Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014275

Physical Location & Seq

Genomic Coordinates Reverse (-)

32147176 .. 32147526

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG266100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAGCGACAGCACCAAAGTAGTCACTGAGATCGTCTGCGAACACGGTGCAGTGCACCTCTGCCTGTACCTCATCACCCAGAAAATCCGTGAAGAGAAGGACATGGTTGTAGGGTTTGACAGGGAATGTTCTCTGGTAGACACGGAAGACGGCCGAGTCGAACCTCGGGCGGTCCTTATCAAACTCTTCTCCTGCGTCGGGTGTGTCCTTATAAGATTGAACCATAAGTCAGGCCATGCATGTGTGCCCTTGGCTGCTCAACTTCTTCATGATGAAGGACATTGTTTTTGTTGGAGTTCATGTCAACGAGGACGTGAGGATGTTGAAGGAGAATTATGGGGTTGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008296 GO:0008297 GO:0008310 GO:0008408 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031325 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0098588 GO:0098805 GO:0140097 GO:1901360 GO:2000628 GO:2000630

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

116

Amino Acids

12.92

Weight (kDa)

5.43

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11770 AT5G06450
fragaria_vesca	FvH4_3g21850
prunus_persica	Prupe.4G202600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037631
rosa_laevigata	RLG00000033791 RLG00000033797 RLG00000034136
rosa_roxburghii	Rroxscaffold_1G00043320 Rroxscaffold_1G00043380
rosa_rugosa	Rorug05G0166200
rosa_samantha	Rh5BG291800 Rh5CG290500 Rh5DG265600 Rh5DG266100 Rh5DG301600
rosa_wichuraiana	Rw5G023660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	212
AasI	GACNNNNNNGTC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	151
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	220, 326
AjiI	CACGTC	1 cut(s)	314
Alw21I	GWGCWC	1 cut(s)	57
Alw44I	GTGCAC	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	2 cut(s)	151, 232
ApaLI	GTGCAC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	172
BaeGI	GKGCMC	2 cut(s)	57, 249
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	241
BceAI	ACGGC	1 cut(s)	166
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	165
BmgBI	CACGTC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	164, 249
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	164, 249
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	18
BseSI	GKGCMC	2 cut(s)	57, 249
BseX3I	CGGCCG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	153, 234
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	198
BsnI	GGCC	2 cut(s)	153, 234
BsoBI	CYCGRG	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	57, 249
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	2 cut(s)	153, 234
BspCNI	CTCAG	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	164, 249
BssMI	GATC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	2 cut(s)	87, 191
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	325
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstMCI	CGRYCG	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	243
BstSLI	GKGCMC	2 cut(s)	57, 249
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	153
BstZI	CGGCCG	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	153, 234
BtrI	CACGTC	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	325
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	24, 57
CciI	TCATGA	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	5 cut(s)	103, 236, 240, 269, 300
CviJI	RGCY	3 cut(s)	153, 234, 254
CviKI_1	RGCY	3 cut(s)	153, 234, 254
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	151
EagI	CGGCCG	1 cut(s)	151
Eam1104I	CTCTTC	2 cut(s)	87, 191
EarI	CTCTTC	2 cut(s)	87, 191
EclXI	CGGCCG	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	172
Eco52I	CGGCCG	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	249
EcoT22I	ATGCAT	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	5 cut(s)	106, 239, 243, 272, 303
FaiI	YATR	8 cut(s)	104, 212, 225, 237, 241, 270, 301, 337
FatI	CATG	5 cut(s)	102, 235, 239, 268, 299
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	153, 234
HgaI	GACGC	1 cut(s)	184
Hin1II	CATG	5 cut(s)	106, 239, 243, 272, 303
HincII	GTYRAC	1 cut(s)	305
HindII	GTYRAC	1 cut(s)	305
HinfI	GANTC	1 cut(s)	156
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	3 cut(s)	55, 139, 305
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	3 cut(s)	55, 139, 305
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	3 cut(s)	91, 269, 320
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	3 cut(s)	50, 55, 239
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	5 cut(s)	106, 239, 243, 272, 303
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	6 cut(s)	77, 92, 106, 119, 205, 216
Lsp1109I	GCAGC	1 cut(s)	241
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	4 cut(s)	104, 158, 178, 257
MhlI	GDGCHC	2 cut(s)	57, 249
MluCI	AATT	1 cut(s)	332
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	5 cut(s)	68, 80, 174, 302, 310
Mph1103I	ATGCAT	1 cut(s)	241
MslI	CAYNNNNRTG	1 cut(s)	240
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	5 cut(s)	106, 239, 243, 272, 303
NmeAIII	GCCGAG	1 cut(s)	179
NmuCI	GTSAC	1 cut(s)	22
NsiI	ATGCAT	1 cut(s)	241
NspI	RCATGY	1 cut(s)	243
PagI	TCATGA	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PsiI	TTATAA	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	240
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	165
SduI	GDGCHC	2 cut(s)	57, 249
SetI	ASST	4 cut(s)	60, 72, 166, 316
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	1 cut(s)	332
SsiI	CCGC	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	47
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	159
TasI	AATT	1 cut(s)	332
TscAI	CASTG	2 cut(s)	31, 57
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	3 cut(s)	257, 288, 288
TspGWI	ACGGA	2 cut(s)	77, 158
TspRI	CASTG	2 cut(s)	31, 57
VneI	GTGCAC	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	172
XceI	RCATGY	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	138
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.