Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007298

Physical Location & Seq

Genomic Coordinates Reverse (-)

12158835 .. 12160150

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G087400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAGACAAAAGTTGCAGAGCAGGCAGTGGAGGAGCAACAGGGGAAGAAGAAGATGAGGGTGATGGTGGCCATAGACGAGAGTGAGTGGAGCTTCTACGCGCTCAAGTGGGCGCTTGACCATCTTTTTGTGGGGCCTAATGACAAGGCCGGTGTGGCGGCGACCCGGGAAGCACCTGCGGTGAGCCAAGAGAATGTGAGCATGGCGACTTTGGTCCACGTTATGCCGCCGTTCTATAACTACGTCCTCCCGGCTGGGCCCGGTGGAGCTGCATATTATGTGACGCCGGCTCTGTTGGAATCTGTGCGCAAGGCGCAAGAAGACGGTGCTGCCGATGTACTCTCCCGCGCTTTGGAGATATGCAAGGATAAGATGATCAAAGCAGAAACCCTAATTCTACGTGGAGATCCGAAGGACATGATTTGCGAAGCCACTGAGCAGAGCCATGTGGATCTTCTGGTTGTAGGTAGCCGTGGCCTTGGCATGGTCAAGAGAGCATTCTTAGGAAGCGTTAGTGACTACTGCGCACATCATGCAAAATGCCCAGTTGTAATTGTGAAGCCACCTAAGGAGTCTGGAAAGCCACCTAAGGAGTCTGGAAAGCCACCAAAGGAGTCTGGAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

210

Amino Acids

22.66

Weight (kDa)

