Rh3BG246800

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0007298
Physical Location & Seq
Forward (+)
23488329 .. 23490069
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG246800.1

Sequence Viewer

Length: 504 bp
ATGGAGACCACATACGCAGCTCCCGGTACCACAGTGCAGACGACCCCATTGGTGCACGTTGGGGATGAGGGACTGAGAAGAACGAAGATGAGGGTGATGGTCGCCATCGACGAAAGCGACTCGAGCTTCTACGCGCTCAACTGGGCGCTTGACCACCTCTTTATCAACGCGCCGAGTACTCTGGAAGGCGGCGAGGGGGAAGGGGGGATGGTGACGGTGGTCCACGTCACGCAGCCGTTTCAGCACTTTGTGTACCCTGCCGGACCTGCCGGAGCAACCTATTATGCATCCGCGTCGGTGGTGGAGTCGGTGAAGAAAGCTCAGCAGGAGAATTCTGCTGCCATTCTCTCCCGCGCTATGCAGATTTGCAAGGATAGGATGATCAAAGCAGAAACTCTGACTCTGACTGGAGATCCAAAGGACATGATTTGTCAAGCCACAGAGCAGATGCATGTAGATCTTCTTGTTGTGGGTAGTCGTGGCCTGGGCATGGTCAAGAGGTAA

Protein Analysis

167

Amino Acids

18.05

Weight (kDa)

