Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002963

Physical Location & Seq

Genomic Coordinates Reverse (-)

3860251 .. 3863250

Gene Structure 3000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGGTGCAGGTGGAAGAATGCCGGTTCCTACTTCTTCCAAGAAATCGGAAACCGACACCACAAAGCGTGTGCCGTGCGAGAAACCGCCTTTCTCGGTGGGAGATCTGAAGAAAGCAATCCCGCCGCATTGTTTCAAACGCTCAATCCCTCGCTCTTTCTCCTACCTTATCAGTGACATCATTATAGCCTCATGCTTCTACTACGTCGCCACCAATTACTTCTCTCTCCTCCCTCAGCCTCTCTCTTACTTGGCTTGGCCACTCTATTGGGCCTGTCAAGGCTGTGTCCTAACTGGTATCTGGGTCATAGCCCACGAATGCGGTCACCACGCATTCAGCGACTACCAATGGCTGGATGACACAGTTGGTCTTATCTTCCATTCCTTCCTCCTCGTCCCTTACTTCTCCTGGAAGTATAGTCATCGCCGTCACCATTCCAACACTGGATCCCTCGAAAGAGATGAAGTATTTGTCCCAAAGCAGAAATCAGCAATCAAGTGGTACGGGAAATACCTCAACAACCCTCTTGGACGCATCATGATGTTAACCGTCCAGTTTGTCCTCGGGTGGCCCTTGTACTTAGCCTTTAACGTCTCTGGCAGACCGTATGACGGGTTCGCTTGCCATTTCTTCCCCAACGCTCCCATCTACAATGACCGAGAACGCCTCCAGATATACCTCTCTGATGCGGGTATTCTAGCCGTCTGTTTTGGTCTTTACCGTTACGCTGCTGCACAAGGGATGGCCTCGATGATCTGCCTCTACGGAGTACCGCTTCTGATAGTGAATGCGTTCCTCGTCTTGATCACTTACTTGCAGCACACTCATCCCTCGTTGCCTCACTACGATTCATCAGAGTGGGACTGGCTCAGGGGAGCTTTGGCTACCGTAGACAGAGACTACGGAATCTTGAACAAGGTGTTCCACAACATTACAGACACACACGTGGCTCATCACCTGTTCTCGACAATGCCGCATTATAACGCAATGGAAGCTACAAAGGCGATAAAGCCAATTCTGGGAGACTATTACCAGTTCGATGGAACACCGTGGTATGTAGCGATGTATAGGGAGGCAAAGGAGTGTATCTATGTAGAACCGGACAGGGAAGGTGACAAGAAAGGTGTGTACTGGTACAACAATAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045485 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 map01040 map01212

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

383

Amino Acids

44.05

Weight (kDa)

