Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002963

Physical Location & Seq

Genomic Coordinates Reverse (-)

25529844 .. 25534085

Gene Structure 4242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44482

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGTGCTGGTGGAAGAATGTCTGCACCCCCAACTCGCAAGAATGCAGAAACTGACAACATCAAGCGAGTGCCACACCTGAAACCTCCATTCACTCTTGGCCAAGTCAAGAAAGCCATCCCACCTCACTGTTTCCAGCGCTCCGTCATCCACTCTTTCTCCTATGTCGTCTATGACCTCGCAATTGCCTCCATCTTTTATTATATTGCTTCAAATTACATCAACCACCTCTCGACACCTCTCTCATTCCTGGCATGGCCAATTTACTGGGCTCTTCAGGGCTGTGTCCTAACTGGTGTCTGGGTCATTGCACACGAGTGTGGTCACCATGCCTTTAGCGATTATCAATGGCTTGATGACACAGTTGGCCTAGTCCTGCACTCCTGTCTTCTCGTCCCCTACTTCTCTTGGAAGTATAGCCATCGCCGCCACCATTCTAACACAGGTTCCCTTGAGCGAGATGAAGTCTTTGTCCCAAAACAGAAGTCTGCTATGGGATGGTACTCCAAATACCTTAACAACCCACCAGGCAGAGTCCTTACTCTAACTGTCACACTCACTCTTGGCTGGCCTTTGTATTTGGCATTTAATGTTTCTGGAAGGCCCTATGACGGCTTTGCTTGCCACTACCATCCATATGGCCCTATCTACTCCGATCGTGAACGTTTGCAGATATACATTTCGGATGCTGGTGTTCTTGCAGTCTGTTATGGGCTTTACCGTCTTGCTGTTGCAAAAGGGCTTGCCTGGGTCTTGTGCTTCTATGGAGGTCCCTTGTTGGTGGTGAATGCGTTTTTGGTTTTAATCACATATTTGCAGCACACCCACCCTTCATTGCCACACTATGATTCATCCGAATGGGACTGGTTGAGAGGAGCCTTGGCAACTGTTGACAGAGACTATGGAATCTTGAACAAGGTCTTCCATAACATCACAGACACTCATGTCGCTCACCATTTGTTCTCAACCATGCCACATTATCACGCAATGGAGGCCACAAAGGCAATCAAGCCGATATTGGGCGAGTATTATCAGTTCGATGGGACTCCATTTTACAAAGCAATGTGGAGGGAAGCAAAGGAGTGCATCTACGTTGAGCCAGATGAAGTTGATAAGAAGGGTGTCTTCTGGTACAAGAATAAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045485 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 map01040 map01212

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

382

Amino Acids

43.79

Weight (kDa)

