Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002963

Physical Location & Seq

Genomic Coordinates Reverse (-)

4429186 .. 4430451

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g04710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGACTGCCCCCCGTGCGCGTAAAATTGCTGAAGCTGACACCGTCAAGCGAGTTCCGTACGCTAAGCCTCCGTTCAGCCTCGGGGAGGTCAAGAAAGCCATCCCACCTCATTGTTTTCAGCGCTCTGTCATCCGCTCCTTCTCCTATGTCTTTTACGACCTCGCCATTGTTTCTATCATTTACTACATTGCTTCCACCTACATCCAGAACCTCTCTCAACCTCTCTCCTTCTTGGCGTGGCCTATTTATTTTTATGTTCAGGGCTGTGTTTGCACCGGTGTTTGGGTCATAGCACACGAGTGCGGTCACCATGCTTTCAGTGATTACCAGTGGCTGGATGACACTGTTGGTCTGATCCTCCACTCTTGCCTTCTTGTCCCATACTTCTCATGGAAGTATAGCCATCGCCGCCACCATTCCAACACAGGTTCCCTTGAGCGGGATGAAGTCTTTGTCCCCAAGCAAAAGTCTGCAATAGGGTGGTGGGCAAAATATCTCAACAACCCACCAGGCAGATTCCTCACTCTCGCCGTCCAACTCACTCTAGGCTGGCCTCTGTATCTCGCATTCAATGTTTCCGGAAGGCCCTACAAGGGATTTGCTTGCCACTTTCATCCATATGGCCCAATCTTCTCTGATCGCGAACGATTGCAGATATTTGTGTCTGATATTGGTGTCCTTGCTGTCTTCTATGGGCTTTACCATCTTGCTGTTGCAAAGGGACTTGCTTGGGTTATATGCTTCTACGGAGGTCCTCTAATGGTAGTGAACGGATATTTGGTGTTGATCACATACTTGCAGCACACTCACCCCGCATTGCCACACTATGATTCCTCCGAATGGGACTGGTTCAGGGGAGCTTTGGCCACCGTTGACAGAGACTACGGAATCCTGAACAAGGTTTTCCACAACATCACGGACACTCACGTTGCTCACCATTTATTCTCAACCATGCCGCACTATCACGCAATGGAGGCGACCAAGGCGATCAAGCCGATCTTGGGCGAGTACTATCAGTTCGACGGGACTCCGGTTCACAAGGCAATGTTCAGGGAGGTGAAGGAGTGTAGCTACGCTGAGCCCGACGAGGGTGACGAGAAGGGTGTCTTCTGGTACAATAATAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045485 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 map01040 map01212

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

377

Amino Acids

43.22

Weight (kDa)

