Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002820

Physical Location & Seq

Genomic Coordinates Reverse (-)

61859065 .. 61864186

Gene Structure 5122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00043360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAAACAGGATGAATTTTTTGTTAATCTTATCCAGAGGAAGAGTACTGGTTGGTTCAATGTGGAATCTGCTGAAGATCTGCTTGGCAATATTCTTTCAAGGCTTCCAGTTAAGCTCCTTCTAACTATCAAGGTCGTTGCTAAACTTTGGCATAGATTGATTTGCAGTCCAAATTTCACTAGACTGCATTTAAGCAAATCAAGAGAAAAGTCCATCTATATACTTTATCCTTTTATGGATGCTAAAAGAAGTCTGTATTTCATGGATGCTGATGGGGTGATCACCGGAACAATCAGTCTTCCTGGTTTAAAAAATATACCATCTCTATGTATGATTGCTTCCTACAATGGGCTGATATGTTTCACTAATTATCCTTGGTTTCCTCATTCATTTAAGACTAGAGCAGTAGTGACAGGCTTGGAAATCCGAATTTGCAATCCTGCAACTCGTGAAGTTTGGCTACTTCCTAATGGGAGCCAAATGAAACAGGAGCTAGGAATTGGGGTTGCCTTTGGCCCGGGAATCAGTGAGTATAGGGTACTTCGGTTTTTCTGTTCCAAATCCAAATCTGATGTAATTCACCCTCAGTGTGAGATATTTTCATCAAGCACTAGAACCTGGAGAAGCTTAGGTTTTGTTCAGCATTGTCCTATGGGTGCACATCATGTATTTGCTCATGGAAAAGTTTTTTGGTTTATTCCTTCAGAAGATCATAATATCCCTGGATCCATTCTTTCAGTTGGTTTGGATGAAGATTTTAGAATTATCAGACTTCCAGTTGAGGTCACTGAACATGCCTTCTTGGTTGATCTTGATGGTCAATTATCACTGATCGTTGTATTTGATGATGATGACACTATGGTTATATGGATTTTGAAGGATGAAAATGAGTCCATTTGGGAGGAGAAATGTCGTGATGGTATTCCCTATGAAACTGTGGAGTGTCTTGACTCTGTAGCTGTAAGAAAAAATGACATTGTTTTCATCACTGAAGAACGCTATTTCATCTTCAGTATGATAAAAATGTCCTGGAAAGAAATTCATTTCAAAGAACTATTTGAACAACATTCTCCTGTTGTTTTTACGTACACAGAAAGCCTCCTCCCTTGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

371

Amino Acids

42.74

Weight (kDa)

