Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002963

Physical Location & Seq

Genomic Coordinates Reverse (-)

16075445 .. 16079540

Gene Structure 4096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGTGCCGGTGGAAGAATGTCTGCACCCCCAACTCGCAAGAGTGCAGAAACTGACAACATCAAGCGAGTGCCACACTTGAAACCTCCATTCACTCTCGGCCAAGTCAAGAAAGCCATCCCACCTCACTGTTTCCAGCGCTCCGTCATCCACTCCTTCTCCTATATTGTCTACGACTTCGCCATCGCCTCCATCTTTTATTACATTGCTTCAAATTACATCAACAACCTCTCAGCACCTCTCTCTTTCTTGGCATGGCCAATTTACTGGGCTCTTCAGGGCTGTGTCCTAACTGGTGTCTGGGTCATTGCACACGAGTGCGGTCACCATGCCTTTAGCGATTATCAATGGCTTGATGACACAGTTGGCCTGATCCTTCACTCCTTTCTTCTTGTCCCCTACTTCTCTTGGAAGTATAGCCATCGCCGCCACCATTCTAACACAGGTTCCCTTGAGCGAGATGAAGTCTTTGTCCCGAAACAGAAGTCTGCAATGGGATGGTGGTCCAAATACCTTAACAACCCACCAGGCAGAGTCCTTACTCTTGCTATCACACTCACTCTTGGCTGGCCTTTGTATCTGGCATTCAATGTCTCTGGAAGGCCCTATGACGGCTTTGCTTGCCACTACCATCCATATGGCCCGATCTACTCTGACCGTGAACGTCTGCAGATTTACATTTCGGATGCTGGTGTTCTTGCAGTCTGCTACGGGCTTTACCGTCTTGCTGTTGCAAAAGGGCTTGCCTGGGTCCTGTGCTTCTATGGAGGTCCCTTGTTGGTGGTGAACGCGTTTTTGGTCTTGATCACATTCTTGCAGCACACCCACCCTTCATTGCCGCACTACGATTCATCCGAATGGGACTGGTTGAGAGGAGCCTTGGCAACTGTTGACAGAGACTATGGGATCTTGAACAAGGTCTTCCATAACATCACCGACACTCATGTCGCTCACCATTTGTTCTCAACCATGCCACATTATCATGCAATGGAGGCCACAAAGGCAATCAAGCCAATATTGGGTGATTATTATCAGTTCGATGGAACCCCGTTTTACAAGGCGATGTGGAGGGAAGCCAAGGAGTGCATCTATGTTGAGCCTGATGAAGTTGATAAGAAAGGTGTCTTCTGGTACAAGAATAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045485 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 map01040 map01212

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

383

Amino Acids

43.79

Weight (kDa)

