Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002963

Physical Location & Seq

Genomic Coordinates Reverse (-)

5006418 .. 5007566

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g05120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGTGCCGGTGGAAGAATGGTTGCGCCCCCTGTGCGCAAAAATGCCGATGCTGACACCCACAAGAGAGTTCCGTACTCTAAGCCTCCGTTCAGCCTCGGTGAGGTCAAGAAAGCCATCCCACCTCATTGTTTTCAGCGCTCTGTTATCCGCTCCTTCTCCTATGTCTTTTATGACCTCACCATTGCCTCCATCCTTTACTACATTGCTTCCACCTACATTCAGAATCTCTCTCAACCTCTCTCCTTCTTGGCATGGCCGATTTTCTGGTATGTTCAGGGCTGTGTTCTCACCGGTGTTTGGGTCATAGCACATGAGTGCGGTCACCATGCTTTCAGTGATTATCAATGGCTGGATGACACTGTTGGTCTTATCCTCCACTCTTGCCTCCTTGTCCCGTACTTCTCATGGAAGTATAGCCATCGCCGCCACCATTCCAACACAGGTTCCCTTGAGCGAGATGAAGTCTTTGTCCCCAAGCAGAAGTTCGAAATTGGATGGTATGCCAAATATCTCAACAACCCACCAGGCAGATTCCTCACACTCCTCATCCAACTCACTCTAGGCTGGCCTTTGTATCTTGCGTTCAATGTTTCTGGAAGGCCCTACAAAGGATTTGCTTGCCACTTTCATCCGTATGGACCAATCTACTCTGATCGCGAACGATTGCAGATATTTGTATCCGATGCTGGCGTTCTTGCTGTCTTCTATGGGCTTTACCGTCTTGCCGCTGCAAAGGGGCTTGCTTGGGTTATATGCTTCTACGGAGGTCCTCTAATGGTGGTGAATGGATTTTTGGTACTGATCACGTACTTGCAGCACACCCACCCCGCATTGCCGCACTATGATTCCTCTGAATGGGACTGGTTTAGGGGAGCTTTGGCCACCGTTGACAGAGACTACGGAATCCTGAACAAGGTTTTCCACAACATCACAGACACTCACGTTGCGCACCATTTGTTCTCAACCATGCCGCACTATCACGCAATGGAGGCGACCAAGGCAATCAAGCCGATATTGGGCGAGTACTATCAGTTCGACGGGACTCCGGTTTACAAGGCAATGTTTAGGGAGGCGAAGGAGTGTATCTACGTCGAACCCGATGAGGGTGCCAAGAAAGGTGTCTTCTGGTACAAGAAAAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045485 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 map01040 map01212

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

383

Amino Acids

43.93

Weight (kDa)