8.59

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3474	PF11960	25 - 62	6.9e-07	Domain of unknown function (DUF3474)
FA_desaturase	PF00487	85 - 345	6.3e-31	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12120 AT3G12120
fragaria_vesca	FvH4_3g44270 FvH4_6g22400
malus_domestica	MD03G1015100.v1.1 MD12G1057600.v1.1 MD14G1058300.v1.1
prunus_persica	Prupe.7G076500_v2.0.a1 Prupe.7G076500_v2.0.a1
pyrus_communis	pycom03g01260 pycom12g05120 pycom14g04710
rosa_chinensis	RchiOBHm_Chr3g0479761 RchiOBHm_Chr5g0080581
rosa_laevigata	RLG00000023544 RLG00000036873
rosa_multiflora	Rmu_sc0002380.1_g000002 Rmu_sc0003755.1_g000012
rosa_roxburghii	Rroxscaffold_1G00002780 Rroxscaffold_6G00402030
rosa_rugosa	Rorug03G0178000 Rorug03G0178000 Rorug03G0178000 Rorug03G0178100 Rorug03G0178200 Rorug05G0470600
rosa_samantha	Rh3AG228900 Rh3BG262000 Rh3CG258900 Rh3DG255000 Rh5AG524000 Rh5BG546200 Rh5CG569400 Rh5DG556400
rosa_wichuraiana	Rw0G015310 Rw3G020450 Rw3G020630 Rw5G048610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	944
AciI	CCGC	1 cut(s)	427
AclI	AACGTT	1 cut(s)	664
AcoI	YGGCCR	2 cut(s)	100, 257
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	2 cut(s)	503, 1133
AfeI	AGCGCT	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	611, 1019
AgsI	TTSAA	2 cut(s)	213, 913
AjnI	CCWGG	3 cut(s)	249, 526, 746
AjuI	GAANNNNNNNTTGG	2 cut(s)	779, 811
AleI	CACNNNNGTG	2 cut(s)	316, 318
AluBI	AGCT	1 cut(s)	1144
AluI	AGCT	1 cut(s)	1144
Alw26I	GTCTC	1 cut(s)	891
AlwNI	CAGNNNCTG	1 cut(s)	53
Aor51HI	AGCGCT	1 cut(s)	140
AoxI	GGCC	7 cut(s)	100, 257, 367, 569, 602, 640, 993
ApeKI	GCWGC	1 cut(s)	817
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	3 cut(s)	603, 641, 770
AsuHPI	GGTGA	3 cut(s)	317, 796, 944
AvaII	GGWCC	1 cut(s)	770
BalI	TGGCCA	2 cut(s)	102, 259
BanII	GRGCYC	1 cut(s)	274
BauI	CACGAG	1 cut(s)	314
BbsI	GAAGAC	3 cut(s)	380, 913, 1117
BbvI	GCAGC	1 cut(s)	829
BccI	CCATC	6 cut(s)	125, 200, 429, 492, 639, 1034
BceAI	ACGGC	1 cut(s)	628
BciT130I	CCWGG	3 cut(s)	251, 528, 748
BcoDI	GTCTC	1 cut(s)	891
BfaI	CTAG	1 cut(s)	371
BfoI	RGCGCY	1 cut(s)	142
BglI	GCCNNNNNGGC	1 cut(s)	1001
BisI	GCNGC	2 cut(s)	427, 818
BlsI	GCNGC	2 cut(s)	428, 819
Bme1390I	CCNGG	3 cut(s)	251, 528, 748
Bme18I	GGWCC	1 cut(s)	770
BmgT120I	GGNCC	3 cut(s)	603, 641, 770
BmiI	GGNNCC	3 cut(s)	448, 772, 877
BmrFI	CCNGG	3 cut(s)	251, 528, 748
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	2 cut(s)	676, 1095
BmuI	ACTGGG	1 cut(s)	277
BpiI	GAAGAC	3 cut(s)	380, 913, 1117
BpuEI	CTTGAG	1 cut(s)	473
BsaJI	CCNNGG	2 cut(s)	747, 879
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	2 cut(s)	611, 1019
Bse1I	ACTGG	3 cut(s)	272, 298, 869
Bse3DI	GCAATG	4 cut(s)	306, 833, 993, 1068
BseBI	CCWGG	3 cut(s)	251, 528, 748
BseDI	CCNNGG	2 cut(s)	747, 879
BseGI	GGATG	6 cut(s)	117, 147, 503, 631, 691, 851
BseLI	CCNNNNNNNGG	2 cut(s)	611, 1019