8.64

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3474	PF11960	25 - 62	3.5e-06	Domain of unknown function (DUF3474)
FA_desaturase	PF00487	85 - 345	7.3e-30	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12120 AT3G12120
fragaria_vesca	FvH4_3g44270 FvH4_6g22400
malus_domestica	MD03G1015100.v1.1 MD12G1057600.v1.1 MD14G1058300.v1.1
prunus_persica	Prupe.7G076500_v2.0.a1 Prupe.7G076500_v2.0.a1
pyrus_communis	pycom03g01260 pycom12g05120 pycom14g04710
rosa_chinensis	RchiOBHm_Chr3g0479761 RchiOBHm_Chr5g0080581
rosa_laevigata	RLG00000023544 RLG00000036873
rosa_multiflora	Rmu_sc0002380.1_g000002 Rmu_sc0003755.1_g000012
rosa_roxburghii	Rroxscaffold_1G00002780 Rroxscaffold_6G00402030
rosa_rugosa	Rorug03G0178000 Rorug03G0178000 Rorug03G0178000 Rorug03G0178100 Rorug03G0178200 Rorug05G0470600
rosa_samantha	Rh3AG228900 Rh3BG262000 Rh3CG258900 Rh3DG255000 Rh5AG524000 Rh5BG546200 Rh5CG569400 Rh5DG556400
rosa_wichuraiana	Rw0G015310 Rw3G020450 Rw3G020630 Rw5G048610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	944
AccB1I	GGYRCC	1 cut(s)	5
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	1 cut(s)	791
AciI	CCGC	3 cut(s)	321, 427, 839
AclWI	GGATC	2 cut(s)	367, 914
AcoI	YGGCCR	2 cut(s)	100, 257
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	1133
AfeI	AGCGCT	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	611, 1019
AflIII	ACRYGT	1 cut(s)	789
AgsI	TTSAA	4 cut(s)	82, 213, 589, 913
AjnI	CCWGG	2 cut(s)	526, 746
AjuI	GAANNNNNNNTTGG	2 cut(s)	779, 811
AleI	CACNNNNGTG	1 cut(s)	316
AluBI	AGCT	1 cut(s)	1144
AluI	AGCT	1 cut(s)	1144
Alw26I	GTCTC	2 cut(s)	598, 891
AlwI	GGATC	2 cut(s)	367, 914
AlwNI	CAGNNNCTG	1 cut(s)	53
Aor51HI	AGCGCT	1 cut(s)	140
AoxI	GGCC	7 cut(s)	100, 257, 367, 569, 602, 640, 993
ApeKI	GCWGC	1 cut(s)	817
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	5 cut(s)	504, 603, 641, 751, 770
AsuHPI	GGTGA	5 cut(s)	317, 796, 925, 944, 1034
AvaII	GGWCC	3 cut(s)	504, 751, 770
BalI	TGGCCA	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	274
BauI	CACGAG	1 cut(s)	314
BbsI	GAAGAC	2 cut(s)	913, 1117
BbvI	GCAGC	1 cut(s)	829
BccI	CCATC	7 cut(s)	125, 191, 200, 429, 492, 639, 1034
BceAI	ACGGC	1 cut(s)	628
BciT130I	CCWGG	2 cut(s)	528, 748
BclI	TGATCA	1 cut(s)	804
BcoDI	GTCTC	2 cut(s)	598, 891
BfmI	CTRYAG	1 cut(s)	668
BfoI	RGCGCY	1 cut(s)	142
BglI	GCCNNNNNGGC	1 cut(s)	1001
BisI	GCNGC	3 cut(s)	427, 818, 839
BlsI	GCNGC	3 cut(s)	428, 819, 840
Bme1390I	CCNGG	2 cut(s)	528, 748
Bme18I	GGWCC	3 cut(s)	504, 751, 770
BmgT120I	GGNCC	5 cut(s)	504, 603, 641, 751, 770
BmiI	GGNNCC	6 cut(s)	7, 448, 752, 772, 877, 1045
BmrFI	CCNGG	2 cut(s)	528, 748
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	2 cut(s)	676, 1095
BmuI	ACTGGG	1 cut(s)	277
BpiI	GAAGAC	2 cut(s)	913, 1117
BpuEI	CTTGAG	1 cut(s)	473
BsaBI	GATNNNNATC	1 cut(s)	1029
BsaJI	CCNNGG	3 cut(s)	747, 879, 1077
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	2 cut(s)	611, 1019
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	3 cut(s)	272, 298, 869
Bse3DI	GCAATG	5 cut(s)	204, 306, 498, 833, 993
Bse8I	GATNNNNATC	1 cut(s)	1029
BseBI	CCWGG	2 cut(s)	528, 748
BseDI	CCNNGG	3 cut(s)	747, 879, 1077
BseGI	GGATG	6 cut(s)	117, 147, 503, 631, 691, 851
BseJI	GATNNNNATC	1 cut(s)	1029
BseLI	CCNNNNNNNGG	2 cut(s)	611, 1019
BseMI	GCAATG	5 cut(s)	204, 306, 498, 833, 993
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	3 cut(s)	272, 298, 869
BseRI	GAGGAG	1 cut(s)	888
BseXI	GCAGC	1 cut(s)	829
BsgI	GTGCAG	2 cut(s)	9, 66
Bsh1236I	CGCG	1 cut(s)	791
BshFI	GGCC	7 cut(s)	102, 259, 369, 571, 604, 642, 995
BshNI	GGYRCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	4 cut(s)	380, 458, 756, 875