8.29

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12120 AT3G12120
fragaria_vesca	FvH4_3g44270 FvH4_6g22400
malus_domestica	MD03G1015100.v1.1 MD12G1057600.v1.1 MD14G1058300.v1.1
prunus_persica	Prupe.7G076500_v2.0.a1 Prupe.7G076500_v2.0.a1
pyrus_communis	pycom03g01260 pycom12g05120 pycom14g04710
rosa_chinensis	RchiOBHm_Chr3g0479761 RchiOBHm_Chr5g0080581
rosa_laevigata	RLG00000023544 RLG00000036873
rosa_multiflora	Rmu_sc0002380.1_g000002 Rmu_sc0003755.1_g000012
rosa_roxburghii	Rroxscaffold_1G00002780 Rroxscaffold_6G00402030
rosa_rugosa	Rorug03G0178000 Rorug03G0178000 Rorug03G0178000 Rorug03G0178100 Rorug03G0178200 Rorug05G0470600
rosa_samantha	Rh3AG228900 Rh3BG262000 Rh3CG258900 Rh3DG255000 Rh5AG524000 Rh5BG546200 Rh5CG569400 Rh5DG556400
rosa_wichuraiana	Rw0G015310 Rw3G020450 Rw3G020630 Rw5G048610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccBSI	CCGCTC	2 cut(s)	135, 439
AccII	CGCG	2 cut(s)	19, 642
AccIII	TCCGGA	1 cut(s)	578
AciI	CCGC	6 cut(s)	133, 303, 409, 439, 813, 956
AclWI	GGATC	1 cut(s)	349
AcoI	YGGCCR	1 cut(s)	864
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	3 cut(s)	59, 1010, 1115
AfeI	AGCGCT	1 cut(s)	122
AgeI	ACCGGT	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	571
AjnI	CCWGG	1 cut(s)	508
AjuI	GAANNNNNNNTTGG	2 cut(s)	761, 793
AleI	CACNNNNGTG	1 cut(s)	298
AluBI	AGCT	4 cut(s)	35, 860, 1071, 1126
AluI	AGCT	4 cut(s)	35, 860, 1071, 1126
Alw26I	GTCTC	1 cut(s)	873
AlwI	GGATC	1 cut(s)	349
AlwNI	CAGNNNCTG	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	80
Aor13HI	TCCGGA	1 cut(s)	578
Aor51HI	AGCGCT	1 cut(s)	122
AoxI	GGCC	5 cut(s)	239, 551, 584, 622, 864
ApeKI	GCWGC	1 cut(s)	799
AsiGI	ACCGGT	1 cut(s)	275
AspLEI	GCGC	2 cut(s)	19, 123
AspS9I	GGNCC	3 cut(s)	585, 623, 752
AsuHPI	GGTGA	5 cut(s)	299, 800, 926, 1069, 1103
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	752
BalI	TGGCCA	1 cut(s)	866
BanII	GRGCYC	1 cut(s)	1083
BauI	CACGAG	1 cut(s)	296
BbsI	GAAGAC	2 cut(s)	679, 1099
BbvI	GCAGC	1 cut(s)	811
BccI	CCATC	3 cut(s)	107, 411, 711
BceAI	ACGGC	1 cut(s)	515
BciT130I	CCWGG	1 cut(s)	510
BclI	TGATCA	1 cut(s)	786
BcoDI	GTCTC	1 cut(s)	873
BfaI	CTAG	1 cut(s)	545
BfoI	RGCGCY	1 cut(s)	124
BisI	GCNGC	3 cut(s)	409, 800, 956
BlpI	GCTNAGC	2 cut(s)	63, 1077
BlsI	GCNGC	3 cut(s)	410, 801, 957
BmcAI	AGTACT	1 cut(s)	1010
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	1 cut(s)	752
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	3 cut(s)	585, 623, 752
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	1 cut(s)	510
BpiI	GAAGAC	2 cut(s)	679, 1099
Bpu1102I	GCTNAGC	2 cut(s)	63, 1077
BpuEI	CTTGAG	1 cut(s)	455
BsaJI	CCNNGG	2 cut(s)	79, 981