6.12

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	107 - 316	2.5e-17	F-box associated beta propeller domain
FBA_1	PF07734	142 - 369	2.6e-13	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20620
fragaria_vesca	FvH4_3g21861
malus_domestica	MD11G1226600.v1.1
prunus_persica	Prupe.4G203700_v2.0.a1 Prupe.4G203700_v2.0.a1
pyrus_communis	pycom11g19930
rosa_chinensis	RchiOBHm_Chr5g0037641 RchiOBHm_Chr5g0037671
rosa_laevigata	RLG00000033792 RLG00000033798 RLG00000033800
rosa_multiflora	Rmu_sc0002482.1_g000039 Rmu_sc0006558.1_g000010 Rmu_sc0006558.1_g000022 Rmu_sc0021476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043270 Rroxscaffold_1G00043290 Rroxscaffold_1G00043310 Rroxscaffold_1G00043360
rosa_rugosa	Rorug05G0166000 Rorug05G0166100 Rorug05G0166100 Rorug05G0166200 Rorug05G0166300 Rorug05G0166300 Rorug05G0166300
rosa_samantha	Rh5AG255400 Rh5AG255600 Rh5BG257300 Rh5BG257700 Rh5CG290600 Rh5CG291100 Rh5DG265700 Rh5DG266400 Rh5DG267100 Rh5DG267200
rosa_wichuraiana	Rw5G023670 Rw5G023700 Rw5G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	720, 733
AcsI	RAATTY	4 cut(s)	14, 172, 429, 1038
AcuI	CTGAAG	4 cut(s)	93, 687, 994, 1011
AfaI	GTAC	3 cut(s)	46, 540, 1088
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	5 cut(s)	58, 99, 877, 1048, 1061
AjnI	CCWGG	4 cut(s)	301, 617, 721, 1028
AjuI	GAANNNNNNNTTGG	4 cut(s)	66, 98, 673, 705
AluBI	AGCT	4 cut(s)	115, 493, 627, 959
AluI	AGCT	4 cut(s)	115, 493, 627, 959
Alw21I	GWGCWC	1 cut(s)	661
Alw44I	GTGCAC	1 cut(s)	657
AlwI	GGATC	2 cut(s)	720, 733
Ama87I	CYCGRG	1 cut(s)	517
AoxI	GGCC	1 cut(s)	514
ApaLI	GTGCAC	1 cut(s)	657
ApoI	RAATTY	4 cut(s)	14, 172, 429, 1038
AspS9I	GGNCC	1 cut(s)	515
AsuC2I	CCSGG	2 cut(s)	518, 519
AsuHPI	GGTGA	3 cut(s)	274, 289, 572
AvaI	CYCGRG	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	661
BaeI	ACNNNNGTAYC	2 cut(s)	530, 563
BamHI	GGATCC	1 cut(s)	725
BarI	GAAGNNNNNNTAC	4 cut(s)	322, 354, 444, 476
BauI	CACGAG	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	661
BccI	CCATC	5 cut(s)	221, 266, 328, 809, 911
BciT130I	CCWGG	4 cut(s)	303, 619, 723, 1030
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	2 cut(s)	518, 519
BfaI	CTAG	4 cut(s)	180, 399, 494, 612
BfmI	CTRYAG	1 cut(s)	954
BglII	AGATCT	1 cut(s)	76
BmcAI	AGTACT	1 cut(s)	46
Bme1390I	CCNGG	6 cut(s)	303, 518, 519, 619, 723, 1030
BmeT110I	CYCGRG	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	2 cut(s)	476, 727
BmrFI	CCNGG	6 cut(s)	303, 518, 519, 619, 723, 1030
BmsI	GCATC	2 cut(s)	229, 256
BpiI	GAAGAC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	640
Bpu10I	CCTNAGC	1 cut(s)	628
BpuMI	CCSGG	2 cut(s)	518, 519
BsaAI	YACGTR	1 cut(s)	1086
BsaJI	CCNNGG	3 cut(s)	374, 517, 721
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse1I	ACTGG	3 cut(s)	52, 107, 776
BseBI	CCWGG	4 cut(s)	303, 619, 723, 1030
BseDI	CCNNGG	3 cut(s)	374, 517, 721
