Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019065.1

Orthogroup ID

OG0007298

Physical Location & Seq

Genomic Coordinates Forward (+)

2011 .. 3268

Gene Structure 1258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019065.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgactgccacgcacacaaaccagccatggccaagtttcgtcaagggctcaaggcaccaccacgtagccaccaagtctaaacccaaaagcaccgatcatcatccctatctccaaaaccctcaaaaccacgtgaaggagccctcaggaaaaacaaacccagaatccatctgtcacaaactcacccaatttatatacaccagaaaccaacctgagcgaccacaccaatctctaataatggagaccacatacgcagctcccggtaccacagtgcagacgaccccattggtgcacgttggggatgagggactgagaagaacgaagatgagggtgatggtcgccatcgacgaaagcgactcgagcttctacgcgctcaactgggcgcttgaccacctctttatcaacgcgccgagtactctggaaggcggcgagggggaaggggggatggtgaaggtggtccacgtcacgcagccgtttcagcactttgtgtaccctgccggacctgccggagcaacctattatgcatccgcgtcggtggtggagtcggtgaagaaagctcagcaggagaattctgctgccattctctcccgcgctatgcagatttgcaaggataggatgatcaaagcagaaactctgactctgactggagatccaaaggacatgatttgtcaagccacagagcagatgcatgtagatcttcttgttgttggtagtcgtggcctgggcatggtcaagagagcattcctagggagtgtgagcgactactgcgcacatcatgcatcatgtccagtcatgattgtaaagccaccaagggggtctggagcaaaggggtctgcatcatctaaaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

282

Amino Acids

30.8

Weight (kDa)

