Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007298

Physical Location & Seq

Genomic Coordinates Forward (+)

4551408 .. 4551836

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1047700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCAGACGACTACTACAACCGGCGCAGAGCGGCAGCCACCGGTGCAGAGCGGTGGTGACGATGATCGGAGGAAGAAGAAGATGAGGGTGATGGTGGCTATAGACGAGAGTGACTGGAGCTTCTATGCTCTTAAGTGGGCACTCGACCACCTCTTTGTTGTGGCTACAGACCAGGTGGCGATAAGCACGGGAACAGCGACGGTGGAAGCGGCGAGCCAGGAGAATGTGAGCATGATGACTCTGGTCCATGTCATGCAGCCGTTTCAGCACTACGTCCTCCCTGCCGGACCAGGTGCAACGGCGTTTTATGCAACACCGTCGGTATTGGAGTCTATTCGCAAAGCACAGGAAGAAAGTGCTGCCTCTGTTCTCTCTCGTGCTTTGGAGATATGCAACGAAAAGATGGTAATTAACTCGTTTGATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

143

Amino Acids

15.54

Weight (kDa)

5.09

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11930 AT3G11930 AT3G11930 AT3G11930 AT3G58450 AT3G58450
fragaria_vesca	FvH4_6g21250
malus_domestica	MD14G1047700.v1.1 MD14G1047900.v1.1
prunus_persica	Prupe.7G087200_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477711
rosa_laevigata	RLG00000023696
rosa_multiflora	Rmu_co8357573.1_g000001 Rmu_sc0019064.1_g000001 Rmu_sc0019065.1_g000002
rosa_roxburghii	Rroxscaffold_6G00403730
rosa_rugosa	Rorug03G0162900
rosa_samantha	Rh3AG213100 Rh3BG246800 Rh3CG240600 Rh3DG239900
rosa_wichuraiana	Rw3G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	31, 51
AciI	CCGC	3 cut(s)	31, 51, 209
AflII	CTTAAG	1 cut(s)	131
AgeI	ACCGGT	1 cut(s)	40
AjnI	CCWGG	3 cut(s)	171, 216, 289
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
ApeKI	GCWGC	3 cut(s)	34, 256, 359
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AsiGI	ACCGGT	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	244, 287
AsuHPI	GGTGA	2 cut(s)	68, 100
AvaII	GGWCC	2 cut(s)	244, 287
BaeGI	GKGCMC	1 cut(s)	142
BauI	CACGAG	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	46, 268, 346
BccI	CCATC	2 cut(s)	85, 397
BceAI	ACGGC	2 cut(s)	244, 315
BcgI	CGANNNNNNTGC	2 cut(s)	300, 334
BciT130I	CCWGG	3 cut(s)	173, 218, 291
BfmI	CTRYAG	2 cut(s)	99, 165
BfrI	CTTAAG	1 cut(s)	131
BisI	GCNGC	5 cut(s)	32, 35, 210, 257, 360
BlsI	GCNGC	5 cut(s)	33, 36, 211, 258, 361
Bme1390I	CCNGG	3 cut(s)	173, 218, 291
Bme18I	GGWCC	2 cut(s)	244, 287
BmgT120I	GGNCC	2 cut(s)	244, 287
BmrFI	CCNGG	3 cut(s)	173, 218, 291
BoxI	GACNNNNGTC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	136
BsaWI	WCCGGW	1 cut(s)	40
Bse118I	RCCGGY	2 cut(s)	20, 40
Bse1I	ACTGG	1 cut(s)	119
BseBI	CCWGG	3 cut(s)	173, 218, 291
BseNI	ACTGG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	3 cut(s)	46, 268, 346
BsgI	GTGCAG	1 cut(s)	65
BshTI	ACCGGT	1 cut(s)	40
BsiSI	CCGG	3 cut(s)	21, 41, 285
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	3 cut(s)	31, 51, 209
BspTI	CTTAAG	1 cut(s)	131
BsrBI	CCGCTC	2 cut(s)	31, 51
BsrFI	RCCGGY	2 cut(s)	20, 40
BsrI	ACTGG	1 cut(s)	119
BssAI	RCCGGY	2 cut(s)	20, 40
BssMI	GATC	1 cut(s)	64
BssSI	CACGAG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	375
Bst2UI	CCWGG	3 cut(s)	173, 218, 291
Bst4CI	ACNGT	2 cut(s)	202, 318
BstAFI	CTTAAG	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	214
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 265, 308
BstNI	CCWGG	3 cut(s)	173, 218, 291
BstPAI	GACNNNNGTC	1 cut(s)	242
BstSCI	CCNGG	3 cut(s)	171, 216, 289
BstSFI	CTRYAG	2 cut(s)	99, 165
BstSLI	GKGCMC	1 cut(s)	142
