Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007298

Physical Location & Seq

Genomic Coordinates Reverse (-)

12155318 .. 12156782

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G087300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGGGTGATGGTGGCCATAGACGGAAGTGACGAGAGCCTCTATGCGCTCAAGTGGGCCCTTGACCTTCTTCTTGTGGGGCCTAAGGACAACGCCGATGATGTGGCTACAAGCACAGGCACGGCGACCCTGGAAGCACCTCATGCAGGGAGCCATGAGAATGTGAGCATGGTGACTCTGATTCATGTTATGCAGCCGTTCCAGAACTACGTCCTCCCTGCTGCTGGGTCTGCTGAATTGCGCAAGGAACAAGAAGAAAAGGCTGCTGCTATACTCGCCCGTGCTTTGGAGATTTGCAAGGATAAGATGATCAAAGCAGAAACCCTAATTCTACGTGGAGATCCGAAGGACAGGATTTGCGAAGCCACAGAGCAGAGGCATGTGGATCTTCTGGTTGTAGGTAGCCGTGGCCTTGGCATGGTCAAGAGAGCATTCTTAGGAAGCGTGAGTAGCTACTGTGCACATCATGCAAAATGCCCAGTTGTAATTGTGAAGCCACCCAAGGAGTCTGGAAAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

174

Amino Acids

18.7

Weight (kDa)