9.12

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11930 AT3G11930 AT3G11930 AT3G11930 AT3G58450 AT3G58450
fragaria_vesca	FvH4_6g21250
malus_domestica	MD14G1047700.v1.1 MD14G1047900.v1.1
prunus_persica	Prupe.7G087200_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477711
rosa_laevigata	RLG00000023696
rosa_multiflora	Rmu_co8357573.1_g000001 Rmu_sc0019064.1_g000001 Rmu_sc0019065.1_g000002
rosa_roxburghii	Rroxscaffold_6G00403730
rosa_rugosa	Rorug03G0162900
rosa_samantha	Rh3AG213100 Rh3BG246800 Rh3CG240600 Rh3DG239900
rosa_wichuraiana	Rw3G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	766
Acc36I	ACCTGC	1 cut(s)	508
Acc65I	GGTACC	1 cut(s)	260
AccB1I	GGYRCC	2 cut(s)	54, 260
AccII	CGCG	4 cut(s)	368, 404, 527, 588
AciI	CCGC	3 cut(s)	423, 525, 586
AclWI	GGATC	1 cut(s)	641
AcoI	YGGCCR	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	565
AcvI	CACGTG	1 cut(s)	130
AdeI	CACNNNGTG	1 cut(s)	484
AfaI	GTAC	3 cut(s)	262, 412, 488
AfiI	CCNNNNNNNGG	3 cut(s)	133, 724, 809
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	717
AluBI	AGCT	3 cut(s)	254, 360, 554
AluI	AGCT	3 cut(s)	254, 360, 554
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	233
Alw44I	GTGCAC	1 cut(s)	287
AlwI	GGATC	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	355
AoxI	GGCC	2 cut(s)	29, 715
ApaLI	GTGCAC	1 cut(s)	287
ApeKI	GCWGC	3 cut(s)	251, 466, 572
ApoI	RAATTY	1 cut(s)	565
Asp718I	GGTACC	1 cut(s)	260
AspA2I	CCTAGG	1 cut(s)	742
AspLEI	GCGC	5 cut(s)	370, 382, 406, 590, 767
AspS9I	GGNCC	2 cut(s)	454, 497
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	4 cut(s)	172, 340, 457, 556
AvaI	CYCGRG	1 cut(s)	355
AvaII	GGWCC	2 cut(s)	454, 497
AvrII	CCTAGG	1 cut(s)	742
AxyI	CCTNAGG	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	291
BaeI	ACNNNNGTAYC	2 cut(s)	252, 285
BalI	TGGCCA	1 cut(s)	31
BanI	GGYRCC	2 cut(s)	54, 260
BanII	GRGCYC	2 cut(s)	50, 141
BbrPI	CACGTG	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	263, 478, 559
BccI	CCATC	4 cut(s)	173, 325, 347, 436
BceAI	ACGGC	1 cut(s)	454
BcgI	CGANNNNNNTGC	2 cut(s)	510, 544
BciT130I	CCWGG	1 cut(s)	719
BclI	TGATCA	1 cut(s)	615
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	743
BfoI	RGCGCY	1 cut(s)	383
BfuAI	ACCTGC	1 cut(s)	508
BglII	AGATCT	1 cut(s)	691
BisI	GCNGC	4 cut(s)	252, 424, 467, 573
BlnI	CCTAGG	1 cut(s)	742
BlpI	GCTNAGC	1 cut(s)	555
BlsI	GCNGC	4 cut(s)	253, 425, 468, 574
BmcAI	AGTACT	1 cut(s)	412
Bme1390I	CCNGG	2 cut(s)	258, 719
Bme18I	GGWCC	2 cut(s)	454, 497
BmeT110I	CYCGRG	1 cut(s)	355
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	454, 497
BmiI	GGNNCC	3 cut(s)	56, 138, 262
BmrFI	CCNGG	2 cut(s)	258, 719
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	4 cut(s)	530, 672, 785, 842
BmuI	ACTGGG	1 cut(s)	385
BpmI	CTGGAG	2 cut(s)	663, 837
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	258
BsaAI	YACGTR	2 cut(s)	64, 130
BsaBI	GATNNNNATC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	4 cut(s)	26, 718, 742, 806
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 724, 809
Bse1I	ACTGG	3 cut(s)	380, 646, 785
Bse21I	CCTNAGG	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	719
BseDI	CCNNGG	4 cut(s)	26, 718, 742, 806
BseGI	GGATG	5 cut(s)	100, 304, 447, 521, 618
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	3 cut(s)	133, 724, 809
BseMII	CTCAG	4 cut(s)	156, 201, 299, 569
BseNI	ACTGG	3 cut(s)	380, 646, 785
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	3 cut(s)	263, 478, 559
BsgI	GTGCAG	1 cut(s)	290
Bsh1236I	CGCG	4 cut(s)	368, 404, 527, 588
BshFI	GGCC	2 cut(s)	31, 717
BshNI	GGYRCC	2 cut(s)	54, 260
BsiHKAI	GWGCWC	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	355
BsiSI	CCGG	3 cut(s)	258, 495, 504
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	3 cut(s)	133, 724, 809