5.69

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 31 - 167 1.2e-15 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 274
Acc65I GGTACC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 26
AccII CGCG 4 cut(s) 134, 170, 293, 354
AciI CCGC 3 cut(s) 189, 291, 352
AclWI GGATC 1 cut(s) 407
AcsI RAATTY 1 cut(s) 331
AdeI CACNNNGTG 1 cut(s) 250
AfaI GTAC 3 cut(s) 28, 178, 254
AfiI CCNNNNNNNGG 1 cut(s) 490
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 483
AluBI AGCT 3 cut(s) 20, 126, 320
AluI AGCT 3 cut(s) 20, 126, 320
Alw21I GWGCWC 1 cut(s) 57
Alw44I GTGCAC 1 cut(s) 53
AlwI GGATC 1 cut(s) 407
Ama87I CYCGRG 1 cut(s) 121
AoxI GGCC 1 cut(s) 481
ApaLI GTGCAC 1 cut(s) 53
ApeKI GCWGC 3 cut(s) 17, 232, 338
ApoI RAATTY 1 cut(s) 331
Asp718I GGTACC 1 cut(s) 26
AspLEI GCGC 4 cut(s) 136, 148, 172, 356
AspS9I GGNCC 2 cut(s) 220, 263
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 3 cut(s) 106, 223, 322
AvaI CYCGRG 1 cut(s) 121
AvaII GGWCC 2 cut(s) 220, 263
BaeGI GKGCMC 1 cut(s) 57
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BanI GGYRCC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 3 cut(s) 29, 244, 325
BccI CCATC 3 cut(s) 91, 113, 202
BceAI ACGGC 1 cut(s) 220
BcgI CGANNNNNNTGC 2 cut(s) 276, 310
BciT130I CCWGG 1 cut(s) 485
BclI TGATCA 1 cut(s) 381
BcnI CCSGG 1 cut(s) 24
BfoI RGCGCY 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 274
BglII AGATCT 1 cut(s) 457
BisI GCNGC 4 cut(s) 18, 190, 233, 339
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 4 cut(s) 19, 191, 234, 340
BmcAI AGTACT 1 cut(s) 178
Bme1390I CCNGG 2 cut(s) 24, 485
Bme18I GGWCC 2 cut(s) 220, 263
BmeT110I CYCGRG 1 cut(s) 121
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 220, 263
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 2 cut(s) 24, 485
BmrI ACTGGG 1 cut(s) 151
BmsI GCATC 2 cut(s) 296, 438
BmuI ACTGGG 1 cut(s) 151
BoxI GACNNNNGTC 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 429
Bpu1102I GCTNAGC 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 484
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse1I ACTGG 2 cut(s) 146, 412
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 484
BseGI GGATG 4 cut(s) 70, 213, 287, 384
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMII CTCAG 2 cut(s) 65, 335
BseNI ACTGG 2 cut(s) 146, 412
BseSI GKGCMC 1 cut(s) 57
BseXI GCAGC 3 cut(s) 29, 244, 325
BsgI GTGCAG 1 cut(s) 56
Bsh1236I CGCG 4 cut(s) 134, 170, 293, 354
BshFI GGCC 1 cut(s) 483
BshNI GGYRCC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 121
BsiSI CCGG 3 cut(s) 24, 261, 270
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 490
BsmFI GGGAC 1 cut(s) 84
BsnI GGCC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 381, 412, 457
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 3 cut(s) 189, 291, 352
BspANI GGCC 1 cut(s) 483
BspCNI CTCAG 2 cut(s) 66, 334
BspFNI CGCG 4 cut(s) 134, 170, 293, 354
BspLI GGNNCC 1 cut(s) 28
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 1 cut(s) 407
BspT107I GGYRCC 1 cut(s) 26
BsrI ACTGG 2 cut(s) 146, 412
BssECI CCNNGG 1 cut(s) 484
BssMI GATC 3 cut(s) 381, 412, 457
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 2 cut(s) 34, 217
BstDEI CTNAG 2 cut(s) 74, 321
BstF5I GGATG 4 cut(s) 70, 213, 287, 384
BstFNI CGCG 4 cut(s) 134, 170, 293, 354
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 4 cut(s) 136, 148, 172, 356
BstKTI GATC 3 cut(s) 384, 415, 460
BstMBI GATC 3 cut(s) 381, 412, 457
BstMWI GCNNNNNNNGC 3 cut(s) 123, 241, 266
BstNI CCWGG 1 cut(s) 485
BstNSI RCATGY 1 cut(s) 455
BstPAI GACNNNNGTC 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 22, 483
BstSLI GKGCMC 1 cut(s) 57
BstUI CGCG 4 cut(s) 134, 170, 293, 354
BstV1I GCAGC 3 cut(s) 29, 244, 325
BstX2I RGATCY 2 cut(s) 412, 457
BstYI RGATCY 2 cut(s) 412, 457
BsuRI GGCC 1 cut(s) 483
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 4 cut(s) 70, 213, 287, 384
BtsIMutI CAGTG 1 cut(s) 39
BveI ACCTGC 1 cut(s) 274
CfoI GCGC 4 cut(s) 136, 148, 172, 356
Cfr13I GGNCC 2 cut(s) 220, 263
CseI GACGC 1 cut(s) 282
Csp6I GTAC 3 cut(s) 27, 177, 253
CviAII CATG 3 cut(s) 424, 452, 490
CviJI RGCY 6 cut(s) 20, 126, 235, 320, 437, 483