7.66

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11930 AT3G11930 AT3G11930 AT3G11930 AT3G58450 AT3G58450
fragaria_vesca	FvH4_6g21250
malus_domestica	MD14G1047700.v1.1 MD14G1047900.v1.1
prunus_persica	Prupe.7G087200_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477711
rosa_laevigata	RLG00000023696
rosa_multiflora	Rmu_co8357573.1_g000001 Rmu_sc0019064.1_g000001 Rmu_sc0019065.1_g000002
rosa_roxburghii	Rroxscaffold_6G00403730
rosa_rugosa	Rorug03G0162900
rosa_samantha	Rh3AG213100 Rh3BG246800 Rh3CG240600 Rh3DG239900
rosa_wichuraiana	Rw3G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	184
Acc16I	TGCGCA	2 cut(s)	308, 526
Acc36I	ACCTGC	1 cut(s)	184
AccII	CGCG	2 cut(s)	101, 348
AciI	CCGC	4 cut(s)	158, 179, 227, 346
AclWI	GGATC	2 cut(s)	401, 459
AcoI	YGGCCR	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	2 cut(s)	352, 484
AluBI	AGCT	2 cut(s)	93, 269
AluI	AGCT	2 cut(s)	93, 269
AlwI	GGATC	2 cut(s)	401, 459
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	5 cut(s)	69, 134, 147, 257, 475
ApaI	GGGCCC	1 cut(s)	261
ApeKI	GCWGC	2 cut(s)	269, 329
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspLEI	GCGC	6 cut(s)	103, 115, 309, 316, 350, 527
AspS9I	GGNCC	4 cut(s)	134, 214, 257, 258
AsuC2I	CCSGG	4 cut(s)	166, 167, 251, 261
AsuHPI	GGTGA	2 cut(s)	73, 193
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	214
AxyI	CCTNAGG	2 cut(s)	567, 588
BaeGI	GKGCMC	1 cut(s)	261
BalI	TGGCCA	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	256, 316
BccI	CCATC	2 cut(s)	58, 129
BceAI	ACGGC	2 cut(s)	214, 456
BclI	TGATCA	1 cut(s)	375
BcnI	CCSGG	4 cut(s)	166, 167, 251, 261
BfoI	RGCGCY	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	184
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	4 cut(s)	159, 227, 270, 330
BlsI	GCNGC	4 cut(s)	160, 228, 271, 331
Bme1390I	CCNGG	4 cut(s)	166, 167, 251, 261
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	4 cut(s)	134, 214, 257, 258
BmiI	GGNNCC	2 cut(s)	135, 259
BmrFI	CCNGG	4 cut(s)	166, 167, 251, 261
BmrI	ACTGGG	1 cut(s)	539
BmuI	ACTGGG	1 cut(s)	539
BoxI	GACNNNNGTC	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	4 cut(s)	166, 167, 251, 261
BsaAI	YACGTR	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	165, 472, 478
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 484
Bse118I	RCCGGY	2 cut(s)	149, 286
Bse1I	ACTGG	1 cut(s)	545
Bse21I	CCTNAGG	2 cut(s)	567, 588
BseDI	CCNNGG	3 cut(s)	165, 472, 478
BseLI	CCNNNNNNNGG	2 cut(s)	352, 484
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	545
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	256, 316
BseYI	CCCAGC	1 cut(s)	254
Bsh1236I	CGCG	2 cut(s)	101, 348
BshFI	GGCC	5 cut(s)	71, 136, 149, 259, 477
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	5 cut(s)	150, 166, 251, 261, 287
BslI	CCNNNNNNNGG	2 cut(s)	352, 484
BsmI	GAATGC	1 cut(s)	497
BsnI	GGCC	5 cut(s)	71, 136, 149, 259, 477
BsoBI	CYCGRG	1 cut(s)	165
Bsp120I	GGGCCC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	3 cut(s)	375, 406, 451
BspACI	CCGC	4 cut(s)	158, 179, 227, 346
BspANI	GGCC	5 cut(s)	71, 136, 149, 259, 477
BspCNI	CTCAG	1 cut(s)	427
BspFNI	CGCG	2 cut(s)	101, 348
BspLI	GGNNCC	2 cut(s)	135, 259
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	2 cut(s)	401, 459
BsrFI	RCCGGY	2 cut(s)	149, 286
BsrI	ACTGG	1 cut(s)	545
BssAI	RCCGGY	2 cut(s)	149, 286
BssECI	CCNNGG	3 cut(s)	165, 472, 478
BssMI	GATC	3 cut(s)	375, 406, 451
BssNI	GRCGYC	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	478
Bst4CI	ACNGT	1 cut(s)	326
BstACI	GRCGYC	1 cut(s)	284
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstBAI	YACGTR	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	24, 288
BstDEI	CTNAG	4 cut(s)	435, 502, 567, 588
BstDSI	CCRYGG	1 cut(s)	472
BstFNI	CGCG	2 cut(s)	101, 348
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	6 cut(s)	103, 115, 309, 316, 350, 527
BstKTI	GATC	3 cut(s)	378, 409, 454
BstMBI	GATC	3 cut(s)	375, 406, 451
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 155, 313, 533
BstPAI	GACNNNNGTC	1 cut(s)	212
BstSCI	CCNGG	4 cut(s)	164, 165, 249, 259
BstSLI	GKGCMC	1 cut(s)	261
BstUI	CGCG	2 cut(s)	101, 348
BstV1I	GCAGC	2 cut(s)	256, 316
BstV2I	GAAGAC	1 cut(s)	327
BstX2I	RGATCY	2 cut(s)	406, 451
BstYI	RGATCY	2 cut(s)	406, 451
Bsu36I	CCTNAGG	2 cut(s)	567, 588
BsuRI	GGCC	5 cut(s)	71, 136, 149, 259, 477
BtgI	CCRYGG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	33, 432
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	24, 288
CfoI	GCGC	6 cut(s)	103, 115, 309, 316, 350, 527
Cfr10I	RCCGGY	2 cut(s)	149, 286
Cfr13I	GGNCC	4 cut(s)	134, 214, 257, 258