6.59

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11930 AT3G11930 AT3G11930 AT3G11930 AT3G58450 AT3G58450
fragaria_vesca	FvH4_6g21250
malus_domestica	MD14G1047700.v1.1 MD14G1047900.v1.1
prunus_persica	Prupe.7G087200_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477711
rosa_laevigata	RLG00000023696
rosa_multiflora	Rmu_co8357573.1_g000001 Rmu_sc0019064.1_g000001 Rmu_sc0019065.1_g000002
rosa_roxburghii	Rroxscaffold_6G00403730
rosa_rugosa	Rorug03G0162900
rosa_samantha	Rh3AG213100 Rh3BG246800 Rh3CG240600 Rh3DG239900
rosa_wichuraiana	Rw3G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	242
AclWI	GGATC	2 cut(s)	335, 393
AcoI	YGGCCR	1 cut(s)	15
AfiI	CCNNNNNNNGG	4 cut(s)	146, 224, 286, 418
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	1 cut(s)	453
AluI	AGCT	1 cut(s)	453
Alw21I	GWGCWC	1 cut(s)	463
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	2 cut(s)	335, 393
AoxI	GGCC	4 cut(s)	15, 57, 80, 409
ApaI	GGGCCC	1 cut(s)	61
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	4 cut(s)	193, 221, 263, 266
AspLEI	GCGC	2 cut(s)	49, 243
AspS9I	GGNCC	3 cut(s)	57, 58, 80
AsuHPI	GGTGA	2 cut(s)	19, 184
AxyI	CCTNAGG	1 cut(s)	84
BaeGI	GKGCMC	2 cut(s)	61, 463
BalI	TGGCCA	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	4 cut(s)	205, 208, 250, 253
BccI	CCATC	1 cut(s)	4
BceAI	ACGGC	3 cut(s)	138, 181, 390
BciT130I	CCWGG	1 cut(s)	131
BclI	TGATCA	1 cut(s)	309
BisI	GCNGC	4 cut(s)	194, 222, 264, 267
BlsI	GCNGC	4 cut(s)	195, 223, 265, 268
Bme1390I	CCNGG	1 cut(s)	131
BmgT120I	GGNCC	3 cut(s)	57, 58, 80
BmiI	GGNNCC	3 cut(s)	59, 81, 152
BmrFI	CCNGG	1 cut(s)	131
BmrI	ACTGGG	1 cut(s)	473
BmuI	ACTGGG	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	35
BsaAI	YACGTR	1 cut(s)	335
BsaJI	CCNNGG	4 cut(s)	129, 406, 412, 501
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 224, 286, 418
Bse1I	ACTGG	1 cut(s)	479
Bse21I	CCTNAGG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	4 cut(s)	129, 406, 412, 501
BseLI	CCNNNNNNNGG	4 cut(s)	146, 224, 286, 418
BseNI	ACTGG	1 cut(s)	479
BseSI	GKGCMC	2 cut(s)	61, 463
BseXI	GCAGC	4 cut(s)	205, 208, 250, 253
BseYI	CCCAGC	1 cut(s)	224
BshFI	GGCC	4 cut(s)	17, 59, 82, 411
BsiHKAI	GWGCWC	1 cut(s)	463
BslI	CCNNNNNNNGG	4 cut(s)	146, 224, 286, 418
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	4 cut(s)	17, 59, 82, 411
Bsp120I	GGGCCC	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	61, 463
Bsp143I	GATC	3 cut(s)	309, 340, 385
BspANI	GGCC	4 cut(s)	17, 59, 82, 411
BspLI	GGNNCC	3 cut(s)	59, 81, 152
BspPI	GGATC	2 cut(s)	335, 393
BsrI	ACTGG	1 cut(s)	479
BssECI	CCNNGG	4 cut(s)	129, 406, 412, 501
BssMI	GATC	3 cut(s)	309, 340, 385
BssT1I	CCWWGG	2 cut(s)	412, 501
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	458
BstAPI	GCANNNNNTGC	2 cut(s)	143, 467
BstBAI	YACGTR	1 cut(s)	335
BstDEI	CTNAG	2 cut(s)	84, 436
BstDSI	CCRYGG	1 cut(s)	406
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	49, 243
BstKTI	GATC	3 cut(s)	312, 343, 388
BstMBI	GATC	3 cut(s)	309, 340, 385
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 230, 275, 450, 467
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	129
BstSLI	GKGCMC	2 cut(s)	61, 463
BstV1I	GCAGC	4 cut(s)	205, 208, 250, 253
BstX2I	RGATCY	2 cut(s)	340, 385
BstYI	RGATCY	2 cut(s)	340, 385
Bsu36I	CCTNAGG	1 cut(s)	84
BsuRI	GGCC	4 cut(s)	17, 59, 82, 411
BtgI	CCRYGG	1 cut(s)	406
CfoI	GCGC	2 cut(s)	49, 243
Cfr13I	GGNCC	3 cut(s)	57, 58, 80
CviAII	CATG	7 cut(s)	143, 155, 169, 185, 380, 418, 467
DdeI	CTNAG	2 cut(s)	84, 436
DpnI	GATC	3 cut(s)	311, 342, 387
DpnII	GATC	3 cut(s)	309, 340, 385
EaeI	YGGCCR	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	412, 501
