Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014275

Physical Location & Seq

Genomic Coordinates Reverse (-)

1967638 .. 1969287

Gene Structure 1650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCCTCCTTTGATGGGCCAAAGTTCAAGATGACTGATGGCTCCTATGTTCAGACTAAGACCATTGATGTTGGATCATCAACAGATATCTCTCCATACCTTTCACTTATAAGAGAAGATTCTATCTTGAATGGAAACCGAGCGGTGATCTTCGATGTGTACTGGGATGTGGGGTTTCCTGAAACTGAAACCAAAACCAAAACGTCAGGGTGGAGTCTGTCATCGGTGAAGCTGAGCACTAGAAACTTATGTCTCTTCCTTCGACTTCCTAAACCTTTTCATGACAATCTCAAGGATCTGTACCGTTTCTTTGCTTCCAAGTTTGTCACTTTTGTTGGAGTGCAGATCGAGGAAGACCTGGACTTGCTTAGAGAAAACCACGGTCTCGTGATAAGAAACGCGATTAACGTTGGGAAATTGGCTGCGGAAGCTCGTGGAACTCTGGTGCTTGAGTTTCTTGGGACAAGAGAATTAGCGCACAGAGTATTGTGGTCTGATTTGGGCCAGCTGGATTCGATTGAGGCCAAATGGGAGAAGGCAGGTCCTGAAGAACAACTTGAGGCTGCAGCCATTGAAGGGTGGCTCATCGTCAATGTTTGGGATCAATTGTCCGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008296 GO:0008297 GO:0008310 GO:0008408 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031325 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0098588 GO:0098805 GO:0140097 GO:1901360 GO:2000628 GO:2000630

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

206

Amino Acids

23.22

Weight (kDa)

