Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007298

Physical Location & Seq

Genomic Coordinates Reverse (-)

26200179 .. 26201521

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTGACGGTGGTCCACGTCACGCAGCCGTTTCAGCACTTTGTGTACCCTGCCGGACCTGGCGGAGCAACCTATTATGCATCCGCGTCGGTGGTGGAGTCGGTGAAGAAAGCTCAGCAGGAGAATTCTGCTGCCATTCTCTCCCGCGCTATGCAGATTTGCAAGGATAGGATGATCAAAGCAGAAACTTTGACTCTGACTGGAGATCCAAAGGACATGATTTGTCAAGCCACGGAGCAGATGCATGTAGATCTTCTTGTTGTGGGTAGTCGTGGCCTGGGCATGGTCAAGAGAGCATTCCTAGGAAGTGTGAGCGACTACTGCGCACATCATGCAGCATGTCCAGTCATGATTGTAAAGCCACCAAGGGGGTCTGGAGCAAAGGGGTCCGCATCATCTAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

135

Amino Acids

14.34

Weight (kDa)

9.3

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	23 - 120	3.8e-23	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11930 AT3G11930 AT3G11930 AT3G11930 AT3G58450 AT3G58450
fragaria_vesca	FvH4_6g21250
malus_domestica	MD14G1047700.v1.1 MD14G1047900.v1.1
prunus_persica	Prupe.7G087200_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477711
rosa_laevigata	RLG00000023696
rosa_multiflora	Rmu_co8357573.1_g000001 Rmu_sc0019064.1_g000001 Rmu_sc0019065.1_g000002
rosa_roxburghii	Rroxscaffold_6G00403730
rosa_rugosa	Rorug03G0162900
rosa_samantha	Rh3AG213100 Rh3BG246800 Rh3CG240600 Rh3DG239900
rosa_wichuraiana	Rw3G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	325
AccII	CGCG	2 cut(s)	86, 147
AciI	CCGC	4 cut(s)	63, 84, 145, 390
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	124
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	283, 368
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	2 cut(s)	58, 276
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	3 cut(s)	25, 131, 335
ApoI	RAATTY	1 cut(s)	124
AspA2I	CCTAGG	1 cut(s)	301
AspLEI	GCGC	2 cut(s)	149, 326
AspS9I	GGNCC	3 cut(s)	13, 56, 387
AsuHPI	GGTGA	2 cut(s)	16, 115
AvaII	GGWCC	3 cut(s)	13, 56, 387
AvrII	CCTAGG	1 cut(s)	301
BbvI	GCAGC	3 cut(s)	37, 118, 347
BceAI	ACGGC	1 cut(s)	13
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	2 cut(s)	60, 278
BclI	TGATCA	1 cut(s)	174
BfaI	CTAG	1 cut(s)	302
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	3 cut(s)	26, 132, 336
BlnI	CCTAGG	1 cut(s)	301
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	3 cut(s)	27, 133, 337
Bme1390I	CCNGG	2 cut(s)	60, 278
Bme18I	GGWCC	3 cut(s)	13, 56, 387
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	13, 56, 387
BmiI	GGNNCC	1 cut(s)	388
BmrFI	CCNGG	2 cut(s)	60, 278
BmsI	GCATC	3 cut(s)	89, 231, 401
BoxI	GACNNNNGTC	1 cut(s)	11
BpmI	CTGGAG	2 cut(s)	222, 396
Bpu1102I	GCTNAGC	1 cut(s)	114
BsaJI	CCNNGG	4 cut(s)	231, 277, 301, 365
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 368
Bse1I	ACTGG	2 cut(s)	205, 344
BseBI	CCWGG	2 cut(s)	60, 278
BseDI	CCNNGG	4 cut(s)	231, 277, 301, 365
BseGI	GGATG	2 cut(s)	80, 177
BseLI	CCNNNNNNNGG	2 cut(s)	283, 368
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	2 cut(s)	205, 344
BseXI	GCAGC	3 cut(s)	37, 118, 347
Bsh1236I	CGCG	2 cut(s)	86, 147
BshFI	GGCC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	283, 368
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	276
Bsp143I	GATC	3 cut(s)	174, 205, 250
Bsp1720I	GCTNAGC	1 cut(s)	114
BspACI	CCGC	4 cut(s)	63, 84, 145, 390
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	2 cut(s)	86, 147
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	205, 344
BssECI	CCNNGG	4 cut(s)	231, 277, 301, 365
BssMI	GATC	3 cut(s)	174, 205, 250
BssT1I	CCWWGG	2 cut(s)	301, 365
Bst2UI	CCWGG	2 cut(s)	60, 278
Bst4CI	ACNGT	1 cut(s)	10
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	80, 177
BstFNI	CGCG	2 cut(s)	86, 147
BstHHI	GCGC	2 cut(s)	149, 326
BstKTI	GATC	3 cut(s)	177, 208, 253
BstMBI	GATC	3 cut(s)	174, 205, 250
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 321, 332
BstNI	CCWGG	2 cut(s)	60, 278
BstNSI	RCATGY	2 cut(s)	248, 342
BstPAI	GACNNNNGTC	1 cut(s)	11
BstSCI	CCNGG	2 cut(s)	58, 276
BstUI	CGCG	2 cut(s)	86, 147
BstV1I	GCAGC	3 cut(s)	37, 118, 347
BstX2I	RGATCY	2 cut(s)	205, 250
BstYI	RGATCY	2 cut(s)	205, 250
BsuRI	GGCC	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	231
