Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8357573.1

Orthogroup ID

OG0007298

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 969

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8357573.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 560 bp

acgttggggatgagggactgagaagaacgaagatgagggtgatggtcgccatcgacgaaagcgactcgagcttctacgcgctcaactgggcgcttgatcacctctttatcaacgcgccgagtactctggaaggcggcgagggggaaggggggatggtgaaggtggtccacgtcacgcagccgtttcagcactttgtgtaccctgccggacctgccggagcaacctattatgcatccgcgtcggtggtggagtcggtgaagaaagctcagcaggagaattctgctgccattctctcccgcgctatgcagatttgcaaggataggatgatcaaagcagaaactctgactctgactggagatccaaaggacatgatttgtcaagccacagagcagatgcatgtagatcttcttgttgttggtagtcgtggcctgggcatggtcaagagagcattcctagggagtgtgagcgactactgcgcacatcatgcatcatgtccagtcatgattgtaaagccaccaagggggtctggagcaaaggggtctgcatcatctaaaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

185

Amino Acids

19.79

Weight (kDa)

8.36

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11930 AT3G11930 AT3G11930 AT3G11930 AT3G58450 AT3G58450
fragaria_vesca	FvH4_6g21250
malus_domestica	MD14G1047700.v1.1 MD14G1047900.v1.1
prunus_persica	Prupe.7G087200_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477711
rosa_laevigata	RLG00000023696
rosa_multiflora	Rmu_co8357573.1_g000001 Rmu_sc0019064.1_g000001 Rmu_sc0019065.1_g000002
rosa_roxburghii	Rroxscaffold_6G00403730
rosa_rugosa	Rorug03G0162900
rosa_samantha	Rh3AG213100 Rh3BG246800 Rh3CG240600 Rh3DG239900
rosa_wichuraiana	Rw3G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	477
Acc36I	ACCTGC	1 cut(s)	219
AccII	CGCG	4 cut(s)	79, 115, 238, 299
AciI	CCGC	3 cut(s)	134, 236, 297
AclWI	GGATC	1 cut(s)	352
AcsI	RAATTY	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	123, 199
AfiI	CCNNNNNNNGG	2 cut(s)	435, 520
AjiI	CACGTC	1 cut(s)	171
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	2 cut(s)	71, 265
AluI	AGCT	2 cut(s)	71, 265
AlwI	GGATC	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	66
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	2 cut(s)	177, 283
ApoI	RAATTY	1 cut(s)	276
AspA2I	CCTAGG	1 cut(s)	453
AspLEI	GCGC	5 cut(s)	81, 93, 117, 301, 478
AspS9I	GGNCC	2 cut(s)	165, 208
AsuHPI	GGTGA	4 cut(s)	51, 91, 168, 267
AvaI	CYCGRG	1 cut(s)	66
AvaII	GGWCC	2 cut(s)	165, 208
AvrII	CCTAGG	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	189, 270
BccI	CCATC	3 cut(s)	36, 58, 147
BceAI	ACGGC	1 cut(s)	165
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	1 cut(s)	430
BclI	TGATCA	2 cut(s)	96, 326
BfaI	CTAG	1 cut(s)	454
BfoI	RGCGCY	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	219
BglII	AGATCT	1 cut(s)	402
BisI	GCNGC	3 cut(s)	135, 178, 284
BlnI	CCTAGG	1 cut(s)	453
BlpI	GCTNAGC	1 cut(s)	266
BlsI	GCNGC	3 cut(s)	136, 179, 285
BmcAI	AGTACT	1 cut(s)	123
Bme1390I	CCNGG	1 cut(s)	430
Bme18I	GGWCC	2 cut(s)	165, 208
BmeT110I	CYCGRG	1 cut(s)	66
BmgBI	CACGTC	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	165, 208
BmrFI	CCNGG	1 cut(s)	430
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	4 cut(s)	241, 383, 496, 553
BmuI	ACTGGG	1 cut(s)	96
BpmI	CTGGAG	2 cut(s)	374, 548
Bpu1102I	GCTNAGC	1 cut(s)	266
BsaJI	CCNNGG	3 cut(s)	429, 453, 517
Bsc4I	CCNNNNNNNGG	2 cut(s)	435, 520