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	737
BsnI	GGCC	2 cut(s)	31, 717
Bso31I	GGTCTC	1 cut(s)	233
BsoBI	CYCGRG	1 cut(s)	355
Bsp1286I	GDGCHC	3 cut(s)	50, 141, 291
Bsp143I	GATC	4 cut(s)	94, 615, 646, 691
Bsp1720I	GCTNAGC	1 cut(s)	555
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	3 cut(s)	423, 525, 586
BspANI	GGCC	2 cut(s)	31, 717
BspCNI	CTCAG	4 cut(s)	155, 202, 300, 568
BspFNI	CGCG	4 cut(s)	368, 404, 527, 588
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	3 cut(s)	56, 138, 262
BspMI	ACCTGC	1 cut(s)	508
BspPI	GGATC	1 cut(s)	641
BspT107I	GGYRCC	2 cut(s)	54, 260
BspTNI	GGTCTC	1 cut(s)	233
BsrI	ACTGG	3 cut(s)	380, 646, 785
BssECI	CCNNGG	4 cut(s)	26, 718, 742, 806
BssMI	GATC	4 cut(s)	94, 615, 646, 691
BssT1I	CCWWGG	3 cut(s)	26, 742, 806
Bst2UI	CCWGG	1 cut(s)	719
Bst4CI	ACNGT	1 cut(s)	268
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstBAI	YACGTR	2 cut(s)	64, 130
BstDEI	CTNAG	4 cut(s)	142, 210, 308, 555
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	5 cut(s)	100, 304, 447, 521, 618
BstFNI	CGCG	4 cut(s)	368, 404, 527, 588
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	5 cut(s)	370, 382, 406, 590, 767
BstKTI	GATC	4 cut(s)	97, 618, 649, 694
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	4 cut(s)	94, 615, 646, 691
BstMWI	GCNNNNNNNGC	5 cut(s)	357, 475, 500, 762, 773
BstNI	CCWGG	1 cut(s)	719
BstNSI	RCATGY	1 cut(s)	689
BstSCI	CCNGG	2 cut(s)	256, 717
BstSLI	GKGCMC	1 cut(s)	291
BstUI	CGCG	4 cut(s)	368, 404, 527, 588
BstV1I	GCAGC	3 cut(s)	263, 478, 559
BstX2I	RGATCY	2 cut(s)	646, 691
BstYI	RGATCY	2 cut(s)	646, 691
Bsu36I	CCTNAGG	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	31, 717
BtgI	CCRYGG	1 cut(s)	26
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	5 cut(s)	100, 304, 447, 521, 618
BtsIMutI	CAGTG	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	508
CciI	TCATGA	1 cut(s)	789
CfoI	GCGC	5 cut(s)	370, 382, 406, 590, 767
Cfr13I	GGNCC	2 cut(s)	454, 497
CseI	GACGC	1 cut(s)	516
Csp6I	GTAC	3 cut(s)	261, 411, 487
CviAII	CATG	7 cut(s)	27, 658, 686, 724, 773, 780, 790
CviQI	GTAC	3 cut(s)	261, 411, 487
DdeI	CTNAG	4 cut(s)	142, 210, 308, 555
DpnI	GATC	4 cut(s)	96, 617, 648, 693
DpnII	GATC	4 cut(s)	94, 615, 646, 691
DraIII	CACNNNGTG	1 cut(s)	484
EaeI	YGGCCR	1 cut(s)	29
Eco130I	CCWWGG	3 cut(s)	26, 742, 806
Eco24I	GRGCYC	2 cut(s)	50, 141
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	454, 497
Eco72I	CACGTG	1 cut(s)	130
Eco81I	CCTNAGG	1 cut(s)	142
Eco88I	CYCGRG	1 cut(s)	355
EcoRI	GAATTC	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	717
EcoT14I	CCWWGG	3 cut(s)	26, 742, 806
EcoT22I	ATGCAT	3 cut(s)	523, 687, 778
EcoT38I	GRGCYC	2 cut(s)	50, 141
ErhI	CCWWGG	3 cut(s)	26, 742, 806
FaeI	CATG	7 cut(s)	30, 661, 689, 727, 776, 783, 793
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	7 cut(s)	26, 657, 685, 723, 772, 779, 789
FauI	CCCGC	1 cut(s)	593
FbaI	TGATCA	1 cut(s)	615
Fnu4HI	GCNGC	4 cut(s)	252, 424, 467, 573
FokI	GGATG	5 cut(s)	87, 311, 454, 508, 625
FriOI	GRGCYC	2 cut(s)	50, 141
Fsp4HI	GCNGC	4 cut(s)	252, 424, 467, 573
FspBI	CTAG	1 cut(s)	743
FspI	TGCGCA	1 cut(s)	766
GlaI	GCGC	5 cut(s)	369, 381, 405, 589, 766
GluI	GCNGC	4 cut(s)	252, 424, 467, 573
GsuI	CTGGAG	2 cut(s)	663, 837
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	2 cut(s)	31, 717
HapII	CCGG	3 cut(s)	258, 495, 504
HgaI	GACGC	1 cut(s)	516
HhaI	GCGC	5 cut(s)	370, 382, 406, 590, 767
Hin1II	CATG	7 cut(s)	30, 661, 689, 727, 776, 783, 793
Hin6I	GCGC	5 cut(s)	368, 380, 404, 588, 765
HinP1I	GCGC	5 cut(s)	368, 380, 404, 588, 765
HinfI	GANTC	4 cut(s)	161, 353, 539, 634
HpaII	CCGG	3 cut(s)	258, 495, 504
HphI	GGTGA	4 cut(s)	172, 340, 457, 556
Hpy166II	GTNNAC	3 cut(s)	289, 457, 487