BseMI	GCAATG	4 cut(s)	306, 833, 993, 1068
BseNI	ACTGG	3 cut(s)	272, 298, 869
BseRI	GAGGAG	1 cut(s)	888
BseXI	GCAGC	1 cut(s)	829
BsgI	GTGCAG	2 cut(s)	9, 362
Bsh1285I	CGRYCG	1 cut(s)	658
BshFI	GGCC	7 cut(s)	102, 259, 369, 571, 604, 642, 995
BsiEI	CGRYCG	1 cut(s)	658
BslFI	GGGAC	5 cut(s)	380, 458, 756, 875, 1057
BslI	CCNNNNNNNGG	2 cut(s)	611, 1019
BsmAI	GTCTC	1 cut(s)	891
BsmFI	GGGAC	5 cut(s)	380, 458, 756, 875, 1057
BsmI	GAATGC	2 cut(s)	49, 793
BsnI	GGCC	7 cut(s)	102, 259, 369, 571, 604, 642, 995
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	655
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	7 cut(s)	102, 259, 369, 571, 604, 642, 995
BspLI	GGNNCC	3 cut(s)	448, 772, 877
BspQI	GCTCTTC	1 cut(s)	279
BsrDI	GCAATG	4 cut(s)	306, 833, 993, 1068
BsrI	ACTGG	3 cut(s)	272, 298, 869
BssECI	CCNNGG	2 cut(s)	747, 879
BssMI	GATC	1 cut(s)	655
BssSI	CACGAG	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	879
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	3 cut(s)	251, 528, 748
Bst4CI	ACNGT	5 cut(s)	131, 364, 550, 722, 889
Bst6I	CTCTTC	1 cut(s)	279
BstC8I	GCNNGC	3 cut(s)	569, 622, 744
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	6 cut(s)	117, 147, 503, 631, 691, 851
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	1 cut(s)	658
BstMAI	GTCTC	1 cut(s)	891
BstMBI	GATC	1 cut(s)	655
BstMCI	CGRYCG	1 cut(s)	658
BstMWI	GCNNNNNNNGC	4 cut(s)	426, 621, 992, 1001
BstNI	CCWGG	3 cut(s)	251, 528, 748
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	3 cut(s)	249, 526, 746
BstV1I	GCAGC	1 cut(s)	829
BstV2I	GAAGAC	3 cut(s)	380, 913, 1117
BstXI	CCANNNNNNTGG	2 cut(s)	267, 638
BsuRI	GGCC	7 cut(s)	102, 259, 369, 571, 604, 642, 995
BtgZI	GCGATG	1 cut(s)	407
BtsCI	GGATG	6 cut(s)	117, 147, 503, 631, 691, 851
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	3 cut(s)	569, 622, 744
CaiI	CAGNNNCTG	1 cut(s)	53
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	3 cut(s)	603, 641, 770
Csp6I	GTAC	2 cut(s)	502, 1132
CviAII	CATG	4 cut(s)	255, 329, 944, 970
CviQI	GTAC	2 cut(s)	502, 1132
DpnI	GATC	1 cut(s)	657
DpnII	GATC	1 cut(s)	655
DrdI	GACNNNNNNGTC	1 cut(s)	944
DseDI	GACNNNNNNGTC	1 cut(s)	944
EaeI	YGGCCR	2 cut(s)	100, 257
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	879
Eco24I	GRGCYC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	770
Eco47III	AGCGCT	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	260
Eco91I	GGTNACC	1 cut(s)	323
EcoO109I	RGGNCCY	2 cut(s)	603, 770
EcoO65I	GGTNACC	1 cut(s)	323
EcoRII	CCWGG	3 cut(s)	249, 526, 746
EcoT14I	CCWWGG	1 cut(s)	879
EcoT38I	GRGCYC	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	879
FaeI	CATG	4 cut(s)	258, 332, 947, 973
FalI	AAGNNNNNCTT	2 cut(s)	1109, 1141
FaqI	GGGAC	5 cut(s)	380, 458, 756, 875, 1057
FatI	CATG	4 cut(s)	254, 328, 943, 969
FauNDI	CATATG	1 cut(s)	637
Fnu4HI	GCNGC	2 cut(s)	427, 818
