AT3G58450

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007298
Physical Location & Seq
Forward (+)
21621994 .. 21623166
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58450.2

Sequence Viewer

Length: 615 bp
ATGGAGACTTACGTTGATGCGATTGGAGAGGACACGGCAGCCACAACAACGACGGCGGAGACGGCTGCAAATAAGAACAAGAAGAAGTTGAAAGTGATGGTTGCGATTGATGAGAGCAAGAACAGCTTCGATGCGTTGGAATGGGCTGTGGATCATCTCAGAGTTGTTATTAGTGCCGAACCGGAAACCGGTCAAGAAGGCGGTTTACTTACGTTGCTTCATGTTCACCCAACGTACCTTCAATATATCTATCCTTCTGGTGGAACTGCTTCGGCGGTGTATGCGACAGATTCAGTGCCCGAACCAATGAGGAAAGCACGAGAAGAGAGTACGACAAACTTATTCACACGGGCATTGGAGATATGCCGAGGCAAAATGGTGAAGACAGAGACTATGATATTGGAAGGAGATCCTAAGGAGATGATATGCCAAGCCGTCGAGCAAACACATGTTGATCTTCTTGTTGTTGGTAGCCGTGGACTCGGCATGATCAAAAGGGCATTTTTAGGGAGTGTAAGTGACTACTGTGCCCAACATGCAAAATGTCCAATTCTCATTGTGCGACCGCCTAGAGAAACCTCAACTAGTAACACGAAGGAACACAAGAGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

204

Amino Acids

22.37

Weight (kDa)

6.09

Isoelectric Point (pI)