8.93

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3474	PF11960	24 - 62	6e-07	Domain of unknown function (DUF3474)
FA_desaturase	PF00487	85 - 345	7.2e-31	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12120 AT3G12120
fragaria_vesca	FvH4_3g44270 FvH4_6g22400
malus_domestica	MD03G1015100.v1.1 MD12G1057600.v1.1 MD14G1058300.v1.1
prunus_persica	Prupe.7G076500_v2.0.a1 Prupe.7G076500_v2.0.a1
pyrus_communis	pycom03g01260 pycom12g05120 pycom14g04710
rosa_chinensis	RchiOBHm_Chr3g0479761 RchiOBHm_Chr5g0080581
rosa_laevigata	RLG00000023544 RLG00000036873
rosa_multiflora	Rmu_sc0002380.1_g000002 Rmu_sc0003755.1_g000012
rosa_roxburghii	Rroxscaffold_1G00002780 Rroxscaffold_6G00402030
rosa_rugosa	Rorug03G0178000 Rorug03G0178000 Rorug03G0178000 Rorug03G0178100 Rorug03G0178200 Rorug05G0470600
rosa_samantha	Rh3AG228900 Rh3BG262000 Rh3CG258900 Rh3DG255000 Rh5AG524000 Rh5BG546200 Rh5CG569400 Rh5DG556400
rosa_wichuraiana	Rw0G015310 Rw3G020450 Rw3G020630 Rw5G048610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	38, 951
AccB1I	GGYRCC	2 cut(s)	5, 1109
AccBSI	CCGCTC	1 cut(s)	153
AccII	CGCG	1 cut(s)	660
AciI	CCGC	7 cut(s)	151, 321, 427, 729, 831, 839, 974
AcoI	YGGCCR	2 cut(s)	257, 882
AfaI	GTAC	6 cut(s)	77, 401, 801, 812, 1028, 1133
AfeI	AGCGCT	1 cut(s)	140
AfiI	CCNNNNNNNGG	7 cut(s)	103, 300, 611, 858, 916, 1019, 1106
AgeI	ACCGGT	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	589
AjnI	CCWGG	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	4 cut(s)	470, 502, 779, 811
AleI	CACNNNNGTG	1 cut(s)	316
AluBI	AGCT	2 cut(s)	878, 1144
AluI	AGCT	2 cut(s)	878, 1144
Alw26I	GTCTC	1 cut(s)	891
Aor51HI	AGCGCT	1 cut(s)	140
AoxI	GGCC	4 cut(s)	257, 569, 602, 882
ApeKI	GCWGC	2 cut(s)	731, 817
AsiGI	ACCGGT	1 cut(s)	293
AspLEI	GCGC	4 cut(s)	28, 39, 141, 952
AspS9I	GGNCC	3 cut(s)	603, 641, 770
AsuHPI	GGTGA	5 cut(s)	113, 172, 283, 317, 796
AsuII	TTCGAA	1 cut(s)	489
AvaII	GGWCC	2 cut(s)	641, 770
BalI	TGGCCA	1 cut(s)	884
BanI	GGYRCC	2 cut(s)	5, 1109
BbsI	GAAGAC	2 cut(s)	697, 1117
BbvI	GCAGC	2 cut(s)	718, 829
BccI	CCATC	4 cut(s)	125, 200, 429, 492
BcgI	CGANNNNNNTGC	2 cut(s)	1091, 1125
BciT130I	CCWGG	1 cut(s)	528
BciVI	GTATCC	1 cut(s)	691
BclI	TGATCA	1 cut(s)	804
BcoDI	GTCTC	1 cut(s)	891
BfaI	CTAG	1 cut(s)	563
BfoI	RGCGCY	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	691
BisI	GCNGC	6 cut(s)	427, 729, 732, 818, 839, 974
BlsI	GCNGC	6 cut(s)	428, 730, 733, 819, 840, 975
BmcAI	AGTACT	1 cut(s)	1028
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	2 cut(s)	641, 770
BmgT120I	GGNCC	3 cut(s)	603, 641, 770
BmiI	GGNNCC	3 cut(s)	7, 448, 1111