8.39

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3474	PF11960	19 - 63	2.1e-06	Domain of unknown function (DUF3474)
FA_desaturase	PF00487	85 - 345	1.6e-32	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12120 AT3G12120
fragaria_vesca	FvH4_3g44270 FvH4_6g22400
malus_domestica	MD03G1015100.v1.1 MD12G1057600.v1.1 MD14G1058300.v1.1
prunus_persica	Prupe.7G076500_v2.0.a1 Prupe.7G076500_v2.0.a1
pyrus_communis	pycom03g01260 pycom12g05120 pycom14g04710
rosa_chinensis	RchiOBHm_Chr3g0479761 RchiOBHm_Chr5g0080581
rosa_laevigata	RLG00000023544 RLG00000036873
rosa_multiflora	Rmu_sc0002380.1_g000002 Rmu_sc0003755.1_g000012
rosa_roxburghii	Rroxscaffold_1G00002780 Rroxscaffold_6G00402030
rosa_rugosa	Rorug03G0178000 Rorug03G0178000 Rorug03G0178000 Rorug03G0178100 Rorug03G0178200 Rorug05G0470600
rosa_samantha	Rh3AG228900 Rh3BG262000 Rh3CG258900 Rh3DG255000 Rh5AG524000 Rh5BG546200 Rh5CG569400 Rh5DG556400
rosa_wichuraiana	Rw0G015310 Rw3G020450 Rw3G020630 Rw5G048610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	981
AccB7I	CCANNNNNTGG	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	891
AciI	CCGC	7 cut(s)	86, 122, 125, 321, 689, 773, 974
AclWI	GGATC	2 cut(s)	441, 454
AcoI	YGGCCR	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	128
AcvI	CACGTG	1 cut(s)	946
AfaI	GTAC	5 cut(s)	503, 578, 771, 1130, 1136
AfiI	CCNNNNNNNGG	3 cut(s)	352, 611, 1019
AflIII	ACRYGT	1 cut(s)	943
AgsI	TTSAA	2 cut(s)	136, 913
AjnI	CCWGG	1 cut(s)	407
AleI	CACNNNNGTG	1 cut(s)	944
AluBI	AGCT	2 cut(s)	878, 995
AluI	AGCT	2 cut(s)	878, 995
Alw26I	GTCTC	3 cut(s)	598, 891, 1017
AlwI	GGATC	2 cut(s)	441, 454
Ama87I	CYCGRG	1 cut(s)	563
AoxI	GGCC	4 cut(s)	257, 270, 569, 744
ApeKI	GCWGC	3 cut(s)	728, 731, 817
Asp700I	GAANNNNTTC	1 cut(s)	791
AspS9I	GGNCC	2 cut(s)	270, 570
AsuHPI	GGTGA	4 cut(s)	317, 422, 947, 1124
AvaI	CYCGRG	1 cut(s)	563
BalI	TGGCCA	1 cut(s)	259
BamHI	GGATCC	1 cut(s)	446
BbrPI	CACGTG	1 cut(s)	946
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	715, 718, 829
BccI	CCATC	3 cut(s)	653, 736, 1034
BceAI	ACGGC	3 cut(s)	58, 411, 686
BciT130I	CCWGG	1 cut(s)	409
BclI	TGATCA	1 cut(s)	804
BcoDI	GTCTC	3 cut(s)	598, 891, 1017
BfaI	CTAG	1 cut(s)	698
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	5 cut(s)	125, 729, 732, 818, 974
BlsI	GCNGC	5 cut(s)	126, 730, 733, 819, 975
Bme1390I	CCNGG	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	563
BmgT120I	GGNCC	2 cut(s)	270, 570
BmiI	GGNNCC	2 cut(s)	27, 448
BmrFI	CCNGG	1 cut(s)	409
BmsI	GCATC	2 cut(s)	543, 676
BplI	GAGNNNNNCTC	2 cut(s)	651, 683
BpmI	CTGGAG	1 cut(s)	653
Bpu10I	CCTNAGC	2 cut(s)	234, 869
BsaAI	YACGTR	1 cut(s)	946
BsaJI	CCNNGG	2 cut(s)	562, 1049
BsaWI	WCCGGW	1 cut(s)	1099
Bsc4I	CCNNNNNNNGG	3 cut(s)	352, 611, 1019
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	6 cut(s)	298, 448, 553, 869, 1033, 1136
Bse3DI	GCAATG	1 cut(s)	993
BseBI	CCWGG	1 cut(s)	409
BseDI	CCNNGG	2 cut(s)	562, 1049
BseGI	GGATG	3 cut(s)	361, 747, 826
BseLI	CCNNNNNNNGG	3 cut(s)	352, 611, 1019
BseMI	GCAATG	1 cut(s)	993
BseMII	CTCAG	2 cut(s)	248, 883
BseNI	ACTGG	6 cut(s)	298, 448, 553, 869, 1033, 1136
BseRI	GAGGAG	2 cut(s)	218, 380
BseXI	GCAGC	3 cut(s)	715, 718, 829
BsgI	GTGCAG	2 cut(s)	27, 717
BshFI	GGCC	4 cut(s)	259, 272, 571, 746