Hpy188I	TCNGA	2 cut(s)	633, 639
Hpy188III	TCNNGA	5 cut(s)	144, 416, 730, 790, 816
Hpy8I	GTNNAC	3 cut(s)	289, 457, 487
Hpy99I	CGWCG	2 cut(s)	347, 532
HpyAV	CCTTC	4 cut(s)	127, 413, 428, 442
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	4 cut(s)	63, 129, 291, 459
HpyCH4V	TGCA	8 cut(s)	271, 289, 521, 595, 603, 685, 776, 833
HpyF10VI	GCNNNNNNNGC	5 cut(s)	357, 475, 500, 762, 773
HpyF3I	CTNAG	4 cut(s)	142, 210, 308, 555
HpySE526I	ACGT	4 cut(s)	63, 129, 291, 459
Hsp92II	CATG	7 cut(s)	30, 661, 689, 727, 776, 783, 793
HspAI	GCGC	5 cut(s)	368, 380, 404, 588, 765
KpnI	GGTACC	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	615
Kzo9I	GATC	4 cut(s)	94, 615, 646, 691
LmnI	GCTCC	4 cut(s)	136, 259, 506, 818
Lsp1109I	GCAGC	3 cut(s)	263, 478, 559
LweI	GCATC	4 cut(s)	530, 672, 785, 842
MaeI	CTAG	1 cut(s)	743
MaeII	ACGT	4 cut(s)	63, 129, 291, 459
MaeIII	GTNAC	2 cut(s)	170, 460
MalI	GATC	4 cut(s)	96, 617, 648, 693
MboI	GATC	4 cut(s)	94, 615, 646, 691
MboII	GAAGA	4 cut(s)	324, 331, 559, 686
MflI	RGATCY	2 cut(s)	646, 691
MhlI	GDGCHC	3 cut(s)	50, 141, 291
MlsI	TGGCCA	1 cut(s)	31
MluCI	AATT	2 cut(s)	185, 565
MluNI	TGGCCA	1 cut(s)	31
MlyI	GAGTC	3 cut(s)	347, 548, 628
MnlI	CCTC	6 cut(s)	129, 151, 295, 318, 401, 421
Mox20I	TGGCCA	1 cut(s)	31
Mph1103I	ATGCAT	3 cut(s)	523, 687, 778
MscI	TGGCCA	1 cut(s)	31
Msp20I	TGGCCA	1 cut(s)	31
MspI	CCGG	3 cut(s)	258, 495, 504
MspR9I	CCNGG	2 cut(s)	258, 719
Mva1269I	GAATGC	1 cut(s)	737
MvaI	CCWGG	1 cut(s)	719
MvnI	CGCG	4 cut(s)	368, 404, 527, 588
MwoI	GCNNNNNNNGC	5 cut(s)	357, 475, 500, 762, 773
NciI	CCSGG	1 cut(s)	258
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	4 cut(s)	94, 615, 646, 691
NlaIII	CATG	7 cut(s)	30, 661, 689, 727, 776, 783, 793
NlaIV	GGNNCC	3 cut(s)	56, 138, 262
NmeAIII	GCCGAG	1 cut(s)	432
NmuCI	GTSAC	2 cut(s)	170, 460
NsbI	TGCGCA	1 cut(s)	766
NsiI	ATGCAT	3 cut(s)	523, 687, 778
NspI	RCATGY	1 cut(s)	689
PaeR7I	CTCGAG	1 cut(s)	355
PagI	TCATGA	1 cut(s)	789
PcsI	WCGNNNNNNNCGW	2 cut(s)	342, 348
PctI	GAATGC	1 cut(s)	737
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	253, 425, 468, 574
PleI	GAGTC	3 cut(s)	347, 547, 628
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
PpsI	GAGTC	3 cut(s)	347, 547, 628
Ppu21I	YACGTR	2 cut(s)	64, 130
Psp6I	CCWGG	1 cut(s)	717
PspCI	CACGTG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	717
PspN4I	GGNNCC	3 cut(s)	56, 138, 262
PspPI	GGNCC	2 cut(s)	454, 497
PspXI	VCTCGAGB	1 cut(s)	355
PsuI	RGATCY	2 cut(s)	646, 691
RsaI	GTAC	3 cut(s)	262, 412, 488
RsaNI	GTAC	3 cut(s)	261, 411, 487
SatI	GCNGC	4 cut(s)	252, 424, 467, 573
Sau3AI	GATC	4 cut(s)	94, 615, 646, 691
Sau96I	GGNCC	2 cut(s)	454, 497
ScaI	AGTACT	1 cut(s)	412
SchI	GAGTC	3 cut(s)	347, 548, 628
ScrFI	CCNGG	2 cut(s)	258, 719
SduI	GDGCHC	3 cut(s)	50, 141, 291
SfaNI	GCATC	4 cut(s)	530, 672, 785, 842
Sfr274I	CTCGAG	1 cut(s)	355
SinI	GGWCC	2 cut(s)	454, 497
SlaI	CTCGAG	1 cut(s)	355
SmlI	CTYRAG	2 cut(s)	49, 355
SmoI	CTYRAG	2 cut(s)	49, 355
Sse9I	AATT	2 cut(s)	185, 565
SsiI	CCGC	3 cut(s)	423, 525, 586
SspMI	CTAG	1 cut(s)	743
StyD4I	CCNGG	2 cut(s)	256, 717
StyI	CCWWGG	3 cut(s)	26, 742, 806
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	4 cut(s)	66, 132, 294, 462
TaqI	TCGA	2 cut(s)	342, 356
TasI	AATT	2 cut(s)	185, 565
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	161
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	2 cut(s)	170, 460
TseI	GCWGC	3 cut(s)	251, 466, 572
Tsp45I	GTSAC	2 cut(s)	170, 460
TspRI	CASTG	1 cut(s)	273
VneI	GTGCAC	1 cut(s)	287
VpaK11BI	GGWCC	2 cut(s)	454, 497
XapI	RAATTY	1 cut(s)	565
XceI	RCATGY	1 cut(s)	689
XhoI	CTCGAG	1 cut(s)	355
XmaJI	CCTAGG	1 cut(s)	742
XspI	CTAG	1 cut(s)	743
ZrmI	AGTACT	1 cut(s)	412
Zsp2I	ATGCAT	3 cut(s)	523, 687, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.