BseGI	GGATG	5 cut(s)	16, 244, 271, 754, 886
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	599
BseNI	ACTGG	3 cut(s)	52, 107, 776
BseRI	GAGGAG	2 cut(s)	917, 1091
BseSI	GKGCMC	1 cut(s)	661
BshFI	GGCC	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	661
BsiHKCI	CYCGRG	1 cut(s)	517
BsiSI	CCGG	2 cut(s)	285, 518
BslI	CCNNNNNNNGG	1 cut(s)	348
BsnI	GGCC	1 cut(s)	516
BsoBI	CYCGRG	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp143I	GATC	6 cut(s)	76, 279, 709, 725, 808, 831
BspANI	GGCC	1 cut(s)	516
BspCNI	CTCAG	1 cut(s)	598
BspLI	GGNNCC	2 cut(s)	476, 727
BspPI	GGATC	2 cut(s)	720, 733
BsrI	ACTGG	3 cut(s)	52, 107, 776
BssECI	CCNNGG	3 cut(s)	374, 517, 721
BssMI	GATC	6 cut(s)	76, 279, 709, 725, 808, 831
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	4 cut(s)	303, 619, 723, 1030
Bst4CI	ACNGT	1 cut(s)	937
Bst6I	CTCTTC	1 cut(s)	35
BstBAI	YACGTR	1 cut(s)	1086
BstDEI	CTNAG	2 cut(s)	585, 628
BstF5I	GGATG	5 cut(s)	16, 244, 271, 754, 886
BstKTI	GATC	6 cut(s)	79, 282, 712, 728, 811, 834
BstMBI	GATC	6 cut(s)	76, 279, 709, 725, 808, 831
BstNI	CCWGG	4 cut(s)	303, 619, 723, 1030
BstNSI	RCATGY	1 cut(s)	797
BstSCI	CCNGG	6 cut(s)	301, 516, 517, 617, 721, 1028
BstSFI	CTRYAG	1 cut(s)	954
BstSLI	GKGCMC	1 cut(s)	661
BstSNI	TACGTA	1 cut(s)	1086
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	2 cut(s)	76, 725
BstYI	RGATCY	2 cut(s)	76, 725
BsuRI	GGCC	1 cut(s)	516
BtsCI	GGATG	5 cut(s)	16, 244, 271, 754, 886
BtsIMutI	CAGTG	6 cut(s)	532, 593, 786, 827, 987, 1111
Cfr13I	GGNCC	1 cut(s)	515
Cfr9I	CCCGGG	1 cut(s)	517
Csp6I	GTAC	3 cut(s)	45, 539, 1087
CviAII	CATG	4 cut(s)	262, 665, 677, 794
CviQI	GTAC	3 cut(s)	45, 539, 1087
DdeI	CTNAG	2 cut(s)	585, 628
DpnI	GATC	6 cut(s)	78, 281, 711, 727, 810, 833
DpnII	GATC	6 cut(s)	76, 279, 709, 725, 808, 831
DraI	TTTAAA	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco105I	TACGTA	1 cut(s)	1086
Eco130I	CCWWGG	1 cut(s)	374
Eco57I	CTGAAG	4 cut(s)	93, 687, 994, 1011
Eco88I	CYCGRG	1 cut(s)	517
EcoRII	CCWGG	4 cut(s)	301, 617, 721, 1028
EcoT14I	CCWWGG	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	4 cut(s)	265, 668, 680, 797
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FatI	CATG	4 cut(s)	261, 664, 676, 793
FbaI	TGATCA	1 cut(s)	279
FokI	GGATG	5 cut(s)	23, 251, 278, 761, 893
FspBI	CTAG	4 cut(s)	180, 399, 494, 612
GsuI	CTGGAG	1 cut(s)	640
HaeIII	GGCC	1 cut(s)	516
HapII	CCGG	2 cut(s)	285, 518
Hin1II	CATG	4 cut(s)	265, 668, 680, 797
HindIII	AAGCTT	1 cut(s)	625
HinfI	GANTC	4 cut(s)	65, 522, 890, 950
HpaII	CCGG	2 cut(s)	285, 518
HphI	GGTGA	3 cut(s)	274, 289, 572
Hpy166II	GTNNAC	2 cut(s)	659, 1089
Hpy188I	TCNGA	4 cut(s)	428, 571, 706, 770
Hpy188III	TCNNGA	6 cut(s)	34, 201, 449, 812, 914, 947
Hpy8I	GTNNAC	2 cut(s)	659, 1089
HpyAV	CCTTC	4 cut(s)	128, 711, 808, 871
HpyCH4III	ACNGT	1 cut(s)	937
HpyCH4IV	ACGT	1 cut(s)	1085
HpyCH4V	TGCA	5 cut(s)	165, 187, 435, 443, 659
HpyF3I	CTNAG	2 cut(s)	585, 628