BslI	CCNNNNNNNGG	2 cut(s)	611, 1019
BsmAI	GTCTC	2 cut(s)	598, 891
BsmFI	GGGAC	4 cut(s)	380, 458, 756, 875
BsmI	GAATGC	1 cut(s)	584
BsnI	GGCC	7 cut(s)	102, 259, 369, 571, 604, 642, 995
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	4 cut(s)	372, 645, 804, 906
BspACI	CCGC	3 cut(s)	321, 427, 839
BspANI	GGCC	7 cut(s)	102, 259, 369, 571, 604, 642, 995
BspCNI	CTCAG	1 cut(s)	245
BspFNI	CGCG	1 cut(s)	791
BspLI	GGNNCC	6 cut(s)	7, 448, 752, 772, 877, 1045
BspMAI	CTGCAG	1 cut(s)	672
BspPI	GGATC	2 cut(s)	367, 914
BspQI	GCTCTTC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	5
BsrDI	GCAATG	5 cut(s)	204, 306, 498, 833, 993
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	3 cut(s)	272, 298, 869
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	3 cut(s)	747, 879, 1077
BssMI	GATC	4 cut(s)	372, 645, 804, 906
BssSI	CACGAG	1 cut(s)	314
BssT1I	CCWWGG	2 cut(s)	879, 1077
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	2 cut(s)	528, 748
Bst4CI	ACNGT	5 cut(s)	131, 364, 659, 722, 889
Bst6I	CTCTTC	1 cut(s)	279
BstC8I	GCNNGC	3 cut(s)	569, 622, 744
BstDEI	CTNAG	1 cut(s)	232
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	6 cut(s)	117, 147, 503, 631, 691, 851
BstFNI	CGCG	1 cut(s)	791
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	4 cut(s)	375, 648, 807, 909
BstMAI	GTCTC	2 cut(s)	598, 891
BstMBI	GATC	4 cut(s)	372, 645, 804, 906
BstMWI	GCNNNNNNNGC	4 cut(s)	426, 621, 992, 1001
BstNI	CCWGG	2 cut(s)	528, 748
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	526, 746
BstSFI	CTRYAG	1 cut(s)	668
BstUI	CGCG	1 cut(s)	791
BstV1I	GCAGC	1 cut(s)	829
BstV2I	GAAGAC	2 cut(s)	913, 1117
BstX2I	RGATCY	1 cut(s)	906
BstXI	CCANNNNNNTGG	2 cut(s)	267, 638
BstYI	RGATCY	1 cut(s)	906
BsuRI	GGCC	7 cut(s)	102, 259, 369, 571, 604, 642, 995
BtgZI	GCGATG	3 cut(s)	169, 407, 1076
BtsCI	GGATG	6 cut(s)	117, 147, 503, 631, 691, 851
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	3 cut(s)	569, 622, 744
CaiI	CAGNNNCTG	1 cut(s)	53
CfoI	GCGC	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	5 cut(s)	504, 603, 641, 751, 770
Csp6I	GTAC	1 cut(s)	1132
CviAII	CATG	5 cut(s)	255, 329, 944, 970, 983
CviQI	GTAC	1 cut(s)	1132
DdeI	CTNAG	1 cut(s)	232
DpnI	GATC	4 cut(s)	374, 647, 806, 908
DpnII	GATC	4 cut(s)	372, 645, 804, 906
DrdI	GACNNNNNNGTC	1 cut(s)	944
DseDI	GACNNNNNNGTC	1 cut(s)	944
EaeI	YGGCCR	2 cut(s)	100, 257
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco130I	CCWWGG	2 cut(s)	879, 1077
Eco24I	GRGCYC	1 cut(s)	274
Eco47I	GGWCC	3 cut(s)	504, 751, 770
Eco47III	AGCGCT	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	260
Eco91I	GGTNACC	1 cut(s)	323
EcoO109I	RGGNCCY	3 cut(s)	603, 751, 770
EcoO65I	GGTNACC	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	526, 746
EcoT14I	CCWWGG	2 cut(s)	879, 1077
EcoT38I	GRGCYC	1 cut(s)	274
ErhI	CCWWGG	2 cut(s)	879, 1077
FaeI	CATG	5 cut(s)	258, 332, 947, 973, 986
FaqI	GGGAC	4 cut(s)	380, 458, 756, 875
FatI	CATG	5 cut(s)	254, 328, 943, 969, 982
FauNDI	CATATG	1 cut(s)	637
FbaI	TGATCA	1 cut(s)	804
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	427, 818, 839
FokI	GGATG	6 cut(s)	104, 134, 510, 618, 698, 838
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	3 cut(s)	427, 818, 839
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	3 cut(s)	427, 818, 839
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	7 cut(s)	102, 259, 369, 571, 604, 642, 995
HapII	CCGG	1 cut(s)	9
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	5 cut(s)	258, 332, 947, 973, 986
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	892
HindII	GTYRAC	1 cut(s)	892