BsaWI	WCCGGW	3 cut(s)	275, 578, 1030
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	328, 851
Bse3DI	GCAATG	4 cut(s)	186, 815, 975, 1050
BseAI	TCCGGA	1 cut(s)	578
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	79, 981
BseGI	GGATG	6 cut(s)	99, 129, 201, 343, 448, 613
BseMI	GCAATG	4 cut(s)	186, 815, 975, 1050
BseMII	CTCAG	1 cut(s)	1068
BseNI	ACTGG	2 cut(s)	328, 851
BseXI	GCAGC	1 cut(s)	811
Bsh1236I	CGCG	2 cut(s)	19, 642
BshFI	GGCC	5 cut(s)	241, 553, 586, 624, 866
BshTI	ACCGGT	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	3 cut(s)	276, 579, 1031
BsiWI	CGTACG	1 cut(s)	57
BslFI	GGGAC	5 cut(s)	362, 440, 735, 857, 1039
BsmAI	GTCTC	1 cut(s)	873
BsmFI	GGGAC	5 cut(s)	362, 440, 735, 857, 1039
BsmI	GAATGC	1 cut(s)	566
BsnI	GGCC	5 cut(s)	241, 553, 586, 624, 866
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	1083
Bsp13I	TCCGGA	1 cut(s)	578
Bsp143I	GATC	5 cut(s)	354, 637, 786, 987, 996
Bsp1720I	GCTNAGC	2 cut(s)	63, 1077
Bsp68I	TCGCGA	1 cut(s)	642
BspACI	CCGC	6 cut(s)	133, 303, 409, 439, 813, 956
BspANI	GGCC	5 cut(s)	241, 553, 586, 624, 866
BspCNI	CTCAG	1 cut(s)	1069
BspEI	TCCGGA	1 cut(s)	578
BspFNI	CGCG	2 cut(s)	19, 642
BspLI	GGNNCC	1 cut(s)	430
BspPI	GGATC	1 cut(s)	349
BsrBI	CCGCTC	2 cut(s)	135, 439
BsrDI	GCAATG	4 cut(s)	186, 815, 975, 1050
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	328, 851
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	79, 981
BssMI	GATC	5 cut(s)	354, 637, 786, 987, 996
BssSI	CACGAG	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	981
Bst2BI	CACGAG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	43, 346, 871
BstC8I	GCNNGC	2 cut(s)	551, 604
BstDEI	CTNAG	2 cut(s)	63, 1077
BstEII	GGTNACC	1 cut(s)	305
BstENI	CCTNNNNNAGG	2 cut(s)	83, 896
BstF5I	GGATG	6 cut(s)	99, 129, 201, 343, 448, 613
BstFNI	CGCG	2 cut(s)	19, 642
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	2 cut(s)	19, 123
BstKTI	GATC	5 cut(s)	357, 640, 789, 990, 999
BstMAI	GTCTC	1 cut(s)	873
BstMBI	GATC	5 cut(s)	354, 637, 786, 987, 996
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 270, 408, 974, 983
BstNI	CCWGG	1 cut(s)	510
BstPI	GGTNACC	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	508
BstUI	CGCG	2 cut(s)	19, 642
BstV1I	GCAGC	1 cut(s)	811
BstV2I	GAAGAC	2 cut(s)	679, 1099
BsuRI	GGCC	5 cut(s)	241, 553, 586, 624, 866
BtgZI	GCGATG	1 cut(s)	389
BtsCI	GGATG	6 cut(s)	99, 129, 201, 343, 448, 613
BtsIMutI	CAGTG	3 cut(s)	325, 335, 342
BtuMI	TCGCGA	1 cut(s)	642
Cac8I	GCNNGC	2 cut(s)	551, 604
CaiI	CAGNNNCTG	1 cut(s)	334
CfoI	GCGC	2 cut(s)	19, 123
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	3 cut(s)	585, 623, 752
Csp6I	GTAC	3 cut(s)	58, 1009, 1114