Bse1I	ACTGG	3 cut(s)	91, 357, 496
BseBI	CCWGG	1 cut(s)	430
BseDI	CCNNGG	3 cut(s)	429, 453, 517
BseGI	GGATG	4 cut(s)	15, 158, 232, 329
BseLI	CCNNNNNNNGG	2 cut(s)	435, 520
BseMII	CTCAG	2 cut(s)	10, 280
BseNI	ACTGG	3 cut(s)	91, 357, 496
BseXI	GCAGC	2 cut(s)	189, 270
Bsh1236I	CGCG	4 cut(s)	79, 115, 238, 299
BshFI	GGCC	1 cut(s)	428
BsiHKCI	CYCGRG	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	206, 215
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	435, 520
BsmFI	GGGAC	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	428
BsoBI	CYCGRG	1 cut(s)	66
Bsp143I	GATC	4 cut(s)	96, 326, 357, 402
Bsp1720I	GCTNAGC	1 cut(s)	266
BspACI	CCGC	3 cut(s)	134, 236, 297
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	2 cut(s)	11, 279
BspFNI	CGCG	4 cut(s)	79, 115, 238, 299
BspHI	TCATGA	1 cut(s)	500
BspMI	ACCTGC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	352
BsrI	ACTGG	3 cut(s)	91, 357, 496
BssECI	CCNNGG	3 cut(s)	429, 453, 517
BssMI	GATC	4 cut(s)	96, 326, 357, 402
BssT1I	CCWWGG	2 cut(s)	453, 517
Bst2UI	CCWGG	1 cut(s)	430
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstDEI	CTNAG	2 cut(s)	19, 266
BstF5I	GGATG	4 cut(s)	15, 158, 232, 329
BstFNI	CGCG	4 cut(s)	79, 115, 238, 299
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	5 cut(s)	81, 93, 117, 301, 478
BstKTI	GATC	4 cut(s)	99, 329, 360, 405
BstMBI	GATC	4 cut(s)	96, 326, 357, 402
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 186, 211, 473, 484
BstNI	CCWGG	1 cut(s)	430
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	428
BstUI	CGCG	4 cut(s)	79, 115, 238, 299
BstV1I	GCAGC	2 cut(s)	189, 270
BstX2I	RGATCY	2 cut(s)	357, 402
BstYI	RGATCY	2 cut(s)	357, 402
BsuRI	GGCC	1 cut(s)	428
BtrI	CACGTC	1 cut(s)	171
BtsCI	GGATG	4 cut(s)	15, 158, 232, 329
BveI	ACCTGC	1 cut(s)	219
CciI	TCATGA	1 cut(s)	500
CfoI	GCGC	5 cut(s)	81, 93, 117, 301, 478
Cfr13I	GGNCC	2 cut(s)	165, 208
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	122, 198
CviAII	CATG	6 cut(s)	369, 397, 435, 484, 491, 501
CviJI	RGCY	6 cut(s)	71, 180, 265, 382, 428, 513
CviKI_1	RGCY	6 cut(s)	71, 180, 265, 382, 428, 513
CviQI	GTAC	2 cut(s)	122, 198
DdeI	CTNAG	2 cut(s)	19, 266
DpnI	GATC	4 cut(s)	98, 328, 359, 404
DpnII	GATC	4 cut(s)	96, 326, 357, 402
DraIII	CACNNNGTG	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	453, 517
Eco47I	GGWCC	2 cut(s)	165, 208
Eco88I	CYCGRG	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	428
EcoT14I	CCWWGG	2 cut(s)	453, 517
EcoT22I	ATGCAT	3 cut(s)	234, 398, 489
ErhI	CCWWGG	2 cut(s)	453, 517
FaeI	CATG	6 cut(s)	372, 400, 438, 487, 494, 504
FaiI	YATR	8 cut(s)	230, 304, 370, 398, 436, 485, 492, 502
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	6 cut(s)	368, 396, 434, 483, 490, 500
FauI	CCCGC	1 cut(s)	304
FbaI	TGATCA	2 cut(s)	96, 326
Fnu4HI	GCNGC	3 cut(s)	135, 178, 284
FokI	GGATG	4 cut(s)	22, 165, 219, 336
Fsp4HI	GCNGC	3 cut(s)	135, 178, 284
FspBI	CTAG	1 cut(s)	454
FspI	TGCGCA	1 cut(s)	477
GlaI	GCGC	5 cut(s)	80, 92, 116, 300, 477
GluI	GCNGC	3 cut(s)	135, 178, 284
GsuI	CTGGAG	2 cut(s)	374, 548
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	428
HapII	CCGG	2 cut(s)	206, 215
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	5 cut(s)	81, 93, 117, 301, 478