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	80, 177
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	2 cut(s)	149, 326
Cfr13I	GGNCC	3 cut(s)	13, 56, 387
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	6 cut(s)	217, 245, 283, 332, 339, 349
CviJI	RGCY	5 cut(s)	28, 113, 230, 276, 361
CviKI_1	RGCY	5 cut(s)	28, 113, 230, 276, 361
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	3 cut(s)	176, 207, 252
DpnII	GATC	3 cut(s)	174, 205, 250
DraIII	CACNNNGTG	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	78
Eco130I	CCWWGG	2 cut(s)	301, 365
Eco47I	GGWCC	3 cut(s)	13, 56, 387
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	58, 276
EcoT14I	CCWWGG	2 cut(s)	301, 365
EcoT22I	ATGCAT	2 cut(s)	82, 246
ErhI	CCWWGG	2 cut(s)	301, 365
FaeI	CATG	6 cut(s)	220, 248, 286, 335, 342, 352
FaiI	YATR	8 cut(s)	78, 152, 218, 246, 284, 333, 340, 350
FatI	CATG	6 cut(s)	216, 244, 282, 331, 338, 348
FauI	CCCGC	1 cut(s)	152
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	26, 132, 336
FokI	GGATG	2 cut(s)	67, 184
Fsp4HI	GCNGC	3 cut(s)	26, 132, 336
FspBI	CTAG	1 cut(s)	302
FspI	TGCGCA	1 cut(s)	325
GlaI	GCGC	2 cut(s)	148, 325
GluI	GCNGC	3 cut(s)	26, 132, 336
GsuI	CTGGAG	2 cut(s)	222, 396
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	2 cut(s)	149, 326
Hin1II	CATG	6 cut(s)	220, 248, 286, 335, 342, 352
Hin6I	GCGC	2 cut(s)	147, 324
HinP1I	GCGC	2 cut(s)	147, 324
HinfI	GANTC	2 cut(s)	98, 193
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	16, 115
Hpy166II	GTNNAC	2 cut(s)	16, 46
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	3 cut(s)	289, 349, 375
Hpy8I	GTNNAC	2 cut(s)	16, 46
Hpy99I	CGWCG	1 cut(s)	91
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	5 cut(s)	80, 154, 162, 244, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 321, 332
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	6 cut(s)	220, 248, 286, 335, 342, 352
HspAI	GCGC	2 cut(s)	147, 324
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	3 cut(s)	174, 205, 250
LmnI	GCTCC	3 cut(s)	65, 235, 377
Lsp1109I	GCAGC	3 cut(s)	37, 118, 347
LweI	GCATC	3 cut(s)	89, 231, 401
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	4, 19
MalI	GATC	3 cut(s)	176, 207, 252
MboI	GATC	3 cut(s)	174, 205, 250
MboII	GAAGA	2 cut(s)	118, 245
MflI	RGATCY	2 cut(s)	205, 250
MluCI	AATT	1 cut(s)	124
MlyI	GAGTC	2 cut(s)	107, 187
Mph1103I	ATGCAT	2 cut(s)	82, 246
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	60, 278
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	2 cut(s)	60, 278
MvnI	CGCG	2 cut(s)	86, 147
MwoI	GCNNNNNNNGC	3 cut(s)	34, 321, 332
NdeII	GATC	3 cut(s)	174, 205, 250
NlaIII	CATG	6 cut(s)	220, 248, 286, 335, 342, 352
NlaIV	GGNNCC	1 cut(s)	388
NmuCI	GTSAC	2 cut(s)	4, 19
NsbI	TGCGCA	1 cut(s)	325
NsiI	ATGCAT	2 cut(s)	82, 246
NspI	RCATGY	2 cut(s)	248, 342
PagI	TCATGA	1 cut(s)	348
PctI	GAATGC	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	27, 133, 337
PleI	GAGTC	2 cut(s)	106, 187
PpsI	GAGTC	2 cut(s)	106, 187
PshAI	GACNNNNGTC	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	58, 276
PspGI	CCWGG	2 cut(s)	58, 276
PspN4I	GGNNCC	1 cut(s)	388
PspPI	GGNCC	3 cut(s)	13, 56, 387
PsuI	RGATCY	2 cut(s)	205, 250
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SatI	GCNGC	3 cut(s)	26, 132, 336
Sau3AI	GATC	3 cut(s)	174, 205, 250
Sau96I	GGNCC	3 cut(s)	13, 56, 387
SchI	GAGTC	2 cut(s)	107, 187
ScrFI	CCNGG	2 cut(s)	60, 278
SetI	ASST	4 cut(s)	21, 61, 74, 115
SfaNI	GCATC	3 cut(s)	89, 231, 401
SinI	GGWCC	3 cut(s)	13, 56, 387
Sse9I	AATT	1 cut(s)	124
SsiI	CCGC	4 cut(s)	63, 84, 145, 390
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	2 cut(s)	58, 276
StyI	CCWWGG	2 cut(s)	301, 365
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	1 cut(s)	21
TasI	AATT	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	4, 19
TseI	GCWGC	3 cut(s)	25, 131, 335
Tsp45I	GTSAC	2 cut(s)	4, 19
TspGWI	ACGGA	1 cut(s)	248
VpaK11BI	GGWCC	3 cut(s)	13, 56, 387
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	2 cut(s)	248, 342
XmaJI	CCTAGG	1 cut(s)	301
XspI	CTAG	1 cut(s)	302
Zsp2I	ATGCAT	2 cut(s)	82, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.