BstV1I	GCAGC	3 cut(s)	46, 268, 346
Cac8I	GCNNGC	1 cut(s)	214
CfoI	GCGC	1 cut(s)	26
Cfr10I	RCCGGY	2 cut(s)	20, 40
Cfr13I	GGNCC	2 cut(s)	244, 287
CsiI	ACCWGGT	2 cut(s)	171, 289
CspAI	ACCGGT	1 cut(s)	40
CviAII	CATG	3 cut(s)	232, 248, 253
CviJI	RGCY	6 cut(s)	37, 98, 120, 164, 216, 259
CviKI_1	RGCY	6 cut(s)	37, 98, 120, 164, 216, 259
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eco47I	GGWCC	2 cut(s)	244, 287
EcoRII	CCWGG	3 cut(s)	171, 216, 289
FaeI	CATG	3 cut(s)	235, 251, 256
FaiI	YATR	7 cut(s)	101, 126, 233, 249, 254, 309, 391
FatI	CATG	3 cut(s)	231, 247, 252
Fnu4HI	GCNGC	5 cut(s)	32, 35, 210, 257, 360
Fsp4HI	GCNGC	5 cut(s)	32, 35, 210, 257, 360
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	5 cut(s)	32, 35, 210, 257, 360
GsuI	CTGGAG	1 cut(s)	136
HapII	CCGG	3 cut(s)	21, 41, 285
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	3 cut(s)	235, 251, 256
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	2 cut(s)	238, 329
HpaII	CCGG	3 cut(s)	21, 41, 285
HphI	GGTGA	2 cut(s)	68, 100
Hpy188I	TCNGA	1 cut(s)	69
Hpy99I	CGWCG	2 cut(s)	202, 322
HpyCH4III	ACNGT	2 cut(s)	202, 318
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	6 cut(s)	4, 46, 256, 296, 311, 393
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 265, 308
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	3 cut(s)	235, 251, 256
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	117
Lsp1109I	GCAGC	3 cut(s)	46, 268, 346
MabI	ACCWGGT	2 cut(s)	171, 289
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	56, 110
MalI	GATC	1 cut(s)	66
MbiI	CCGCTC	2 cut(s)	31, 51
MboI	GATC	1 cut(s)	64
MboII	GAAGA	4 cut(s)	85, 88, 91, 362
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	1 cut(s)	408
MlyI	GAGTC	2 cut(s)	232, 338
MnlI	CCTC	5 cut(s)	63, 78, 161, 287, 373
MseI	TTAA	2 cut(s)	132, 411
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	3 cut(s)	21, 41, 285
MspR9I	CCNGG	3 cut(s)	173, 218, 291
MvaI	CCWGG	3 cut(s)	173, 218, 291
MwoI	GCNNNNNNNGC	3 cut(s)	43, 265, 308
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	235, 251, 256
NmuCI	GTSAC	2 cut(s)	56, 110
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PinAI	ACCGGT	1 cut(s)	40
PkrI	GCNGC	5 cut(s)	33, 36, 211, 258, 361
PleI	GAGTC	2 cut(s)	232, 337
PpsI	GAGTC	2 cut(s)	232, 337
PshAI	GACNNNNGTC	1 cut(s)	242
Psp6I	CCWGG	3 cut(s)	171, 216, 289
PspGI	CCWGG	3 cut(s)	171, 216, 289
PspPI	GGNCC	2 cut(s)	244, 287
SaqAI	TTAA	2 cut(s)	132, 411
SatI	GCNGC	5 cut(s)	32, 35, 210, 257, 360
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	2 cut(s)	244, 287
SchI	GAGTC	2 cut(s)	232, 338
ScrFI	CCNGG	3 cut(s)	173, 218, 291
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	5 cut(s)	122, 153, 177, 276, 295
SexAI	ACCWGGT	2 cut(s)	171, 289
SfcI	CTRYAG	2 cut(s)	99, 165
SgrAI	CRCCGGYG	1 cut(s)	40
SinI	GGWCC	2 cut(s)	244, 287
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	408
SsiI	CCGC	3 cut(s)	31, 51, 209
StyD4I	CCNGG	3 cut(s)	171, 216, 289
TaaI	ACNGT	2 cut(s)	202, 318
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	144
TasI	AATT	1 cut(s)	408
TauI	GCSGC	2 cut(s)	34, 212
Tru1I	TTAA	2 cut(s)	132, 411
Tru9I	TTAA	2 cut(s)	132, 411
TseFI	GTSAC	2 cut(s)	56, 110
TseI	GCWGC	3 cut(s)	34, 256, 359
Tsp45I	GTSAC	2 cut(s)	56, 110
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	244, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.