Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007298

Physical Location & Seq

Genomic Coordinates Reverse (-)

12150320 .. 12152183

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G087200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAAAGAGAGAGAGAGAGCGACGAATATATATGTATGTATGTATATATACCATTCAAAAGCACCAACAAAACCACACAACAAGAAGATATCTCAGCCAAGCAAGTGATGCAGACAACAATAGTTGCAGAGCAGGCAGTGGTGCAAAGCGGGGACGACGAGCAACAGAGGAAGAAGGAGAAGATGAGGGTGGTGGTGGCCATAGACGGAAGTGAGGGGAGCTTCTATGCTCTCAAGTGGGCCCTTGACCTTCTTCTTGTGCTGCCCAAGGACAACGCCGATGATGTGGCTACAAGCACAGGCACGGCGACCCTGGAAGCACCTCTTGCAGGGAGCCATGAGAATGTGAGCATGGTGACTCTTGTTTATGTTATGCAGCCGTTCCAGAACTACGTCCTCTCTGCTGCTGTGTCTGGTGAATTGCGCAAGGAACAAGAAGAGAGGGCTGCCGCTATACTCGCCCGCGCTTTGGAGATTTGCAAGGATAAGAAGATCAAAGCAGAAACCCTAATTCTAGGTGGAGATCCGAAGGACATGATTTGTCAAGCCACAGAGCAGATGCATGTGGATCTTTTGGTTGTAGGCAGCCGTGGCCTTGGCATAATCAAGAGAACATTCATAGGAAGCGTGAGTGACTACTGCGCACATCACGCAAAATGCCCAGTTGTAATTGTTAAGCCACCCAAGGAGTCTGGAAAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

235

Amino Acids

25.82

Weight (kDa)