Hin1II	CATG	6 cut(s)	372, 400, 438, 487, 494, 504
Hin6I	GCGC	5 cut(s)	79, 91, 115, 299, 476
HinP1I	GCGC	5 cut(s)	79, 91, 115, 299, 476
HinfI	GANTC	3 cut(s)	64, 250, 345
HpaII	CCGG	2 cut(s)	206, 215
HphI	GGTGA	4 cut(s)	51, 91, 168, 267
Hpy166II	GTNNAC	2 cut(s)	168, 198
Hpy188I	TCNGA	2 cut(s)	344, 350
Hpy188III	TCNNGA	4 cut(s)	127, 441, 501, 527
Hpy8I	GTNNAC	2 cut(s)	168, 198
Hpy99I	CGWCG	2 cut(s)	58, 243
HpyAV	CCTTC	3 cut(s)	124, 139, 153
HpyCH4IV	ACGT	2 cut(s)	2, 170
HpyCH4V	TGCA	6 cut(s)	232, 306, 314, 396, 487, 544
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 186, 211, 473, 484
HpyF3I	CTNAG	2 cut(s)	19, 266
HpySE526I	ACGT	2 cut(s)	2, 170
Hsp92II	CATG	6 cut(s)	372, 400, 438, 487, 494, 504
HspAI	GCGC	5 cut(s)	79, 91, 115, 299, 476
Ksp22I	TGATCA	2 cut(s)	96, 326
Kzo9I	GATC	4 cut(s)	96, 326, 357, 402
LmnI	GCTCC	2 cut(s)	217, 529
Lsp1109I	GCAGC	2 cut(s)	189, 270
LweI	GCATC	4 cut(s)	241, 383, 496, 553
MaeI	CTAG	1 cut(s)	454
MaeII	ACGT	2 cut(s)	2, 170
MaeIII	GTNAC	1 cut(s)	171
MalI	GATC	4 cut(s)	98, 328, 359, 404
MboI	GATC	4 cut(s)	96, 326, 357, 402
MboII	GAAGA	4 cut(s)	35, 42, 270, 397
MflI	RGATCY	2 cut(s)	357, 402
MluCI	AATT	1 cut(s)	276
MlyI	GAGTC	3 cut(s)	58, 259, 339
MnlI	CCTC	4 cut(s)	6, 29, 112, 132
Mph1103I	ATGCAT	3 cut(s)	234, 398, 489
MspI	CCGG	2 cut(s)	206, 215
MspR9I	CCNGG	1 cut(s)	430
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	430
MvnI	CGCG	4 cut(s)	79, 115, 238, 299
MwoI	GCNNNNNNNGC	5 cut(s)	68, 186, 211, 473, 484
NdeII	GATC	4 cut(s)	96, 326, 357, 402
NlaIII	CATG	6 cut(s)	372, 400, 438, 487, 494, 504
NmeAIII	GCCGAG	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	171
NsbI	TGCGCA	1 cut(s)	477
NsiI	ATGCAT	3 cut(s)	234, 398, 489
NspI	RCATGY	1 cut(s)	400
PaeR7I	CTCGAG	1 cut(s)	66
PagI	TCATGA	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 59
PctI	GAATGC	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	136, 179, 285
PleI	GAGTC	3 cut(s)	58, 258, 339
PpsI	GAGTC	3 cut(s)	58, 258, 339
Psp6I	CCWGG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	428
PspPI	GGNCC	2 cut(s)	165, 208
PspXI	VCTCGAGB	1 cut(s)	66
PsuI	RGATCY	2 cut(s)	357, 402
RsaI	GTAC	2 cut(s)	123, 199
RsaNI	GTAC	2 cut(s)	122, 198
SatI	GCNGC	3 cut(s)	135, 178, 284
Sau3AI	GATC	4 cut(s)	96, 326, 357, 402
Sau96I	GGNCC	2 cut(s)	165, 208
ScaI	AGTACT	1 cut(s)	123
SchI	GAGTC	3 cut(s)	58, 259, 339
ScrFI	CCNGG	1 cut(s)	430
SetI	ASST	7 cut(s)	73, 104, 164, 173, 213, 226, 267
SfaNI	GCATC	4 cut(s)	241, 383, 496, 553
Sfr274I	CTCGAG	1 cut(s)	66
SinI	GGWCC	2 cut(s)	165, 208
SlaI	CTCGAG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	1 cut(s)	276
SsiI	CCGC	3 cut(s)	134, 236, 297
SspMI	CTAG	1 cut(s)	454
StyD4I	CCNGG	1 cut(s)	428
StyI	CCWWGG	2 cut(s)	453, 517
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	2 cut(s)	53, 67
TasI	AATT	1 cut(s)	276
TatI	WGTACW	1 cut(s)	121
TauI	GCSGC	1 cut(s)	137
TseFI	GTSAC	1 cut(s)	171
TseI	GCWGC	2 cut(s)	177, 283
Tsp45I	GTSAC	1 cut(s)	171
VpaK11BI	GGWCC	2 cut(s)	165, 208
XapI	RAATTY	1 cut(s)	276
XceI	RCATGY	1 cut(s)	400
XhoI	CTCGAG	1 cut(s)	66
XmaJI	CCTAGG	1 cut(s)	453
XspI	CTAG	1 cut(s)	454
ZrmI	AGTACT	1 cut(s)	123
Zsp2I	ATGCAT	3 cut(s)	234, 398, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.