MD14G1047900.v1.1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0007298
Physical Location & Seq
Forward (+)
4590756 .. 4591581
826 bp
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UTR
Exon/CDS
Intron
MD14G1047900.v1.1.491

Sequence Viewer

Length: 165 bp
ATGACTTGCGAGGCCGCAGAGCAGATGCATGTAGATCTTCTTGTCGTAGGTAGTCGTGGCCTTGGCGCACACATAATTGGGAACTTTAATGTAAAGTTCTTGACACATCATGCAACATGCCCAGTTGTGATCGTGAAACCACCAAAGGAGTCTGCAGGAAAATAA

Protein Analysis

55

Amino Acids

5.75

Weight (kDa)

7.87

Isoelectric Point (pI)

30.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 2 - 46 8.2e-08 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 15
AoxI GGCC 2 cut(s) 12, 58
AspLEI GCGC 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 153
BglII AGATCT 1 cut(s) 34
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 15
BmuI ACTGGG 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 122
BshFI GGCC 2 cut(s) 14, 60
BsnI GGCC 2 cut(s) 14, 60
Bsp143I GATC 2 cut(s) 34, 129
BspACI CCGC 1 cut(s) 15
BspANI GGCC 2 cut(s) 14, 60
BspMAI CTGCAG 1 cut(s) 157
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 2 cut(s) 34, 129
BssT1I CCWWGG 1 cut(s) 61
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 2 cut(s) 37, 132
BstMBI GATC 2 cut(s) 34, 129
BstNSI RCATGY 2 cut(s) 32, 120
BstSFI CTRYAG 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuRI GGCC 2 cut(s) 14, 60
CfoI GCGC 1 cut(s) 68
CviAII CATG 3 cut(s) 29, 110, 117
CviJI RGCY 2 cut(s) 14, 60
CviKI_1 RGCY 2 cut(s) 14, 60
DpnI GATC 2 cut(s) 36, 131
DpnII GATC 2 cut(s) 34, 129
Eco130I CCWWGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 61
EcoT22I ATGCAT 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 3 cut(s) 32, 113, 120
FaiI YATR 4 cut(s) 30, 74, 111, 118
FatI CATG 3 cut(s) 28, 109, 116
Fnu4HI GCNGC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 15
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 2 cut(s) 14, 60
HhaI GCGC 1 cut(s) 68
Hin1II CATG 3 cut(s) 32, 113, 120
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HinfI GANTC 1 cut(s) 149
Hpy188III TCNNGA 2 cut(s) 100, 133
HpyCH4V TGCA 3 cut(s) 28, 113, 155
Hsp92II CATG 3 cut(s) 32, 113, 120
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 2 cut(s) 34, 129
LpnPI CCDG 2 cut(s) 135, 141
LweI GCATC 1 cut(s) 15
MalI GATC 2 cut(s) 36, 131
MboI GATC 2 cut(s) 34, 129
MboII GAAGA 1 cut(s) 29
MflI RGATCY 1 cut(s) 34
MluCI AATT 1 cut(s) 75
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 1 cut(s) 4
Mph1103I ATGCAT 1 cut(s) 30
MseI TTAA 1 cut(s) 87
NdeII GATC 2 cut(s) 34, 129
NlaIII CATG 3 cut(s) 32, 113, 120
NsiI ATGCAT 1 cut(s) 30
NspI RCATGY 2 cut(s) 32, 120
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 34
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 2 cut(s) 34, 129
SchI GAGTC 1 cut(s) 158
SetI ASST 1 cut(s) 52
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 153
Sse9I AATT 1 cut(s) 75
SsiI CCGC 1 cut(s) 15
StyI CCWWGG 1 cut(s) 61
TasI AATT 1 cut(s) 75
TauI GCSGC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
XceI RCATGY 2 cut(s) 32, 120
Zsp2I ATGCAT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.