29.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 31 - 181 1e-32 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 56, 201, 275, 566
AclWI GGATC 2 cut(s) 159, 404
AfaI GTAC 2 cut(s) 236, 331
AfiI CCNNNNNNNGG 2 cut(s) 188, 260
AflIII ACRYGT 1 cut(s) 448
AgeI ACCGGT 1 cut(s) 188
AgsI TTSAA 2 cut(s) 91, 242
AhlI ACTAGT 1 cut(s) 584
AluBI AGCT 1 cut(s) 126
AluI AGCT 1 cut(s) 126
Alw26I GTCTC 2 cut(s) 53, 383
AlwI GGATC 2 cut(s) 159, 404
ApeKI GCWGC 2 cut(s) 38, 65
AsiGI ACCGGT 1 cut(s) 188
Asp700I GAANNNNTTC 2 cut(s) 125, 268
AsuHPI GGTGA 2 cut(s) 218, 391
AxyI CCTNAGG 1 cut(s) 414
BaeGI GKGCMC 2 cut(s) 300, 532
BarI GAAGNNNNNNTAC 2 cut(s) 189, 221
BauI CACGAG 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 389
BbvI GCAGC 2 cut(s) 50, 52
BccI CCATC 1 cut(s) 91
BceAI ACGGC 5 cut(s) 51, 69, 78, 419, 459
BclI TGATCA 1 cut(s) 489
BcoDI GTCTC 2 cut(s) 53, 383
BcuI ACTAGT 1 cut(s) 584
BfaI CTAG 2 cut(s) 570, 585
BisI GCNGC 2 cut(s) 39, 66
BlsI GCNGC 2 cut(s) 40, 67
BmsI GCATC 2 cut(s) 7, 121
BpiI GAAGAC 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 367, 475
BsaWI WCCGGW 2 cut(s) 181, 188
BsaXI ACNNNNNCTCC 2 cut(s) 502, 532
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 260
Bse118I RCCGGY 1 cut(s) 188
Bse21I CCTNAGG 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 367, 475
BseLI CCNNNNNNNGG 2 cut(s) 188, 260
BseMII CTCAG 1 cut(s) 172
BseSI GKGCMC 2 cut(s) 300, 532
BseXI GCAGC 2 cut(s) 50, 52
Bsh1285I CGRYCG 1 cut(s) 566
BshTI ACCGGT 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 566
BsiSI CCGG 2 cut(s) 182, 189
BslI CCNNNNNNNGG 2 cut(s) 188, 260
BsmAI GTCTC 2 cut(s) 53, 383
BsmBI CGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 2 cut(s) 300, 532
Bsp143I GATC 4 cut(s) 151, 409, 454, 489
BspACI CCGC 4 cut(s) 56, 201, 275, 566
BspCNI CTCAG 1 cut(s) 171
BspPI GGATC 2 cut(s) 159, 404
BsrFI RCCGGY 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 367, 475
BssMI GATC 4 cut(s) 151, 409, 454, 489
BssSI CACGAG 1 cut(s) 318
Bst2BI CACGAG 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 527
Bst6I CTCTTC 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 158, 414
BstDSI CCRYGG 1 cut(s) 475
BstKTI GATC 4 cut(s) 154, 412, 457, 492
BstMAI GTCTC 2 cut(s) 53, 383
BstMBI GATC 4 cut(s) 151, 409, 454, 489
BstMCI CGRYCG 1 cut(s) 566
BstMWI GCNNNNNNNGC 4 cut(s) 62, 123, 281, 536
BstNSI RCATGY 2 cut(s) 452, 539
BstSLI GKGCMC 2 cut(s) 300, 532
BstV1I GCAGC 2 cut(s) 50, 52
BstV2I GAAGAC 1 cut(s) 389
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
Bsu36I CCTNAGG 1 cut(s) 414
BtgI CCRYGG 1 cut(s) 475
BtsIMutI CAGTG 1 cut(s) 300
Cfr10I RCCGGY 1 cut(s) 188
Csp6I GTAC 2 cut(s) 235, 330
CspAI ACCGGT 1 cut(s) 188
CviAII CATG 4 cut(s) 221, 449, 487, 536
CviJI RGCY 6 cut(s) 41, 65, 126, 146, 434, 474
CviKI_1 RGCY 6 cut(s) 41, 65, 126, 146, 434, 474
CviQI GTAC 2 cut(s) 235, 330
DdeI CTNAG 2 cut(s) 158, 414
DpnI GATC 4 cut(s) 153, 411, 456, 491
DpnII GATC 4 cut(s) 151, 409, 454, 489
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
EciI GGCGGA 1 cut(s) 71
Eco81I CCTNAGG 1 cut(s) 414
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 4 cut(s) 224, 452, 490, 539
FaiI YATR 9 cut(s) 222, 246, 282, 364, 395, 427, 450, 488, 537
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 4 cut(s) 220, 448, 486, 535
FbaI TGATCA 1 cut(s) 489
Fnu4HI GCNGC 2 cut(s) 39, 66
Fsp4HI GCNGC 2 cut(s) 39, 66
FspBI CTAG 2 cut(s) 570, 585
GluI GCNGC 2 cut(s) 39, 66
HapII CCGG 2 cut(s) 182, 189
Hin1II CATG 4 cut(s) 224, 452, 490, 539
HinfI GANTC 2 cut(s) 290, 480
HpaII CCGG 2 cut(s) 182, 189
HphI GGTGA 2 cut(s) 218, 391
Hpy166II GTNNAC 3 cut(s) 206, 226, 479
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 3 cut(s) 206, 226, 479
Hpy99I CGWCG 2 cut(s) 55, 440
HpyAV CCTTC 5 cut(s) 191, 248, 264, 398, 589
HpyCH4III ACNGT 1 cut(s) 527
HpyCH4IV ACGT 3 cut(s) 12, 212, 233
HpyCH4V TGCA 2 cut(s) 68, 539
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 123, 281, 536
HpyF3I CTNAG 2 cut(s) 158, 414
HpySE526I ACGT 3 cut(s) 12, 212, 233
Hsp92II CATG 4 cut(s) 224, 452, 490, 539
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 4 cut(s) 151, 409, 454, 489
LpnPI CCDG 3 cut(s) 195, 202, 243
Lsp1109I GCAGC 2 cut(s) 50, 52
LweI GCATC 2 cut(s) 7, 121
MaeI CTAG 2 cut(s) 570, 585
MaeII ACGT 3 cut(s) 12, 212, 233
MaeIII GTNAC 2 cut(s) 518, 587
MalI GATC 4 cut(s) 153, 411, 456, 491
MboI GATC 4 cut(s) 151, 409, 454, 489
MboII GAAGA 4 cut(s) 94, 335, 394, 449
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 2 cut(s) 300, 532
MluCI AATT 1 cut(s) 549
MlyI GAGTC 1 cut(s) 474
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 4 cut(s) 22, 303, 362, 589
MroXI GAANNNNTTC 2 cut(s) 125, 268
MspI CCGG 2 cut(s) 182, 189
MwoI GCNNNNNNNGC 4 cut(s) 62, 123, 281, 536
NdeII GATC 4 cut(s) 151, 409, 454, 489
NlaIII CATG 4 cut(s) 224, 452, 490, 539
NmeAIII GCCGAG 2 cut(s) 392, 462
NmuCI GTSAC 1 cut(s) 518
NspI RCATGY 2 cut(s) 452, 539
PciI ACATGT 1 cut(s) 448
PdmI GAANNNNTTC 2 cut(s) 125, 268
PfeI GAWTC 1 cut(s) 290
PinAI ACCGGT 1 cut(s) 188
PkrI GCNGC 2 cut(s) 40, 67
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
PscI ACATGT 1 cut(s) 448
PsuI RGATCY 1 cut(s) 409
RsaI GTAC 2 cut(s) 236, 331
RsaNI GTAC 2 cut(s) 235, 330
SatI GCNGC 2 cut(s) 39, 66
Sau3AI GATC 4 cut(s) 151, 409, 454, 489
SchI GAGTC 1 cut(s) 474
SduI GDGCHC 2 cut(s) 300, 532
SetI ASST 6 cut(s) 15, 128, 215, 236, 240, 581
SfaNI GCATC 2 cut(s) 7, 121
SpeI ACTAGT 1 cut(s) 584
Sse9I AATT 1 cut(s) 549
SsiI CCGC 4 cut(s) 56, 201, 275, 566
SspMI CTAG 2 cut(s) 570, 585
TaaI ACNGT 1 cut(s) 527
TaiI ACGT 3 cut(s) 15, 215, 236
TaqI TCGA 2 cut(s) 129, 438
TasI AATT 1 cut(s) 549
TfiI GAWTC 1 cut(s) 290
TscAI CASTG 1 cut(s) 300
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 2 cut(s) 38, 65
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 1 cut(s) 209
TspRI CASTG 1 cut(s) 300
XceI RCATGY 2 cut(s) 452, 539
XmnI GAANNNNTTC 2 cut(s) 125, 268
XspI CTAG 2 cut(s) 570, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.