Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007298

Physical Location & Seq

Genomic Coordinates Forward (+)

3776177 .. 3777751

Gene Structure 1575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCGGAAGAGCAAGCAGCGACGGCAATGGAAACATCGGCGGTGGAGAAGCAGCCAGAGACGACGACAGAGGCTGAAGCACCAAGTTTGACGACGAAGAGGATGGTGGTTGCGATTGATGAGAGCGACTCGAGCTTCTACGCTCTCCAATGGGTCATTGACCATTTCTCTAATCTTTTATTGACCACAGCGGCAGCTGAGGCGGAAAGTGGAATGCTCACGGTGATTCATGTGCAGTCCCCTTTCAATCACTTTGCTGCCTTTCCGGCTGGACCGGGCGGCGCCACAGTGTACGCATCTTCATCAATGATAGAGTCAGTGAAAAAGGCACAACAAGAGACCTCTGCTGCCCTTCTCTCTCGCGCTCTCCAAATGTGCCGAGCCAAGCAGATACGTACTGAAACTCTAGTGCTAGAAGGCGAGGCGAAGGAGATGATTTGTGAGGCGGTGGAGAAAATGCACGTTGATCTTCTCGTTGTGGGTAGTCGTGGCCTTGGCAAGATCAAAAGAGCGTTTCTTGGGAGCGTTAGCGATTACTGCGCTCATCACGCCAACTGCCCCATCCTTATTGTCAAGCCACCTAAGGAGATGACTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

199

Amino Acids

21.46

Weight (kDa)