HinfI	GANTC	2 cut(s)	534, 848
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	5 cut(s)	317, 796, 925, 944, 1034
Hpy166II	GTNNAC	4 cut(s)	172, 662, 787, 892
Hpy188I	TCNGA	3 cut(s)	655, 685, 856
Hpy188III	TCNNGA	5 cut(s)	109, 475, 597, 802, 910
Hpy8I	GTNNAC	4 cut(s)	172, 662, 787, 892
HpyAV	CCTTC	4 cut(s)	166, 386, 594, 840
HpyCH4III	ACNGT	5 cut(s)	131, 364, 659, 722, 889
HpyCH4IV	ACGT	1 cut(s)	664
HpyF10VI	GCNNNNNNNGC	4 cut(s)	426, 621, 992, 1001
HpyF3I	CTNAG	1 cut(s)	232
HpySE526I	ACGT	1 cut(s)	664
Hsp92II	CATG	5 cut(s)	258, 332, 947, 973, 986
HspAI	GCGC	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	804
Kzo9I	GATC	4 cut(s)	372, 645, 804, 906
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	2 cut(s)	146, 875
Lsp1109I	GCAGC	1 cut(s)	829
LweI	GCATC	2 cut(s)	676, 1095
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	4 cut(s)	374, 647, 806, 908
MboI	GATC	4 cut(s)	372, 645, 804, 906
MboII	GAAGA	5 cut(s)	27, 266, 380, 913, 1117
MflI	RGATCY	1 cut(s)	906
MhlI	GDGCHC	1 cut(s)	274
MlsI	TGGCCA	1 cut(s)	259
MluCI	AATT	2 cut(s)	214, 261
MluI	ACGCGT	1 cut(s)	789
MluNI	TGGCCA	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	543
MnlI	CCTC	9 cut(s)	96, 135, 199, 239, 249, 761, 866, 985, 1062
Mox20I	TGGCCA	1 cut(s)	259
MscI	TGGCCA	1 cut(s)	259
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	4 cut(s)	316, 636, 856, 981
Msp20I	TGGCCA	1 cut(s)	259
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	2 cut(s)	528, 748
Mva1269I	GAATGC	1 cut(s)	584
MvaI	CCWGG	2 cut(s)	528, 748
MvnI	CGCG	1 cut(s)	791
MwoI	GCNNNNNNNGC	4 cut(s)	426, 621, 992, 1001
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	4 cut(s)	372, 645, 804, 906
NlaIII	CATG	5 cut(s)	258, 332, 947, 973, 986
NlaIV	GGNNCC	6 cut(s)	7, 448, 752, 772, 877, 1045
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	323
OliI	CACNNNNGTG	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	1 cut(s)	852
PctI	GAATGC	1 cut(s)	584
PfeI	GAWTC	1 cut(s)	848
PkrI	GCNGC	3 cut(s)	428, 819, 840
PleI	GAGTC	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	542
PpuMI	RGGWCCY	2 cut(s)	751, 770
Psp5II	RGGWCCY	2 cut(s)	751, 770
Psp6I	CCWGG	2 cut(s)	526, 746
PspEI	GGTNACC	1 cut(s)	323
PspGI	CCWGG	2 cut(s)	526, 746
PspN4I	GGNNCC	6 cut(s)	7, 448, 752, 772, 877, 1045
PspPI	GGNCC	5 cut(s)	504, 603, 641, 751, 770
PspPPI	RGGWCCY	2 cut(s)	751, 770
PstI	CTGCAG	1 cut(s)	672
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	906
RsaI	GTAC	1 cut(s)	1133
RsaNI	GTAC	1 cut(s)	1132
RseI	CAYNNNNRTG	4 cut(s)	316, 636, 856, 981
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	3 cut(s)	427, 818, 839
Sau3AI	GATC	4 cut(s)	372, 645, 804, 906
Sau96I	GGNCC	5 cut(s)	504, 603, 641, 751, 770
SchI	GAGTC	1 cut(s)	543
ScrFI	CCNGG	2 cut(s)	528, 748
SduI	GDGCHC	1 cut(s)	274
SfaNI	GCATC	2 cut(s)	676, 1095
SfcI	CTRYAG	1 cut(s)	668
SinI	GGWCC	3 cut(s)	504, 751, 770
SmiMI	CAYNNNNRTG	4 cut(s)	316, 636, 856, 981
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	2 cut(s)	214, 261
SsiI	CCGC	3 cut(s)	321, 427, 839
SspI	AATATT	1 cut(s)	1017
StyD4I	CCNGG	2 cut(s)	526, 746
StyI	CCWWGG	2 cut(s)	879, 1077
TaaI	ACNGT	5 cut(s)	131, 364, 659, 722, 889
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	1 cut(s)	1038
TasI	AATT	2 cut(s)	214, 261
TauI	GCSGC	2 cut(s)	429, 841
TfiI	GAWTC	1 cut(s)	848
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	817
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	4 cut(s)	477, 822, 840, 1119
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	134
VpaK11BI	GGWCC	3 cut(s)	504, 751, 770
XmiI	GTMKAC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.