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	2 cut(s)	23, 1100
BslFI	GGGAC	3 cut(s)	380, 458, 875
BslI	CCNNNNNNNGG	3 cut(s)	352, 611, 1019
BsmAI	GTCTC	3 cut(s)	598, 891, 1017
BsmBI	CGTCTC	1 cut(s)	598
BsmFI	GGGAC	3 cut(s)	380, 458, 875
BsmI	GAATGC	4 cut(s)	24, 323, 332, 793
BsnI	GGCC	4 cut(s)	259, 272, 571, 746
BsoBI	CYCGRG	1 cut(s)	563
Bsp143I	GATC	4 cut(s)	103, 446, 753, 804
BspACI	CCGC	7 cut(s)	86, 122, 125, 321, 689, 773, 974
BspANI	GGCC	4 cut(s)	259, 272, 571, 746
BspCNI	CTCAG	2 cut(s)	247, 882
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	2 cut(s)	27, 448
BspPI	GGATC	2 cut(s)	441, 454
BsrDI	GCAATG	1 cut(s)	993
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	6 cut(s)	298, 448, 553, 869, 1033, 1136
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	562, 1049
BssMI	GATC	4 cut(s)	103, 446, 753, 804
Bst2UI	CCWGG	1 cut(s)	409
Bst4CI	ACNGT	6 cut(s)	364, 550, 606, 722, 889, 1050
BstBAI	YACGTR	1 cut(s)	946
BstC8I	GCNNGC	1 cut(s)	622
BstDEI	CTNAG	3 cut(s)	234, 580, 869
BstDSI	CCRYGG	1 cut(s)	1049
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	3 cut(s)	361, 747, 826
BstKTI	GATC	4 cut(s)	106, 449, 756, 807
BstMAI	GTCTC	3 cut(s)	598, 891, 1017
BstMBI	GATC	4 cut(s)	103, 446, 753, 804
BstMWI	GCNNNNNNNGC	2 cut(s)	992, 1001
BstNI	CCWGG	1 cut(s)	409
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	407
BstV1I	GCAGC	3 cut(s)	715, 718, 829
BstX2I	RGATCY	2 cut(s)	103, 446
BstXI	CCANNNNNNTGG	2 cut(s)	267, 1040
BstYI	RGATCY	2 cut(s)	103, 446
BsuRI	GGCC	4 cut(s)	259, 272, 571, 746
BtgI	CCRYGG	1 cut(s)	1049
BtgZI	GCGATG	2 cut(s)	407, 1076
BtsCI	GGATG	3 cut(s)	361, 747, 826
BtsIMutI	CAGTG	2 cut(s)	178, 441
Cac8I	GCNNGC	1 cut(s)	622
CciI	TCATGA	1 cut(s)	537
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	270, 570
CseI	GACGC	1 cut(s)	540
Csp6I	GTAC	5 cut(s)	502, 577, 770, 1129, 1135
CviAII	CATG	2 cut(s)	192, 538
CviQI	GTAC	5 cut(s)	502, 577, 770, 1129, 1135
DdeI	CTNAG	3 cut(s)	234, 580, 869
DpnI	GATC	4 cut(s)	105, 448, 755, 806
DpnII	GATC	4 cut(s)	103, 446, 753, 804
EaeI	YGGCCR	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	128
Eco72I	CACGTG	1 cut(s)	946
Eco88I	CYCGRG	1 cut(s)	563
Eco91I	GGTNACC	1 cut(s)	323
EcoO65I	GGTNACC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	407
Esp3I	CGTCTC	1 cut(s)	598
FaeI	CATG	2 cut(s)	195, 541
FaqI	GGGAC	3 cut(s)	380, 458, 875
FatI	CATG	2 cut(s)	191, 537
FauI	CCCGC	2 cut(s)	129, 682
FbaI	TGATCA	1 cut(s)	804
FblI	GTMKAC	1 cut(s)	891
Fnu4HI	GCNGC	5 cut(s)	125, 729, 732, 818, 974
FokI	GGATG	3 cut(s)	368, 754, 813
Fsp4HI	GCNGC	5 cut(s)	125, 729, 732, 818, 974
FspBI	CTAG	1 cut(s)	698
GluI	GCNGC	5 cut(s)	125, 729, 732, 818, 974
GsuI	CTGGAG	1 cut(s)	653
HaeIII	GGCC	4 cut(s)	259, 272, 571, 746
HapII	CCGG	2 cut(s)	23, 1100
HgaI	GACGC	1 cut(s)	540
Hin1II	CATG	2 cut(s)	195, 541
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HinfI	GANTC	2 cut(s)	848, 906
HpaI	GTTAAC	1 cut(s)	546
HpaII	CCGG	2 cut(s)	23, 1100
HphI	GGTGA	4 cut(s)	317, 422, 947, 1124
Hpy166II	GTNNAC	3 cut(s)	546, 892, 1129
Hpy188I	TCNGA	5 cut(s)	49, 108, 685, 780, 856
Hpy188III	TCNNGA	5 cut(s)	538, 670, 802, 910, 964
Hpy8I	GTNNAC	3 cut(s)	546, 892, 1129
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	394, 1103
HpyCH4III	ACNGT	6 cut(s)	364, 550, 606, 722, 889, 1050