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	2 cut(s)	40, 676
BpiI	GAAGAC	2 cut(s)	697, 1117
Bpu14I	TTCGAA	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	473
BsaAI	YACGTR	1 cut(s)	810
BsaJI	CCNNGG	2 cut(s)	97, 999
BsaWI	WCCGGW	2 cut(s)	293, 1048
Bsc4I	CCNNNNNNNGG	7 cut(s)	103, 300, 611, 858, 916, 1019, 1106
Bse118I	RCCGGY	2 cut(s)	8, 293
Bse1I	ACTGG	1 cut(s)	869
Bse3DI	GCAATG	5 cut(s)	183, 204, 833, 993, 1068
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	97, 999
BseGI	GGATG	6 cut(s)	117, 192, 361, 503, 549, 631
BseLI	CCNNNNNNNGG	7 cut(s)	103, 300, 611, 858, 916, 1019, 1106
BseMI	GCAATG	5 cut(s)	183, 204, 833, 993, 1068
BseNI	ACTGG	1 cut(s)	869
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	2 cut(s)	718, 829
Bsh1236I	CGCG	1 cut(s)	660
BshFI	GGCC	4 cut(s)	259, 571, 604, 884
BshNI	GGYRCC	2 cut(s)	5, 1109
BshTI	ACCGGT	1 cut(s)	293
BsiSI	CCGG	3 cut(s)	9, 294, 1049
BslFI	GGGAC	4 cut(s)	380, 458, 875, 1057
BslI	CCNNNNNNNGG	7 cut(s)	103, 300, 611, 858, 916, 1019, 1106
BsmAI	GTCTC	1 cut(s)	891
BsmFI	GGGAC	4 cut(s)	380, 458, 875, 1057
BsnI	GGCC	4 cut(s)	259, 571, 604, 884
Bsp119I	TTCGAA	1 cut(s)	489
Bsp143I	GATC	2 cut(s)	655, 804
Bsp68I	TCGCGA	1 cut(s)	660
BspACI	CCGC	7 cut(s)	151, 321, 427, 729, 831, 839, 974
BspANI	GGCC	4 cut(s)	259, 571, 604, 884
BspFNI	CGCG	1 cut(s)	660
BspLI	GGNNCC	3 cut(s)	7, 448, 1111
BspT104I	TTCGAA	1 cut(s)	489
BspT107I	GGYRCC	2 cut(s)	5, 1109
BsrBI	CCGCTC	1 cut(s)	153
BsrDI	GCAATG	5 cut(s)	183, 204, 833, 993, 1068
BsrFI	RCCGGY	2 cut(s)	8, 293
BsrI	ACTGG	1 cut(s)	869
BssAI	RCCGGY	2 cut(s)	8, 293
BssECI	CCNNGG	2 cut(s)	97, 999
BssMI	GATC	2 cut(s)	655, 804
BssT1I	CCWWGG	1 cut(s)	999
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	3 cut(s)	364, 722, 889
BstBAI	YACGTR	1 cut(s)	810
BstBI	TTCGAA	1 cut(s)	489
BstC8I	GCNNGC	4 cut(s)	569, 622, 691, 744
BstDEI	CTNAG	1 cut(s)	81
BstEII	GGTNACC	1 cut(s)	323
BstENI	CCTNNNNNAGG	2 cut(s)	101, 914
BstF5I	GGATG	6 cut(s)	117, 192, 361, 503, 549, 631
BstFNI	CGCG	1 cut(s)	660
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	4 cut(s)	28, 39, 141, 952
BstKTI	GATC	2 cut(s)	658, 807
BstMAI	GTCTC	1 cut(s)	891
BstMBI	GATC	2 cut(s)	655, 804
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 426, 992, 1001
BstNI	CCWGG	1 cut(s)	528
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	526
BstUI	CGCG	1 cut(s)	660
BstV1I	GCAGC	2 cut(s)	718, 829
BstV2I	GAAGAC	2 cut(s)	697, 1117
BsuI	GTATCC	1 cut(s)	691
BsuRI	GGCC	4 cut(s)	259, 571, 604, 884
BtgZI	GCGATG	1 cut(s)	407
BtsCI	GGATG	6 cut(s)	117, 192, 361, 503, 549, 631
BtsIMutI	CAGTG	2 cut(s)	343, 360