6.0

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11930 AT3G11930 AT3G11930 AT3G11930 AT3G58450 AT3G58450
fragaria_vesca	FvH4_6g21250
malus_domestica	MD14G1047700.v1.1 MD14G1047900.v1.1
prunus_persica	Prupe.7G087200_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477711
rosa_laevigata	RLG00000023696
rosa_multiflora	Rmu_co8357573.1_g000001 Rmu_sc0019064.1_g000001 Rmu_sc0019065.1_g000002
rosa_roxburghii	Rroxscaffold_6G00403730
rosa_rugosa	Rorug03G0162900
rosa_samantha	Rh3AG213100 Rh3BG246800 Rh3CG240600 Rh3DG239900
rosa_wichuraiana	Rw3G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	425, 643
AccII	CGCG	1 cut(s)	465
AciI	CCGC	3 cut(s)	150, 450, 463
AclWI	GGATC	2 cut(s)	518, 576
AcoI	YGGCCR	1 cut(s)	198
AfiI	CCNNNNNNNGG	2 cut(s)	329, 469
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	1 cut(s)	222
AluI	AGCT	1 cut(s)	222
AlwI	GGATC	2 cut(s)	518, 576
AoxI	GGCC	3 cut(s)	198, 240, 592
ApaI	GGGCCC	1 cut(s)	244
ApeKI	GCWGC	5 cut(s)	262, 376, 404, 446, 585
AspLEI	GCGC	3 cut(s)	426, 467, 644
AspS9I	GGNCC	2 cut(s)	240, 241
AsuHPI	GGTGA	2 cut(s)	367, 428
BaeGI	GKGCMC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	244
BbvI	GCAGC	5 cut(s)	249, 388, 391, 433, 597
BceAI	ACGGC	3 cut(s)	321, 364, 573
BciT130I	CCWGG	1 cut(s)	314
BfaI	CTAG	1 cut(s)	515
BisI	GCNGC	6 cut(s)	263, 377, 405, 447, 450, 586
BlsI	GCNGC	6 cut(s)	264, 378, 406, 448, 451, 587
Bme1390I	CCNGG	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	240, 241
BmiI	GGNNCC	2 cut(s)	242, 335
BmrFI	CCNGG	1 cut(s)	314
BmrI	ACTGGG	1 cut(s)	656
BmsI	GCATC	2 cut(s)	99, 549
BmuI	ACTGGG	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	218
BsaJI	CCNNGG	5 cut(s)	267, 312, 589, 595, 684
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 469
Bse1I	ACTGG	1 cut(s)	662
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	5 cut(s)	267, 312, 589, 595, 684
BseLI	CCNNNNNNNGG	2 cut(s)	329, 469
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	662
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	5 cut(s)	249, 388, 391, 433, 597
Bsh1236I	CGCG	1 cut(s)	465
BshFI	GGCC	3 cut(s)	200, 242, 594
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	329, 469
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	3 cut(s)	200, 242, 594
Bsp120I	GGGCCC	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	492, 523, 568
BspACI	CCGC	3 cut(s)	150, 450, 463
BspANI	GGCC	3 cut(s)	200, 242, 594
BspCNI	CTCAG	1 cut(s)	107
BspFNI	CGCG	1 cut(s)	465
BspLI	GGNNCC	2 cut(s)	242, 335
BspPI	GGATC	2 cut(s)	518, 576
BsrI	ACTGG	1 cut(s)	662
BssECI	CCNNGG	5 cut(s)	267, 312, 589, 595, 684
BssMI	GATC	3 cut(s)	492, 523, 568
BssT1I	CCWWGG	3 cut(s)	267, 595, 684
Bst2UI	CCWGG	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	432
BstAPI	GCANNNNNTGC	2 cut(s)	109, 326
BstC8I	GCNNGC	2 cut(s)	135, 463
BstDEI	CTNAG	1 cut(s)	94
BstDSI	CCRYGG	1 cut(s)	589
BstENI	CCTNNNNNAGG	1 cut(s)	327
BstFNI	CGCG	1 cut(s)	465
BstHHI	GCGC	3 cut(s)	426, 467, 644
BstKTI	GATC	3 cut(s)	495, 526, 571
BstMBI	GATC	3 cut(s)	492, 523, 568
BstMWI	GCNNNNNNNGC	6 cut(s)	109, 134, 326, 458, 591, 650
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	312
BstSLI	GKGCMC	1 cut(s)	244
BstUI	CGCG	1 cut(s)	465
BstV1I	GCAGC	5 cut(s)	249, 388, 391, 433, 597
BstX2I	RGATCY	2 cut(s)	523, 568
BstYI	RGATCY	2 cut(s)	523, 568
BsuRI	GGCC	3 cut(s)	200, 242, 594
BtgI	CCRYGG	1 cut(s)	589
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	135, 463
CfoI	GCGC	3 cut(s)	426, 467, 644
Cfr13I	GGNCC	2 cut(s)	240, 241
CviAII	CATG	4 cut(s)	338, 352, 535, 563
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	3 cut(s)	494, 525, 570
DpnII	GATC	3 cut(s)	492, 523, 568
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco130I	CCWWGG	3 cut(s)	267, 595, 684