HpyCH4IV	ACGT	3 cut(s)	204, 591, 945
HpyCH4V	TGCA	3 cut(s)	8, 734, 817
HpyF10VI	GCNNNNNNNGC	2 cut(s)	992, 1001
HpyF3I	CTNAG	3 cut(s)	234, 580, 869
HpySE526I	ACGT	3 cut(s)	204, 591, 945
Hsp92II	CATG	2 cut(s)	195, 541
Ksp22I	TGATCA	1 cut(s)	804
KspAI	GTTAAC	1 cut(s)	546
Kzo9I	GATC	4 cut(s)	103, 446, 753, 804
LmnI	GCTCC	2 cut(s)	646, 875
Lsp1109I	GCAGC	3 cut(s)	715, 718, 829
LweI	GCATC	2 cut(s)	543, 676
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	3 cut(s)	204, 591, 945
MaeIII	GTNAC	5 cut(s)	173, 323, 428, 722, 1112
MalI	GATC	4 cut(s)	105, 448, 755, 806
MboI	GATC	4 cut(s)	103, 446, 753, 804
MboII	GAAGA	5 cut(s)	27, 27, 121, 367, 622
MflI	RGATCY	2 cut(s)	103, 446
MlsI	TGGCCA	1 cut(s)	259
MluCI	AATT	2 cut(s)	214, 1014
MluNI	TGGCCA	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	462
Mox20I	TGGCCA	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	791
MscI	TGGCCA	1 cut(s)	259
MseI	TTAA	2 cut(s)	545, 588
MslI	CAYNNNNRTG	3 cut(s)	539, 856, 944
Msp20I	TGGCCA	1 cut(s)	259
MspI	CCGG	2 cut(s)	23, 1100
MspR9I	CCNGG	1 cut(s)	409
Mva1269I	GAATGC	4 cut(s)	24, 323, 332, 793
MvaI	CCWGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	992, 1001
NdeII	GATC	4 cut(s)	103, 446, 753, 804
NlaIII	CATG	2 cut(s)	195, 541
NlaIV	GGNNCC	2 cut(s)	27, 448
NmuCI	GTSAC	4 cut(s)	173, 323, 428, 1112
OliI	CACNNNNGTG	1 cut(s)	944
PagI	TCATGA	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PctI	GAATGC	4 cut(s)	24, 323, 332, 793
PdmI	GAANNNNTTC	1 cut(s)	791
PfeI	GAWTC	2 cut(s)	848, 906
PflMI	CCANNNNNTGG	1 cut(s)	352
PfoI	TCCNGGA	1 cut(s)	407
PkrI	GCNGC	5 cut(s)	126, 730, 733, 819, 975
PmaCI	CACGTG	1 cut(s)	946
PmlI	CACGTG	1 cut(s)	946
Ppu21I	YACGTR	1 cut(s)	946
PsiI	TTATAA	1 cut(s)	981
Psp6I	CCWGG	1 cut(s)	407
PspCI	CACGTG	1 cut(s)	946
PspEI	GGTNACC	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	407
PspN4I	GGNNCC	2 cut(s)	27, 448
PspPI	GGNCC	2 cut(s)	270, 570
PsrI	GAACNNNNNNTAC	2 cut(s)	599, 631
PsuI	RGATCY	2 cut(s)	103, 446
RsaI	GTAC	5 cut(s)	503, 578, 771, 1130, 1136
RsaNI	GTAC	5 cut(s)	502, 577, 770, 1129, 1135
RseI	CAYNNNNRTG	3 cut(s)	539, 856, 944
SaqAI	TTAA	2 cut(s)	545, 588
SatI	GCNGC	5 cut(s)	125, 729, 732, 818, 974
Sau3AI	GATC	4 cut(s)	103, 446, 753, 804
Sau96I	GGNCC	2 cut(s)	270, 570
ScrFI	CCNGG	1 cut(s)	409
SfaNI	GCATC	2 cut(s)	543, 676
SmiMI	CAYNNNNRTG	3 cut(s)	539, 856, 944
Sse9I	AATT	2 cut(s)	214, 1014
SsiI	CCGC	7 cut(s)	86, 122, 125, 321, 689, 773, 974
SspMI	CTAG	1 cut(s)	698
StyD4I	CCNGG	1 cut(s)	407
TaaI	ACNGT	6 cut(s)	364, 550, 606, 722, 889, 1050
TaiI	ACGT	3 cut(s)	207, 594, 948
TaqI	TCGA	4 cut(s)	453, 749, 965, 1038
TaqII	GACCGA	1 cut(s)	672
TasI	AATT	2 cut(s)	214, 1014
TatI	WGTACW	2 cut(s)	576, 1128
TauI	GCSGC	2 cut(s)	127, 976
TfiI	GAWTC	2 cut(s)	848, 906
Tru1I	TTAA	2 cut(s)	545, 588
Tru9I	TTAA	2 cut(s)	545, 588
TscAI	CASTG	2 cut(s)	178, 448
TseFI	GTSAC	4 cut(s)	173, 323, 428, 1112
TseI	GCWGC	3 cut(s)	728, 731, 817
Tsp45I	GTSAC	4 cut(s)	173, 323, 428, 1112
TspDTI	ATGAA	2 cut(s)	477, 840
TspGWI	ACGGA	2 cut(s)	780, 918
TspRI	CASTG	2 cut(s)	178, 448
Van91I	CCANNNNNTGG	1 cut(s)	352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	891
XmnI	GAANNNNTTC	1 cut(s)	791
XspI	CTAG	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.