5.53

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	32 - 193	2.8e-31	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11930 AT3G11930 AT3G11930 AT3G11930 AT3G58450 AT3G58450
fragaria_vesca	FvH4_6g21250
malus_domestica	MD14G1047700.v1.1 MD14G1047900.v1.1
prunus_persica	Prupe.7G087200_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477711
rosa_laevigata	RLG00000023696
rosa_multiflora	Rmu_co8357573.1_g000001 Rmu_sc0019064.1_g000001 Rmu_sc0019065.1_g000002
rosa_roxburghii	Rroxscaffold_6G00403730
rosa_rugosa	Rorug03G0162900
rosa_samantha	Rh3AG213100 Rh3BG246800 Rh3CG240600 Rh3DG239900
rosa_wichuraiana	Rw3G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	281
AccII	CGCG	1 cut(s)	363
AciI	CCGC	6 cut(s)	5, 41, 191, 203, 279, 446
AcuI	CTGAAG	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	282
AfaI	GTAC	2 cut(s)	293, 397
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	2 cut(s)	135, 197
AluI	AGCT	2 cut(s)	135, 197
Alw26I	GTCTC	2 cut(s)	53, 332
AlwNI	CAGNNNCTG	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	130
AoxI	GGCC	1 cut(s)	490
ApeKI	GCWGC	5 cut(s)	17, 52, 194, 257, 347
AspLEI	GCGC	3 cut(s)	284, 365, 542
AspS9I	GGNCC	1 cut(s)	272
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	235
AvaI	CYCGRG	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	272
AxyI	CCTNAGG	1 cut(s)	582
BanI	GGYRCC	1 cut(s)	281
BbvCI	CCTCAGC	1 cut(s)	198
BbvI	GCAGC	5 cut(s)	29, 64, 206, 244, 334
BccI	CCATC	2 cut(s)	97, 569
BceAI	ACGGC	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	53, 332
BfaI	CTAG	2 cut(s)	407, 413
BfoI	RGCGCY	1 cut(s)	285
BglI	GCCNNNNNGGC	1 cut(s)	266
BisI	GCNGC	7 cut(s)	18, 53, 192, 195, 258, 280, 348
BlsI	GCNGC	7 cut(s)	19, 54, 193, 196, 259, 281, 349
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	272
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	305
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
Bpu10I	CCTNAGC	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	493
Bse21I	CCTNAGG	1 cut(s)	582
Bse3DI	GCAATG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	493
BseGI	GGATG	2 cut(s)	108, 561
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	189
BseXI	GCAGC	5 cut(s)	29, 64, 206, 244, 334
BsgI	GTGCAG	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	492
BshNI	GGYRCC	1 cut(s)	281
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	266, 275
BslFI	GGGAC	1 cut(s)	223
BsmAI	GTCTC	2 cut(s)	53, 332
BsmBI	CGTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	492
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	130
Bsp143I	GATC	2 cut(s)	466, 501
BspACI	CCGC	6 cut(s)	5, 41, 191, 203, 279, 446
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	1 cut(s)	190
BspFNI	CGCG	1 cut(s)	363
BspLI	GGNNCC	1 cut(s)	283
BspQI	GCTCTTC	1 cut(s)	3
BspT107I	GGYRCC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	493
BssMI	GATC	2 cut(s)	466, 501
BssNI	GRCGYC	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	493
Bst4CI	ACNGT	2 cut(s)	223, 289
Bst6I	CTCTTC	2 cut(s)	3, 92
BstACI	GRCGYC	1 cut(s)	282
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	3 cut(s)	198, 582, 594
BstF5I	GGATG	2 cut(s)	108, 561
BstFNI	CGCG	1 cut(s)	363
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	3 cut(s)	284, 365, 542
BstKTI	GATC	2 cut(s)	469, 504
BstMAI	GTCTC	2 cut(s)	53, 332
BstMBI	GATC	2 cut(s)	466, 501
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 132, 200, 266, 537, 548
BstSCI	CCNGG	1 cut(s)	274
BstSNI	TACGTA	1 cut(s)	395
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	5 cut(s)	29, 64, 206, 244, 334
Bsu36I	CCTNAGG	1 cut(s)	582
BsuRI	GGCC	1 cut(s)	492
BtsCI	GGATG	2 cut(s)	108, 561
BtsIMutI	CAGTG	2 cut(s)	294, 324
Cac8I	GCNNGC	1 cut(s)	15
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	3 cut(s)	284, 365, 542
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	292, 396
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	8 cut(s)	55, 74, 135, 197, 269, 383, 492, 577
CviKI_1	RGCY	8 cut(s)	55, 74, 135, 197, 269, 383, 492, 577
CviQI	GTAC	2 cut(s)	292, 396
DdeI	CTNAG	3 cut(s)	198, 582, 594
DinI	GGCGCC	1 cut(s)	283