HpySE526I	ACGT	1 cut(s)	1085
Hsp92II	CATG	4 cut(s)	265, 668, 680, 797
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	6 cut(s)	76, 279, 709, 725, 808, 831
LmnI	GCTCC	3 cut(s)	120, 474, 490
LweI	GCATC	2 cut(s)	229, 256
MaeI	CTAG	4 cut(s)	180, 399, 494, 612
MaeII	ACGT	1 cut(s)	1085
MaeIII	GTNAC	3 cut(s)	409, 784, 1109
MalI	GATC	6 cut(s)	78, 281, 711, 727, 810, 833
MboI	GATC	6 cut(s)	76, 279, 709, 725, 808, 831
MboII	GAAGA	7 cut(s)	52, 86, 290, 719, 764, 1000, 1004
MflI	RGATCY	2 cut(s)	76, 725
MhlI	GDGCHC	1 cut(s)	661
MluCI	AATT	9 cut(s)	14, 172, 367, 429, 498, 576, 762, 821, 1038
MlyI	GAGTC	2 cut(s)	899, 944
MnlI	CCTC	7 cut(s)	30, 393, 594, 775, 895, 1109, 1112
MseI	TTAA	5 cut(s)	24, 111, 191, 308, 393
MslI	CAYNNNNRTG	1 cut(s)	325
MspI	CCGG	2 cut(s)	285, 518
MspR9I	CCNGG	6 cut(s)	303, 518, 519, 619, 723, 1030
MvaI	CCWGG	4 cut(s)	303, 619, 723, 1030
NciI	CCSGG	2 cut(s)	518, 519
NdeII	GATC	6 cut(s)	76, 279, 709, 725, 808, 831
NlaIII	CATG	4 cut(s)	265, 668, 680, 797
NlaIV	GGNNCC	2 cut(s)	476, 727
NmuCI	GTSAC	3 cut(s)	409, 784, 1109
NspI	RCATGY	1 cut(s)	797
PfeI	GAWTC	2 cut(s)	65, 522
PfoI	TCCNGGA	1 cut(s)	1028
PleI	GAGTC	2 cut(s)	898, 944
PpsI	GAGTC	2 cut(s)	898, 944
Ppu21I	YACGTR	1 cut(s)	1086
Psp6I	CCWGG	4 cut(s)	301, 617, 721, 1028
PspGI	CCWGG	4 cut(s)	301, 617, 721, 1028
PspN4I	GGNNCC	2 cut(s)	476, 727
PspPI	GGNCC	1 cut(s)	515
PsuI	RGATCY	2 cut(s)	76, 725
RsaI	GTAC	3 cut(s)	46, 540, 1088
RsaNI	GTAC	3 cut(s)	45, 539, 1087
RseI	CAYNNNNRTG	1 cut(s)	325
SaqAI	TTAA	5 cut(s)	24, 111, 191, 308, 393
Sau3AI	GATC	6 cut(s)	76, 279, 709, 725, 808, 831
Sau96I	GGNCC	1 cut(s)	515
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	2 cut(s)	899, 944
ScrFI	CCNGG	6 cut(s)	303, 518, 519, 619, 723, 1030
SduI	GDGCHC	1 cut(s)	661
SetI	ASST	9 cut(s)	117, 135, 495, 620, 629, 634, 786, 961, 1088
SfaNI	GCATC	2 cut(s)	229, 256
SfcI	CTRYAG	1 cut(s)	954
SmaI	CCCGGG	1 cut(s)	519
SmiMI	CAYNNNNRTG	1 cut(s)	325
SnaBI	TACGTA	1 cut(s)	1086
Sse9I	AATT	9 cut(s)	14, 172, 367, 429, 498, 576, 762, 821, 1038
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	4 cut(s)	180, 399, 494, 612
StyD4I	CCNGG	6 cut(s)	301, 516, 517, 617, 721, 1028
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	937
TaiI	ACGT	1 cut(s)	1088
TasI	AATT	9 cut(s)	14, 172, 367, 429, 498, 576, 762, 821, 1038
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	65, 522
Tru1I	TTAA	5 cut(s)	24, 111, 191, 308, 393
Tru9I	TTAA	5 cut(s)	24, 111, 191, 308, 393
TscAI	CASTG	5 cut(s)	532, 593, 793, 834, 994
TseFI	GTSAC	3 cut(s)	409, 784, 1109
Tsp45I	GTSAC	3 cut(s)	409, 784, 1109
TspMI	CCCGGG	1 cut(s)	517
TspRI	CASTG	5 cut(s)	532, 593, 793, 834, 994
VneI	GTGCAC	1 cut(s)	657
XapI	RAATTY	4 cut(s)	14, 172, 429, 1038
XceI	RCATGY	1 cut(s)	797
XmaI	CCCGGG	1 cut(s)	517
XspI	CTAG	4 cut(s)	180, 399, 494, 612
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.