Cfr9I	CCCGGG	1 cut(s)	165
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	5 cut(s)	202, 418, 446, 484, 533
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	4 cut(s)	435, 502, 567, 588
DpnI	GATC	3 cut(s)	377, 408, 453
DpnII	GATC	3 cut(s)	375, 406, 451
EaeI	YGGCCR	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	478
Eco24I	GRGCYC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	214
Eco81I	CCTNAGG	2 cut(s)	567, 588
Eco88I	CYCGRG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	5 cut(s)	205, 421, 449, 487, 536
FatI	CATG	5 cut(s)	201, 417, 445, 483, 532
FauI	CCCGC	1 cut(s)	353
FbaI	TGATCA	1 cut(s)	375
Fnu4HI	GCNGC	4 cut(s)	159, 227, 270, 330
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	4 cut(s)	159, 227, 270, 330
FspI	TGCGCA	2 cut(s)	308, 526
GlaI	GCGC	6 cut(s)	102, 114, 308, 315, 349, 526
GluI	GCNGC	4 cut(s)	159, 227, 270, 330
GsaI	CCCAGC	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	5 cut(s)	71, 136, 149, 259, 477
HapII	CCGG	5 cut(s)	150, 166, 251, 261, 287
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	6 cut(s)	103, 115, 309, 316, 350, 527
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	5 cut(s)	205, 421, 449, 487, 536
Hin6I	GCGC	6 cut(s)	101, 113, 307, 314, 348, 525
HinP1I	GCGC	6 cut(s)	101, 113, 307, 314, 348, 525
HinfI	GANTC	4 cut(s)	299, 572, 593, 614
HpaII	CCGG	5 cut(s)	150, 166, 251, 261, 287
HphI	GGTGA	2 cut(s)	73, 193
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	411
Hpy188III	TCNNGA	4 cut(s)	490, 576, 597, 618
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	3 cut(s)	219, 243, 400
HpyCH4V	TGCA	4 cut(s)	17, 272, 363, 536
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 155, 313, 533
HpyF3I	CTNAG	4 cut(s)	435, 502, 567, 588
HpySE526I	ACGT	3 cut(s)	219, 243, 400
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	5 cut(s)	205, 421, 449, 487, 536
HspAI	GCGC	6 cut(s)	101, 113, 307, 314, 348, 525
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	3 cut(s)	375, 406, 451
LmnI	GCTCC	3 cut(s)	34, 90, 266
Lsp1109I	GCAGC	2 cut(s)	256, 316
MaeII	ACGT	3 cut(s)	219, 243, 400
MaeIII	GTNAC	2 cut(s)	280, 515
MalI	GATC	3 cut(s)	377, 408, 453
MboI	GATC	3 cut(s)	375, 406, 451
MboII	GAAGA	5 cut(s)	58, 61, 64, 332, 446
MflI	RGATCY	2 cut(s)	406, 451
MhlI	GDGCHC	1 cut(s)	261
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	2 cut(s)	393, 552
MluNI	TGGCCA	1 cut(s)	71
MlyI	GAGTC	3 cut(s)	581, 602, 623
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	3 cut(s)	25, 51, 257
Mox20I	TGGCCA	1 cut(s)	71
MroNI	GCCGGC	1 cut(s)	286
MscI	TGGCCA	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	71
MspI	CCGG	5 cut(s)	150, 166, 251, 261, 287
MspR9I	CCNGG	4 cut(s)	166, 167, 251, 261
Mva1269I	GAATGC	1 cut(s)	497
MvnI	CGCG	2 cut(s)	101, 348
MwoI	GCNNNNNNNGC	4 cut(s)	23, 155, 313, 533
NaeI	GCCGGC	1 cut(s)	288
NciI	CCSGG	4 cut(s)	166, 167, 251, 261
NdeII	GATC	3 cut(s)	375, 406, 451
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	5 cut(s)	205, 421, 449, 487, 536
NlaIV	GGNNCC	2 cut(s)	135, 259
NmuCI	GTSAC	2 cut(s)	280, 515
NsbI	TGCGCA	2 cut(s)	308, 526
PaqCI	CACCTGC	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PctI	GAATGC	1 cut(s)	497
PdiI	GCCGGC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	4 cut(s)	160, 228, 271, 331
PleI	GAGTC	3 cut(s)	580, 601, 622
PpsI	GAGTC	3 cut(s)	580, 601, 622
Ppu21I	YACGTR	1 cut(s)	401
PshAI	GACNNNNGTC	1 cut(s)	212
PspFI	CCCAGC	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	135, 259
PspOMI	GGGCCC	1 cut(s)	257
PspPI	GGNCC	4 cut(s)	134, 214, 257, 258
PsuI	RGATCY	2 cut(s)	406, 451
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SatI	GCNGC	4 cut(s)	159, 227, 270, 330
Sau3AI	GATC	3 cut(s)	375, 406, 451
Sau96I	GGNCC	4 cut(s)	134, 214, 257, 258
SchI	GAGTC	3 cut(s)	581, 602, 623
ScrFI	CCNGG	4 cut(s)	166, 167, 251, 261
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	9 cut(s)	95, 178, 222, 246, 271, 403, 469, 568, 589
SinI	GGWCC	1 cut(s)	214
SmaI	CCCGGG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	393, 552
SsiI	CCGC	4 cut(s)	158, 179, 227, 346
StyD4I	CCNGG	4 cut(s)	164, 165, 249, 259
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	3 cut(s)	222, 246, 403
TasI	AATT	2 cut(s)	393, 552
TatI	WGTACW	1 cut(s)	337
TauI	GCSGC	2 cut(s)	161, 229
TfiI	GAWTC	1 cut(s)	299
TscAI	CASTG	2 cut(s)	33, 439
TseFI	GTSAC	2 cut(s)	280, 515
TseI	GCWGC	2 cut(s)	269, 329
Tsp45I	GTSAC	2 cut(s)	280, 515
TspMI	CCCGGG	1 cut(s)	165
TspRI	CASTG	2 cut(s)	33, 439
VpaK11BI	GGWCC	1 cut(s)	214
XmaI	CCCGGG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.