Eco24I	GRGCYC	1 cut(s)	244
Eco32I	GATATC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	312
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	3 cut(s)	267, 595, 684
EcoT22I	ATGCAT	1 cut(s)	564
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	3 cut(s)	267, 595, 684
FaeI	CATG	4 cut(s)	341, 355, 538, 566
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	4 cut(s)	337, 351, 534, 562
FauI	CCCGC	2 cut(s)	143, 470
Fnu4HI	GCNGC	6 cut(s)	263, 377, 405, 447, 450, 586
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	6 cut(s)	263, 377, 405, 447, 450, 586
FspBI	CTAG	1 cut(s)	515
FspI	TGCGCA	2 cut(s)	425, 643
GlaI	GCGC	3 cut(s)	425, 466, 643
GluI	GCNGC	6 cut(s)	263, 377, 405, 447, 450, 586
HaeIII	GGCC	3 cut(s)	200, 242, 594
HhaI	GCGC	3 cut(s)	426, 467, 644
Hin1II	CATG	4 cut(s)	341, 355, 538, 566
Hin6I	GCGC	3 cut(s)	424, 465, 642
HinP1I	GCGC	3 cut(s)	424, 465, 642
HinfI	GANTC	2 cut(s)	358, 689
HphI	GGTGA	2 cut(s)	367, 428
Hpy188I	TCNGA	1 cut(s)	528
Hpy188III	TCNNGA	3 cut(s)	385, 607, 693
Hpy99I	CGWCG	2 cut(s)	26, 161
HpyAV	CCTTC	3 cut(s)	169, 260, 523
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	7 cut(s)	112, 128, 145, 329, 376, 480, 562
HpyF10VI	GCNNNNNNNGC	6 cut(s)	109, 134, 326, 458, 591, 650
HpyF3I	CTNAG	1 cut(s)	94
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	4 cut(s)	341, 355, 538, 566
HspAI	GCGC	3 cut(s)	424, 465, 642
Kzo9I	GATC	3 cut(s)	492, 523, 568
LmnI	GCTCC	2 cut(s)	219, 333
LpnPI	CCDG	9 cut(s)	119, 285, 299, 315, 326, 398, 399, 675, 678
Lsp1109I	GCAGC	5 cut(s)	249, 388, 391, 433, 597
LweI	GCATC	2 cut(s)	99, 549
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	2 cut(s)	355, 632
MalI	GATC	3 cut(s)	494, 525, 570
MboI	GATC	3 cut(s)	492, 523, 568
MboII	GAAGA	6 cut(s)	98, 184, 193, 245, 449, 502
MflI	RGATCY	2 cut(s)	523, 568
MhlI	GDGCHC	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	3 cut(s)	419, 510, 669
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	352, 698
MnlI	CCTC	6 cut(s)	162, 180, 208, 333, 407, 435
Mox20I	TGGCCA	1 cut(s)	200
Mph1103I	ATGCAT	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	1 cut(s)	675
MslI	CAYNNNNRTG	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	6 cut(s)	109, 134, 326, 458, 591, 650
NdeII	GATC	3 cut(s)	492, 523, 568
NlaIII	CATG	4 cut(s)	341, 355, 538, 566
NlaIV	GGNNCC	2 cut(s)	242, 335
NmuCI	GTSAC	2 cut(s)	355, 632
NsbI	TGCGCA	2 cut(s)	425, 643
NsiI	ATGCAT	1 cut(s)	564
NspI	RCATGY	1 cut(s)	566
PkrI	GCNGC	6 cut(s)	264, 378, 406, 448, 451, 587
PleI	GAGTC	2 cut(s)	352, 697
PpsI	GAGTC	2 cut(s)	352, 697
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	242, 335
PspOMI	GGGCCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	240, 241
PsuI	RGATCY	2 cut(s)	523, 568
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	6 cut(s)	263, 377, 405, 447, 450, 586
Sau3AI	GATC	3 cut(s)	492, 523, 568
Sau96I	GGNCC	2 cut(s)	240, 241
SchI	GAGTC	2 cut(s)	352, 698
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	5 cut(s)	224, 252, 325, 396, 520
SfaNI	GCATC	2 cut(s)	99, 549
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	3 cut(s)	419, 510, 669
SsiI	CCGC	3 cut(s)	150, 450, 463
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	3 cut(s)	267, 595, 684
TaiI	ACGT	1 cut(s)	396
TasI	AATT	3 cut(s)	419, 510, 669
TauI	GCSGC	1 cut(s)	452
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	2 cut(s)	355, 632
TseI	GCWGC	5 cut(s)	262, 376, 404, 446, 585
Tsp45I	GTSAC	2 cut(s)	355, 632
TspDTI	ATGAA	2 cut(s)	17, 607
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	144
XagI	CCTNNNNNAGG	1 cut(s)	327
XceI	RCATGY	1 cut(s)	566
XspI	CTAG	1 cut(s)	515
Zsp2I	ATGCAT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.