Eco24I	GRGCYC	1 cut(s)	61
Eco81I	CCTNAGG	1 cut(s)	84
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoO109I	RGGNCCY	2 cut(s)	58, 80
EcoRII	CCWGG	1 cut(s)	129
EcoT14I	CCWWGG	2 cut(s)	412, 501
EcoT38I	GRGCYC	1 cut(s)	61
ErhI	CCWWGG	2 cut(s)	412, 501
FaeI	CATG	7 cut(s)	146, 158, 172, 188, 383, 421, 470
FatI	CATG	7 cut(s)	142, 154, 168, 184, 379, 417, 466
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	4 cut(s)	194, 222, 264, 267
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	4 cut(s)	194, 222, 264, 267
FspI	TGCGCA	1 cut(s)	242
GlaI	GCGC	2 cut(s)	48, 242
GluI	GCNGC	4 cut(s)	194, 222, 264, 267
GsaI	CCCAGC	1 cut(s)	228
HaeIII	GGCC	4 cut(s)	17, 59, 82, 411
HhaI	GCGC	2 cut(s)	49, 243
Hin1II	CATG	7 cut(s)	146, 158, 172, 188, 383, 421, 470
Hin6I	GCGC	2 cut(s)	47, 241
HinP1I	GCGC	2 cut(s)	47, 241
HinfI	GANTC	3 cut(s)	175, 181, 506
HphI	GGTGA	2 cut(s)	19, 184
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	2 cut(s)	180, 345
Hpy188III	TCNNGA	3 cut(s)	202, 424, 510
Hpy8I	GTNNAC	1 cut(s)	461
HpyAV	CCTTC	2 cut(s)	77, 340
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4IV	ACGT	2 cut(s)	210, 334
HpyCH4V	TGCA	5 cut(s)	146, 193, 297, 461, 470
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 230, 275, 450, 467
HpyF3I	CTNAG	2 cut(s)	84, 436
HpySE526I	ACGT	2 cut(s)	210, 334
Hsp92II	CATG	7 cut(s)	146, 158, 172, 188, 383, 421, 470
HspAI	GCGC	2 cut(s)	47, 241
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	3 cut(s)	309, 340, 385
LmnI	GCTCC	1 cut(s)	150
Lsp1109I	GCAGC	4 cut(s)	205, 208, 250, 253
MaeII	ACGT	2 cut(s)	210, 334
MaeIII	GTNAC	2 cut(s)	29, 172
MalI	GATC	3 cut(s)	311, 342, 387
MboI	GATC	3 cut(s)	309, 340, 385
MboII	GAAGA	3 cut(s)	62, 266, 380
MflI	RGATCY	2 cut(s)	340, 385
MhlI	GDGCHC	2 cut(s)	61, 463
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	3 cut(s)	236, 327, 486
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	2 cut(s)	169, 515
MnlI	CCTC	4 cut(s)	50, 150, 224, 369
Mox20I	TGGCCA	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	17
MslI	CAYNNNNRTG	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	5 cut(s)	143, 230, 275, 450, 467
NdeII	GATC	3 cut(s)	309, 340, 385
NlaIII	CATG	7 cut(s)	146, 158, 172, 188, 383, 421, 470
NlaIV	GGNNCC	3 cut(s)	59, 81, 152
NmuCI	GTSAC	2 cut(s)	29, 172
NsbI	TGCGCA	1 cut(s)	242
NspI	RCATGY	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PctI	GAATGC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	4 cut(s)	195, 223, 265, 268
PleI	GAGTC	2 cut(s)	169, 514
PpsI	GAGTC	2 cut(s)	169, 514
Ppu21I	YACGTR	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	129
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	3 cut(s)	59, 81, 152
PspOMI	GGGCCC	1 cut(s)	57
PspPI	GGNCC	3 cut(s)	57, 58, 80
PsuI	RGATCY	2 cut(s)	340, 385
RseI	CAYNNNNRTG	1 cut(s)	159
SatI	GCNGC	4 cut(s)	194, 222, 264, 267
Sau3AI	GATC	3 cut(s)	309, 340, 385
Sau96I	GGNCC	3 cut(s)	57, 58, 80
SchI	GAGTC	2 cut(s)	169, 515
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	2 cut(s)	61, 463
SetI	ASST	6 cut(s)	69, 142, 213, 337, 403, 455
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	236, 327, 486
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	2 cut(s)	412, 501
TaaI	ACNGT	1 cut(s)	458
TaiI	ACGT	2 cut(s)	213, 337
TasI	AATT	3 cut(s)	236, 327, 486
TfiI	GAWTC	1 cut(s)	181
TseFI	GTSAC	2 cut(s)	29, 172
TseI	GCWGC	4 cut(s)	193, 221, 263, 266
Tsp45I	GTSAC	2 cut(s)	29, 172
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	39
VneI	GTGCAC	1 cut(s)	459
XagI	CCTNNNNNAGG	1 cut(s)	144
XceI	RCATGY	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.