CspAI	ACCGGT	1 cut(s)	275
CviAII	CATG	3 cut(s)	311, 390, 952
CviQI	GTAC	3 cut(s)	58, 1009, 1114
DdeI	CTNAG	2 cut(s)	63, 1077
DpnI	GATC	5 cut(s)	356, 639, 788, 989, 998
DpnII	GATC	5 cut(s)	354, 637, 786, 987, 996
EaeI	YGGCCR	1 cut(s)	864
Eco130I	CCWWGG	1 cut(s)	981
Eco24I	GRGCYC	1 cut(s)	1083
Eco47I	GGWCC	1 cut(s)	752
Eco47III	AGCGCT	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	305
EcoNI	CCTNNNNNAGG	2 cut(s)	83, 896
EcoO109I	RGGNCCY	2 cut(s)	585, 752
EcoO65I	GGTNACC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	981
EcoT38I	GRGCYC	1 cut(s)	1083
ErhI	CCWWGG	1 cut(s)	981
FaeI	CATG	3 cut(s)	314, 393, 955
FalI	AAGNNNNNCTT	4 cut(s)	983, 1015, 1091, 1123
FaqI	GGGAC	5 cut(s)	362, 440, 735, 857, 1039
FatI	CATG	3 cut(s)	310, 389, 951
FauI	CCCGC	2 cut(s)	432, 820
FauNDI	CATATG	1 cut(s)	619
FbaI	TGATCA	1 cut(s)	786
Fnu4HI	GCNGC	3 cut(s)	409, 800, 956
FokI	GGATG	6 cut(s)	86, 116, 188, 350, 455, 600
FriOI	GRGCYC	1 cut(s)	1083
Fsp4HI	GCNGC	3 cut(s)	409, 800, 956
FspBI	CTAG	1 cut(s)	545
GlaI	GCGC	2 cut(s)	18, 122
GluI	GCNGC	3 cut(s)	409, 800, 956
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	5 cut(s)	241, 553, 586, 624, 866
HapII	CCGG	3 cut(s)	276, 579, 1031
HhaI	GCGC	2 cut(s)	19, 123
Hin1II	CATG	3 cut(s)	314, 393, 955
Hin6I	GCGC	2 cut(s)	17, 121
HinP1I	GCGC	2 cut(s)	17, 121
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HinfI	GANTC	4 cut(s)	516, 830, 888, 1027
HpaII	CCGG	3 cut(s)	276, 579, 1031
HphI	GGTGA	5 cut(s)	299, 800, 926, 1069, 1103
Hpy166II	GTNNAC	3 cut(s)	769, 874, 1036
Hpy188I	TCNGA	4 cut(s)	354, 637, 667, 838
Hpy188III	TCNNGA	5 cut(s)	91, 205, 579, 641, 892
Hpy8I	GTNNAC	3 cut(s)	769, 874, 1036
Hpy99I	CGWCG	2 cut(s)	1025, 1088
HpyAV	CCTTC	6 cut(s)	148, 238, 380, 576, 1054, 1093
HpyCH4III	ACNGT	3 cut(s)	43, 346, 871
HpyCH4IV	ACGT	1 cut(s)	927
HpyCH4V	TGCA	5 cut(s)	273, 473, 652, 716, 799
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 270, 408, 974, 983
HpyF3I	CTNAG	2 cut(s)	63, 1077
HpySE526I	ACGT	1 cut(s)	927
Hsp92II	CATG	3 cut(s)	314, 393, 955
HspAI	GCGC	2 cut(s)	17, 121
Kpn2I	TCCGGA	1 cut(s)	578
Ksp22I	TGATCA	1 cut(s)	786
Kzo9I	GATC	5 cut(s)	354, 637, 786, 987, 996
LmnI	GCTCC	2 cut(s)	140, 857
Lsp1109I	GCAGC	1 cut(s)	811
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	1 cut(s)	927
MaeIII	GTNAC	2 cut(s)	305, 1091
MalI	GATC	5 cut(s)	356, 639, 788, 989, 998
MbiI	CCGCTC	2 cut(s)	135, 439
MboI	GATC	5 cut(s)	354, 637, 786, 987, 996
MboII	GAAGA	3 cut(s)	622, 679, 1099
MhlI	GDGCHC	1 cut(s)	1083
MlsI	TGGCCA	1 cut(s)	866
MluCI	AATT	1 cut(s)	24
MluNI	TGGCCA	1 cut(s)	866
MlyI	GAGTC	1 cut(s)	1021
MmeI	TCCRAC	2 cut(s)	444, 559