4.92

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11770 AT5G06450
fragaria_vesca	FvH4_3g21850
prunus_persica	Prupe.4G202600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037631
rosa_laevigata	RLG00000033791 RLG00000033797 RLG00000034136
rosa_roxburghii	Rroxscaffold_1G00043320 Rroxscaffold_1G00043380
rosa_rugosa	Rorug05G0166200
rosa_samantha	Rh5BG291800 Rh5CG290500 Rh5DG265600 Rh5DG266100 Rh5DG301600
rosa_wichuraiana	Rw5G023660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	530
AccBSI	CCGCTC	1 cut(s)	143
AccII	CGCG	1 cut(s)	401
AciI	CCGC	2 cut(s)	143, 425
AclI	AACGTT	1 cut(s)	408
AclWI	GGATC	3 cut(s)	82, 303, 609
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	2 cut(s)	161, 302
AfiI	CCNNNNNNNGG	2 cut(s)	15, 576
AgsI	TTSAA	3 cut(s)	28, 130, 575
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	3 cut(s)	232, 431, 508
AluI	AGCT	3 cut(s)	232, 431, 508
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	2 cut(s)	257, 389
AlwI	GGATC	3 cut(s)	82, 303, 609
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	4 cut(s)	3, 17, 502, 522
ApeKI	GCWGC	3 cut(s)	422, 563, 566
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	3 cut(s)	17, 502, 542
AsuHPI	GGTGA	2 cut(s)	157, 238
AvaII	GGWCC	1 cut(s)	542
BauI	CACGAG	2 cut(s)	386, 432
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	239
BbvI	GCAGC	3 cut(s)	409, 550, 578
BccI	CCATC	2 cut(s)	8, 32
BciT130I	CCWGG	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	257, 389
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	564
BfuAI	ACCTGC	1 cut(s)	530
BisI	GCNGC	3 cut(s)	423, 564, 567
BlpI	GCTNAGC	1 cut(s)	233
BlsI	GCNGC	3 cut(s)	424, 565, 568
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	3 cut(s)	17, 502, 542
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	359
BmrI	ACTGGG	1 cut(s)	172
BmuI	ACTGGG	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	360
Bpu1102I	GCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	3 cut(s)	275, 470, 578
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 576
Bse1I	ACTGG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	15, 576
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	167
BseXI	GCAGC	3 cut(s)	409, 550, 578
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	401
BshFI	GGCC	4 cut(s)	5, 19, 504, 524
BsiHKAI	GWGCWC	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	2 cut(s)	15, 576
BsmAI	GTCTC	2 cut(s)	257, 389
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	4 cut(s)	5, 19, 504, 524
Bso31I	GGTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	5 cut(s)	74, 147, 295, 345, 601
Bsp1720I	GCTNAGC	1 cut(s)	233
BspACI	CCGC	2 cut(s)	143, 425
BspANI	GGCC	4 cut(s)	5, 19, 504, 524
BspCNI	CTCAG	1 cut(s)	225
BspFNI	CGCG	1 cut(s)	401
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	530
BspPI	GGATC	3 cut(s)	82, 303, 609
BspTNI	GGTCTC	1 cut(s)	389
BsrBI	CCGCTC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	5 cut(s)	74, 147, 295, 345, 601
BssSI	CACGAG	2 cut(s)	386, 432
Bst2BI	CACGAG	2 cut(s)	386, 432
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	2 cut(s)	305, 383
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	3 cut(s)	57, 233, 368
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	5 cut(s)	77, 150, 298, 348, 604
BstMAI	GTCTC	2 cut(s)	257, 389
BstMBI	GATC	5 cut(s)	74, 147, 295, 345, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	564
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	3 cut(s)	409, 550, 578
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	4 cut(s)	5, 19, 504, 524
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	172
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	1 cut(s)	506
CaiI	CAGNNNCTG	1 cut(s)	545
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	1 cut(s)	478
Cfr13I	GGNCC	3 cut(s)	17, 502, 542
Csp6I	GTAC	2 cut(s)	160, 301
CviAII	CATG	1 cut(s)	281
CviQI	GTAC	2 cut(s)	160, 301
DdeI	CTNAG	3 cut(s)	57, 233, 368
DpnI	GATC	5 cut(s)	76, 149, 297, 347, 603
DpnII	GATC	5 cut(s)	74, 147, 295, 345, 601
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	389
Eco32I	GATATC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	1 cut(s)	567
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	357
EcoRV	GATATC	1 cut(s)	88
FaeI	CATG	1 cut(s)	284
FaiI	YATR	5 cut(s)	48, 97, 110, 250, 282
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	423, 564, 567
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	3 cut(s)	423, 564, 567
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	3 cut(s)	423, 564, 567
HaeIII	GGCC	4 cut(s)	5, 19, 504, 524
HhaI	GCGC	1 cut(s)	478
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HinfI	GANTC	3 cut(s)	119, 214, 512
HphI	GGTGA	2 cut(s)	157, 238
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	3 cut(s)	54, 496, 613
Hpy188III	TCNNGA	6 cut(s)	28, 127, 179, 281, 388, 545
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	3 cut(s)	269, 529, 569
HpyCH4III	ACNGT	2 cut(s)	305, 383
HpyCH4IV	ACGT	2 cut(s)	203, 408
HpyCH4V	TGCA	2 cut(s)	343, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	3 cut(s)	57, 233, 368
HpySE526I	ACGT	2 cut(s)	203, 408
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	1 cut(s)	476
Kzo9I	GATC	5 cut(s)	74, 147, 295, 345, 601
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	3 cut(s)	409, 550, 578
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	203, 408
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	5 cut(s)	76, 149, 297, 347, 603
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	5 cut(s)	74, 147, 295, 345, 601
MboII	GAAGA	5 cut(s)	128, 142, 247, 365, 560
MfeI	CAATTG	1 cut(s)	605
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	3 cut(s)	416, 470, 605
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	2 cut(s)	52, 316
MnlI	CCTC	4 cut(s)	16, 343, 514, 553
MseI	TTAA	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	508
MspR9I	CCNGG	1 cut(s)	359
MunI	CAATTG	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	359
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	428
NdeII	GATC	5 cut(s)	74, 147, 295, 345, 601
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	325
PagI	TCATGA	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	119, 512
PkrI	GCNGC	3 cut(s)	424, 565, 568
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
PpuMI	RGGWCCY	1 cut(s)	542
PsiI	TTATAA	1 cut(s)	110
Psp1406I	AACGTT	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	3 cut(s)	17, 502, 542
PspPPI	RGGWCCY	1 cut(s)	542
PstI	CTGCAG	1 cut(s)	568
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	508
RsaI	GTAC	2 cut(s)	161, 302
RsaNI	GTAC	2 cut(s)	160, 301
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	3 cut(s)	423, 564, 567
Sau3AI	GATC	5 cut(s)	74, 147, 295, 345, 601
Sau96I	GGNCC	3 cut(s)	17, 502, 542
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	9 cut(s)	102, 206, 234, 277, 360, 411, 433, 510, 544
SfcI	CTRYAG	1 cut(s)	564
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	3 cut(s)	290, 449, 557
SmoI	CTYRAG	3 cut(s)	290, 449, 557
Sse9I	AATT	3 cut(s)	416, 470, 605
SsiI	CCGC	2 cut(s)	143, 425
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	305, 383
TaiI	ACGT	2 cut(s)	206, 411
TaqI	TCGA	4 cut(s)	153, 262, 348, 515
TasI	AATT	3 cut(s)	416, 470, 605
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	119, 512
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	3 cut(s)	422, 563, 566
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	542
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.