BtuMI	TCGCGA	1 cut(s)	660
Cac8I	GCNNGC	4 cut(s)	569, 622, 691, 744
CfoI	GCGC	4 cut(s)	28, 39, 141, 952
Cfr10I	RCCGGY	2 cut(s)	8, 293
Cfr13I	GGNCC	3 cut(s)	603, 641, 770
Csp6I	GTAC	6 cut(s)	76, 400, 800, 811, 1027, 1132
CspAI	ACCGGT	1 cut(s)	293
CviAII	CATG	5 cut(s)	255, 314, 329, 408, 970
CviQI	GTAC	6 cut(s)	76, 400, 800, 811, 1027, 1132
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	2 cut(s)	657, 806
DpnII	GATC	2 cut(s)	655, 804
EaeI	YGGCCR	2 cut(s)	257, 882
Eco130I	CCWWGG	1 cut(s)	999
Eco47I	GGWCC	2 cut(s)	641, 770
Eco47III	AGCGCT	1 cut(s)	140
Eco91I	GGTNACC	1 cut(s)	323
EcoNI	CCTNNNNNAGG	2 cut(s)	101, 914
EcoO109I	RGGNCCY	2 cut(s)	603, 770
EcoO65I	GGTNACC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	999
ErhI	CCWWGG	1 cut(s)	999
FaeI	CATG	5 cut(s)	258, 317, 332, 411, 973
FaqI	GGGAC	4 cut(s)	380, 458, 875, 1057
FatI	CATG	5 cut(s)	254, 313, 328, 407, 969
FauI	CCCGC	1 cut(s)	838
FbaI	TGATCA	1 cut(s)	804
Fnu4HI	GCNGC	6 cut(s)	427, 729, 732, 818, 839, 974
FokI	GGATG	6 cut(s)	104, 179, 368, 510, 536, 618
Fsp4HI	GCNGC	6 cut(s)	427, 729, 732, 818, 839, 974
FspBI	CTAG	1 cut(s)	563
FspI	TGCGCA	2 cut(s)	38, 951
GlaI	GCGC	4 cut(s)	27, 38, 140, 951
GluI	GCNGC	6 cut(s)	427, 729, 732, 818, 839, 974
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	4 cut(s)	259, 571, 604, 884
HapII	CCGG	3 cut(s)	9, 294, 1049
HhaI	GCGC	4 cut(s)	28, 39, 141, 952
Hin1II	CATG	5 cut(s)	258, 317, 332, 411, 973
Hin6I	GCGC	4 cut(s)	26, 37, 139, 950
HinP1I	GCGC	4 cut(s)	26, 37, 139, 950
HincII	GTYRAC	1 cut(s)	892
HindII	GTYRAC	1 cut(s)	892
HinfI	GANTC	5 cut(s)	226, 534, 848, 906, 1045
HpaII	CCGG	3 cut(s)	9, 294, 1049
HphI	GGTGA	5 cut(s)	113, 172, 283, 317, 796
Hpy166II	GTNNAC	2 cut(s)	892, 1054
Hpy188I	TCNGA	4 cut(s)	225, 655, 685, 856
Hpy188III	TCNNGA	4 cut(s)	109, 597, 659, 910
Hpy8I	GTNNAC	2 cut(s)	892, 1054
Hpy99I	CGWCG	2 cut(s)	1043, 1097
HpyAV	CCTTC	4 cut(s)	166, 256, 594, 1072
HpyCH4III	ACNGT	3 cut(s)	364, 722, 889
HpyCH4IV	ACGT	3 cut(s)	809, 945, 1092
HpyCH4V	TGCA	3 cut(s)	670, 734, 817
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 426, 992, 1001
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	3 cut(s)	809, 945, 1092
Hsp92II	CATG	5 cut(s)	258, 317, 332, 411, 973
HspAI	GCGC	4 cut(s)	26, 37, 139, 950
Ksp22I	TGATCA	1 cut(s)	804
Kzo9I	GATC	2 cut(s)	655, 804
LmnI	GCTCC	2 cut(s)	158, 875
Lsp1109I	GCAGC	2 cut(s)	718, 829
LweI	GCATC	2 cut(s)	40, 676
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	3 cut(s)	809, 945, 1092
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	2 cut(s)	657, 806
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	2 cut(s)	655, 804