Mox20I	TGGCCA	1 cut(s)	866
MroI	TCCGGA	1 cut(s)	578
MscI	TGGCCA	1 cut(s)	866
MslI	CAYNNNNRTG	2 cut(s)	298, 618
Msp20I	TGGCCA	1 cut(s)	866
MspI	CCGG	3 cut(s)	276, 579, 1031
MspR9I	CCNGG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	566
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	2 cut(s)	19, 642
MwoI	GCNNNNNNNGC	5 cut(s)	14, 270, 408, 974, 983
NdeI	CATATG	1 cut(s)	619
NdeII	GATC	5 cut(s)	354, 637, 786, 987, 996
NlaIII	CATG	3 cut(s)	314, 393, 955
NlaIV	GGNNCC	1 cut(s)	430
NmuCI	GTSAC	2 cut(s)	305, 1091
NruI	TCGCGA	1 cut(s)	642
OliI	CACNNNNGTG	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	2 cut(s)	1080, 1092
PctI	GAATGC	1 cut(s)	566
PfeI	GAWTC	3 cut(s)	516, 830, 888
Pfl23II	CGTACG	1 cut(s)	57
PflFI	GACNNNGTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	334
PinAI	ACCGGT	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	410, 801, 957
PleI	GAGTC	1 cut(s)	1021
PpsI	GAGTC	1 cut(s)	1021
PpuMI	RGGWCCY	1 cut(s)	752
Psp5II	RGGWCCY	1 cut(s)	752
Psp6I	CCWGG	1 cut(s)	508
PspEI	GGTNACC	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	508
PspLI	CGTACG	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	430
PspPI	GGNCC	3 cut(s)	585, 623, 752
PspPPI	RGGWCCY	1 cut(s)	752
PsrI	GAACNNNNNNTAC	2 cut(s)	1001, 1033
PstNI	CAGNNNCTG	1 cut(s)	334
PsyI	GACNNNGTC	1 cut(s)	41
RruI	TCGCGA	1 cut(s)	642
RsaI	GTAC	3 cut(s)	59, 1010, 1115
RsaNI	GTAC	3 cut(s)	58, 1009, 1114
RseI	CAYNNNNRTG	2 cut(s)	298, 618
SatI	GCNGC	3 cut(s)	409, 800, 956
Sau3AI	GATC	5 cut(s)	354, 637, 786, 987, 996
Sau96I	GGNCC	3 cut(s)	585, 623, 752
ScaI	AGTACT	1 cut(s)	1010
SchI	GAGTC	1 cut(s)	1021
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	1 cut(s)	1083
SgrAI	CRCCGGYG	1 cut(s)	275
SinI	GGWCC	1 cut(s)	752
SmiMI	CAYNNNNRTG	2 cut(s)	298, 618
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	6 cut(s)	133, 303, 409, 439, 813, 956
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	1 cut(s)	981
TaaI	ACNGT	3 cut(s)	43, 346, 871
TaiI	ACGT	1 cut(s)	930
TaqI	TCGA	1 cut(s)	1020
TasI	AATT	1 cut(s)	24
TatI	WGTACW	1 cut(s)	1008
TauI	GCSGC	2 cut(s)	411, 958
TfiI	GAWTC	3 cut(s)	516, 830, 888
TscAI	CASTG	3 cut(s)	325, 335, 349
TseFI	GTSAC	2 cut(s)	305, 1091
TseI	GCWGC	1 cut(s)	799
Tsp45I	GTSAC	2 cut(s)	305, 1091
TspDTI	ATGAA	2 cut(s)	459, 602
TspGWI	ACGGA	6 cut(s)	45, 60, 762, 786, 900, 932
TspRI	CASTG	3 cut(s)	325, 335, 349
Tth111I	GACNNNGTC	1 cut(s)	41
Van91I	CCANNNNNTGG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	752
XagI	CCTNNNNNAGG	2 cut(s)	83, 896
XcmI	CCANNNNNNNNNTGG	1 cut(s)	387
XspI	CTAG	1 cut(s)	545
ZrmI	AGTACT	1 cut(s)	1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.