DpnI	GATC	2 cut(s)	468, 503
DpnII	GATC	2 cut(s)	466, 501
Eam1104I	CTCTTC	2 cut(s)	3, 92
EarI	CTCTTC	2 cut(s)	3, 92
EciI	GGCGGA	2 cut(s)	20, 218
Eco105I	TACGTA	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	493
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	96
Eco81I	CCTNAGG	1 cut(s)	582
Eco88I	CYCGRG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	493
EgeI	GGCGCC	1 cut(s)	283
EheI	GGCGCC	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	493
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	1 cut(s)	233
FaiI	YATR	1 cut(s)	231
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	1 cut(s)	229
Fnu4HI	GCNGC	7 cut(s)	18, 53, 192, 195, 258, 280, 348
FokI	GGATG	2 cut(s)	115, 548
Fsp4HI	GCNGC	7 cut(s)	18, 53, 192, 195, 258, 280, 348
FspBI	CTAG	2 cut(s)	407, 413
GlaI	GCGC	3 cut(s)	283, 364, 541
GluI	GCNGC	7 cut(s)	18, 53, 192, 195, 258, 280, 348
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	492
HapII	CCGG	2 cut(s)	266, 275
HhaI	GCGC	3 cut(s)	284, 365, 542
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	1 cut(s)	233
Hin6I	GCGC	3 cut(s)	282, 363, 540
HinP1I	GCGC	3 cut(s)	282, 363, 540
HinfI	GANTC	3 cut(s)	128, 226, 314
HpaII	CCGG	2 cut(s)	266, 275
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	292
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	3 cut(s)	25, 67, 97
HpyAV	CCTTC	3 cut(s)	362, 410, 421
HpyCH4III	ACNGT	2 cut(s)	223, 289
HpyCH4IV	ACGT	2 cut(s)	394, 462
HpyCH4V	TGCA	2 cut(s)	235, 460
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 132, 200, 266, 537, 548
HpyF3I	CTNAG	3 cut(s)	198, 582, 594
HpySE526I	ACGT	2 cut(s)	394, 462
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	233
HspAI	GCGC	3 cut(s)	282, 363, 540
KasI	GGCGCC	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	466, 501
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	522
LpnPI	CCDG	4 cut(s)	69, 255, 279, 288
Lsp1109I	GCAGC	5 cut(s)	29, 64, 206, 244, 334
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	2 cut(s)	407, 413
MaeII	ACGT	2 cut(s)	394, 462
MalI	GATC	2 cut(s)	468, 503
MboI	GATC	2 cut(s)	466, 501
MboII	GAAGA	4 cut(s)	20, 109, 291, 461
Mly113I	GGCGCC	1 cut(s)	282
MlyI	GAGTC	2 cut(s)	122, 323
MnlI	CCTC	6 cut(s)	64, 93, 193, 352, 415, 436
MspA1I	CMGCKG	2 cut(s)	191, 197
MspI	CCGG	2 cut(s)	266, 275
MspR9I	CCNGG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	219
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	6 cut(s)	23, 132, 200, 266, 537, 548
NarI	GGCGCC	1 cut(s)	282
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	2 cut(s)	466, 501
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	1 cut(s)	283
NmeAIII	GCCGAG	1 cut(s)	404
PaeR7I	CTCGAG	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	3
PctI	GAATGC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	7 cut(s)	19, 54, 193, 196, 259, 281, 349
PleI	GAGTC	2 cut(s)	122, 322
PluTI	GGCGCC	1 cut(s)	285
PpsI	GAGTC	2 cut(s)	122, 322
Ppu21I	YACGTR	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	272
PspXI	VCTCGAGB	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	293, 397
RsaNI	GTAC	2 cut(s)	292, 396
SapI	GCTCTTC	1 cut(s)	3
SatI	GCNGC	7 cut(s)	18, 53, 192, 195, 258, 280, 348
Sau3AI	GATC	2 cut(s)	466, 501
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	2 cut(s)	122, 323
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	6 cut(s)	137, 199, 344, 397, 465, 583
SfaNI	GCATC	1 cut(s)	305
SfoI	GGCGCC	1 cut(s)	283
Sfr274I	CTCGAG	1 cut(s)	130
SinI	GGWCC	1 cut(s)	272
SlaI	CTCGAG	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
SnaBI	TACGTA	1 cut(s)	395
SsiI	CCGC	6 cut(s)	5, 41, 191, 203, 279, 446
SspDI	GGCGCC	1 cut(s)	281
SspMI	CTAG	2 cut(s)	407, 413
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	2 cut(s)	223, 289
TaiI	ACGT	2 cut(s)	397, 465
TaqI	TCGA	1 cut(s)	131
TauI	GCSGC	2 cut(s)	194, 282
TfiI	GAWTC	1 cut(s)	226
TscAI	CASTG	2 cut(s)	294, 324
TseI	GCWGC	5 cut(s)	17, 52, 194, 257, 347
TspDTI	ATGAA	2 cut(s)	218, 291
TspRI	CASTG	2 cut(s)	294, 324
VpaK11BI	GGWCC	1 cut(s)	272
XhoI	CTCGAG	1 cut(s)	130
XspI	CTAG	2 cut(s)	407, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.