MboII	GAAGA	3 cut(s)	27, 697, 1117
MlsI	TGGCCA	1 cut(s)	884
MluCI	AATT	1 cut(s)	492
MluNI	TGGCCA	1 cut(s)	884
MlyI	GAGTC	1 cut(s)	1039
MmeI	TCCRAC	2 cut(s)	462, 577
Mox20I	TGGCCA	1 cut(s)	884
MscI	TGGCCA	1 cut(s)	884
MslI	CAYNNNNRTG	2 cut(s)	316, 636
Msp20I	TGGCCA	1 cut(s)	884
MspA1I	CMGCKG	1 cut(s)	731
MspI	CCGG	3 cut(s)	9, 294, 1049
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	1 cut(s)	660
MwoI	GCNNNNNNNGC	4 cut(s)	34, 426, 992, 1001
NdeII	GATC	2 cut(s)	655, 804
NlaIII	CATG	5 cut(s)	258, 317, 332, 411, 973
NlaIV	GGNNCC	3 cut(s)	7, 448, 1111
NmuCI	GTSAC	1 cut(s)	323
NruI	TCGCGA	1 cut(s)	660
NsbI	TGCGCA	2 cut(s)	38, 951
NspV	TTCGAA	1 cut(s)	489
OliI	CACNNNNGTG	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	1098
PfeI	GAWTC	4 cut(s)	226, 534, 848, 906
PinAI	ACCGGT	1 cut(s)	293
PkrI	GCNGC	6 cut(s)	428, 730, 733, 819, 840, 975
PleI	GAGTC	1 cut(s)	1039
PpsI	GAGTC	1 cut(s)	1039
Ppu21I	YACGTR	1 cut(s)	810
PpuMI	RGGWCCY	1 cut(s)	770
Psp5II	RGGWCCY	1 cut(s)	770
Psp6I	CCWGG	1 cut(s)	526
PspEI	GGTNACC	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	3 cut(s)	7, 448, 1111
PspPI	GGNCC	3 cut(s)	603, 641, 770
PspPPI	RGGWCCY	1 cut(s)	770
PsrI	GAACNNNNNNTAC	4 cut(s)	569, 601, 1019, 1051
RruI	TCGCGA	1 cut(s)	660
RsaI	GTAC	6 cut(s)	77, 401, 801, 812, 1028, 1133
RsaNI	GTAC	6 cut(s)	76, 400, 800, 811, 1027, 1132
RseI	CAYNNNNRTG	2 cut(s)	316, 636
SatI	GCNGC	6 cut(s)	427, 729, 732, 818, 839, 974
Sau3AI	GATC	2 cut(s)	655, 804
Sau96I	GGNCC	3 cut(s)	603, 641, 770
ScaI	AGTACT	1 cut(s)	1028
SchI	GAGTC	1 cut(s)	1039
ScrFI	CCNGG	1 cut(s)	528
SfaNI	GCATC	2 cut(s)	40, 676
SfuI	TTCGAA	1 cut(s)	489
SgrAI	CRCCGGYG	1 cut(s)	293
SinI	GGWCC	2 cut(s)	641, 770
SmiMI	CAYNNNNRTG	2 cut(s)	316, 636
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	1 cut(s)	492
SsiI	CCGC	7 cut(s)	151, 321, 427, 729, 831, 839, 974
SspMI	CTAG	1 cut(s)	563
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	1 cut(s)	999
TaaI	ACNGT	3 cut(s)	364, 722, 889
TaiI	ACGT	3 cut(s)	812, 948, 1095
TaqI	TCGA	3 cut(s)	489, 1038, 1095
TasI	AATT	1 cut(s)	492
TatI	WGTACW	1 cut(s)	1026
TauI	GCSGC	4 cut(s)	429, 731, 841, 976
TfiI	GAWTC	4 cut(s)	226, 534, 848, 906
TscAI	CASTG	2 cut(s)	343, 367
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	731, 817
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	477, 620
TspGWI	ACGGA	5 cut(s)	63, 78, 624, 780, 918
TspRI	CASTG	2 cut(s)	343, 367
VpaK11BI	GGWCC	2 cut(s)	641, 770
XagI	CCTNNNNNAGG	2 cut(s)	101, 914
XspI	CTAG	1 cut(s)	563
ZrmI	AGTACT	1 cut(s)	1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.