SfaNI	GCATC	1 cut(s)	22
SfcI	CTRYAG	1 cut(s)	723
Sfr274I	CTCGAG	1 cut(s)	165
SlaI	CTCGAG	1 cut(s)	165
SmaI	CCCGGG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
SnaBI	TACGTA	1 cut(s)	855
Sse9I	AATT	6 cut(s)	133, 195, 264, 342, 531, 590
SsiI	CCGC	1 cut(s)	551
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	5 cut(s)	282, 283, 383, 490, 797
StyI	CCWWGG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	706
TaiI	ACGT	1 cut(s)	857
TaqI	TCGA	1 cut(s)	166
TasI	AATT	6 cut(s)	133, 195, 264, 342, 531, 590
TfiI	GAWTC	1 cut(s)	288
Tru1I	TTAA	2 cut(s)	74, 159
Tru9I	TTAA	2 cut(s)	74, 159
TscAI	CASTG	4 cut(s)	298, 562, 603, 763
TseFI	GTSAC	3 cut(s)	175, 553, 878
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	3 cut(s)	175, 553, 878
TspDTI	ATGAA	8 cut(s)	16, 144, 263, 431, 666, 714, 742, 763
TspMI	CCCGGG	1 cut(s)	283
TspRI	CASTG	4 cut(s)	298, 562, 603, 763
VneI	GTGCAC	1 cut(s)	423
XapI	RAATTY	1 cut(s)	195
XceI	RCATGY	1 cut(s)	566
XhoI	CTCGAG	1 cut(s)	165
XmaI	CCCGGG	1 cut(s)	283
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.