CviKI_1 RGCY 6 cut(s) 20, 126, 235, 320, 437, 483
CviQI GTAC 3 cut(s) 27, 177, 253
DdeI CTNAG 2 cut(s) 74, 321
DpnI GATC 3 cut(s) 383, 414, 459
DpnII GATC 3 cut(s) 381, 412, 457
DraIII CACNNNGTG 1 cut(s) 250
Eco47I GGWCC 2 cut(s) 220, 263
Eco88I CYCGRG 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 483
EcoT22I ATGCAT 2 cut(s) 289, 453
FaeI CATG 3 cut(s) 427, 455, 493
FaiI YATR 6 cut(s) 13, 285, 359, 425, 453, 491
FaqI GGGAC 1 cut(s) 84
FatI CATG 3 cut(s) 423, 451, 489
FauI CCCGC 1 cut(s) 359
FbaI TGATCA 1 cut(s) 381
Fnu4HI GCNGC 4 cut(s) 18, 190, 233, 339
FokI GGATG 4 cut(s) 77, 220, 274, 391
Fsp4HI GCNGC 4 cut(s) 18, 190, 233, 339
GlaI GCGC 4 cut(s) 135, 147, 171, 355
GluI GCNGC 4 cut(s) 18, 190, 233, 339
GsuI CTGGAG 1 cut(s) 429
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 1 cut(s) 483
HapII CCGG 3 cut(s) 24, 261, 270
HgaI GACGC 1 cut(s) 282
HhaI GCGC 4 cut(s) 136, 148, 172, 356
Hin1II CATG 3 cut(s) 427, 455, 493
Hin6I GCGC 4 cut(s) 134, 146, 170, 354
HinP1I GCGC 4 cut(s) 134, 146, 170, 354
HinfI GANTC 3 cut(s) 119, 305, 400
HpaII CCGG 3 cut(s) 24, 261, 270
HphI GGTGA 3 cut(s) 106, 223, 322
Hpy166II GTNNAC 3 cut(s) 55, 223, 253
Hpy188I TCNGA 2 cut(s) 399, 405
Hpy188III TCNNGA 2 cut(s) 182, 496
Hpy8I GTNNAC 3 cut(s) 55, 223, 253
Hpy99I CGWCG 2 cut(s) 113, 298
HpyAV CCTTC 2 cut(s) 179, 194
HpyCH4III ACNGT 2 cut(s) 34, 217
HpyCH4IV ACGT 2 cut(s) 57, 225
HpyCH4V TGCA 6 cut(s) 37, 55, 287, 361, 369, 451
HpyF10VI GCNNNNNNNGC 3 cut(s) 123, 241, 266
HpyF3I CTNAG 2 cut(s) 74, 321
HpySE526I ACGT 2 cut(s) 57, 225
Hsp92II CATG 3 cut(s) 427, 455, 493
HspAI GCGC 4 cut(s) 134, 146, 170, 354
KpnI GGTACC 1 cut(s) 30
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 3 cut(s) 381, 412, 457
LmnI GCTCC 2 cut(s) 25, 272
Lsp1109I GCAGC 3 cut(s) 29, 244, 325
LweI GCATC 2 cut(s) 296, 438
MaeII ACGT 2 cut(s) 57, 225
MaeIII GTNAC 2 cut(s) 211, 226
MalI GATC 3 cut(s) 383, 414, 459
MboI GATC 3 cut(s) 381, 412, 457
MboII GAAGA 4 cut(s) 90, 97, 325, 452
MflI RGATCY 2 cut(s) 412, 457
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 1 cut(s) 331
MlyI GAGTC 3 cut(s) 113, 314, 394
MnlI CCTC 5 cut(s) 61, 84, 167, 187, 492
Mph1103I ATGCAT 2 cut(s) 289, 453
MspI CCGG 3 cut(s) 24, 261, 270
MspR9I CCNGG 2 cut(s) 24, 485
MvaI CCWGG 1 cut(s) 485
MvnI CGCG 4 cut(s) 134, 170, 293, 354
MwoI GCNNNNNNNGC 3 cut(s) 123, 241, 266
NciI CCSGG 1 cut(s) 24
NdeII GATC 3 cut(s) 381, 412, 457
NlaIII CATG 3 cut(s) 427, 455, 493
NlaIV GGNNCC 1 cut(s) 28
NmeAIII GCCGAG 1 cut(s) 198
NmuCI GTSAC 2 cut(s) 211, 226
NsiI ATGCAT 2 cut(s) 289, 453
NspI RCATGY 1 cut(s) 455
PaeR7I CTCGAG 1 cut(s) 121
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 114
PkrI GCNGC 4 cut(s) 19, 191, 234, 340
PleI GAGTC 3 cut(s) 113, 313, 394
PpsI GAGTC 3 cut(s) 113, 313, 394
PshAI GACNNNNGTC 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 483
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 2 cut(s) 220, 263
PspXI VCTCGAGB 1 cut(s) 121
PsuI RGATCY 2 cut(s) 412, 457
RsaI GTAC 3 cut(s) 28, 178, 254
RsaNI GTAC 3 cut(s) 27, 177, 253
SatI GCNGC 4 cut(s) 18, 190, 233, 339
Sau3AI GATC 3 cut(s) 381, 412, 457
Sau96I GGNCC 2 cut(s) 220, 263
ScaI AGTACT 1 cut(s) 178
SchI GAGTC 3 cut(s) 113, 314, 394
ScrFI CCNGG 2 cut(s) 24, 485
SduI GDGCHC 1 cut(s) 57
SetI ASST 9 cut(s) 22, 60, 128, 159, 228, 268, 281, 322, 503
SfaNI GCATC 2 cut(s) 296, 438
Sfr274I CTCGAG 1 cut(s) 121
SinI GGWCC 2 cut(s) 220, 263
SlaI CTCGAG 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
Sse9I AATT 1 cut(s) 331
SsiI CCGC 3 cut(s) 189, 291, 352
StyD4I CCNGG 2 cut(s) 22, 483
TaaI ACNGT 2 cut(s) 34, 217
TaiI ACGT 2 cut(s) 60, 228
TaqI TCGA 2 cut(s) 108, 122
TasI AATT 1 cut(s) 331
TatI WGTACW 1 cut(s) 176
TauI GCSGC 1 cut(s) 192
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 2 cut(s) 211, 226
TseI GCWGC 3 cut(s) 17, 232, 338
Tsp45I GTSAC 2 cut(s) 211, 226
TspRI CASTG 1 cut(s) 39
VneI GTGCAC 1 cut(s) 53
VpaK11BI GGWCC 2 cut(s) 220, 263
XapI RAATTY 1 cut(s) 331
XceI RCATGY 1 cut(s) 455
XhoI CTCGAG 1 cut(s) 121
ZrmI AGTACT 1 cut(s) 178
Zsp2I ATGCAT 2 cut(s) 289, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.