FokI	GGATG	6 cut(s)	104, 134, 510, 618, 698, 838
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	2 cut(s)	427, 818
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	2 cut(s)	427, 818
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	7 cut(s)	102, 259, 369, 571, 604, 642, 995
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	4 cut(s)	258, 332, 947, 973
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	892
HindII	GTYRAC	1 cut(s)	892
HinfI	GANTC	4 cut(s)	534, 848, 906, 1045
HphI	GGTGA	3 cut(s)	317, 796, 944
Hpy166II	GTNNAC	2 cut(s)	662, 892
Hpy188I	TCNGA	3 cut(s)	655, 685, 856
Hpy188III	TCNNGA	5 cut(s)	109, 232, 597, 659, 910
Hpy8I	GTNNAC	2 cut(s)	662, 892
HpyAV	CCTTC	3 cut(s)	594, 840, 1111
HpyCH4III	ACNGT	5 cut(s)	131, 364, 550, 722, 889
HpyCH4IV	ACGT	2 cut(s)	664, 1092
HpyCH4V	TGCA	9 cut(s)	26, 47, 311, 379, 670, 701, 734, 817, 1086
HpyF10VI	GCNNNNNNNGC	4 cut(s)	426, 621, 992, 1001
HpySE526I	ACGT	2 cut(s)	664, 1092
Hsp92II	CATG	4 cut(s)	258, 332, 947, 973
HspAI	GCGC	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	655
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	2 cut(s)	146, 875
Lsp1109I	GCAGC	1 cut(s)	829
LweI	GCATC	2 cut(s)	676, 1095
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	2 cut(s)	664, 1092
MaeIII	GTNAC	2 cut(s)	323, 550
MalI	GATC	1 cut(s)	657
MboI	GATC	1 cut(s)	655
MboII	GAAGA	5 cut(s)	27, 266, 380, 913, 1117
MfeI	CAATTG	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	274
MlsI	TGGCCA	2 cut(s)	102, 259
MluCI	AATT	3 cut(s)	183, 214, 261
MluNI	TGGCCA	2 cut(s)	102, 259
MlyI	GAGTC	2 cut(s)	543, 1039
Mox20I	TGGCCA	2 cut(s)	102, 259
MscI	TGGCCA	2 cut(s)	102, 259
MseI	TTAA	3 cut(s)	516, 588, 803
MslI	CAYNNNNRTG	4 cut(s)	316, 318, 636, 856
Msp20I	TGGCCA	2 cut(s)	102, 259
MspR9I	CCNGG	3 cut(s)	251, 528, 748
MunI	CAATTG	1 cut(s)	183
Mva1269I	GAATGC	2 cut(s)	49, 793
MvaI	CCWGG	3 cut(s)	251, 528, 748
MwoI	GCNNNNNNNGC	4 cut(s)	426, 621, 992, 1001
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	1 cut(s)	655
NlaIII	CATG	4 cut(s)	258, 332, 947, 973
NlaIV	GGNNCC	3 cut(s)	448, 772, 877
NmuCI	GTSAC	2 cut(s)	323, 550
OliI	CACNNNNGTG	2 cut(s)	316, 318
PciSI	GCTCTTC	1 cut(s)	279
PctI	GAATGC	2 cut(s)	49, 793
PfeI	GAWTC	2 cut(s)	848, 906
PkrI	GCNGC	2 cut(s)	428, 819
Ple19I	CGATCG	1 cut(s)	658
PleI	GAGTC	2 cut(s)	542, 1039
PpsI	GAGTC	2 cut(s)	542, 1039
PpuMI	RGGWCCY	1 cut(s)	770
Psp1406I	AACGTT	1 cut(s)	664
Psp5II	RGGWCCY	1 cut(s)	770
Psp6I	CCWGG	3 cut(s)	249, 526, 746
PspEI	GGTNACC	1 cut(s)	323
PspGI	CCWGG	3 cut(s)	249, 526, 746
PspN4I	GGNNCC	3 cut(s)	448, 772, 877
PspPI	GGNCC	3 cut(s)	603, 641, 770
PspPPI	RGGWCCY	1 cut(s)	770
PsrI	GAACNNNNNNTAC	2 cut(s)	1019, 1051
PstNI	CAGNNNCTG	1 cut(s)	53
PvuI	CGATCG	1 cut(s)	658
RsaI	GTAC	2 cut(s)	503, 1133
RsaNI	GTAC	2 cut(s)	502, 1132
RseI	CAYNNNNRTG	4 cut(s)	316, 318, 636, 856
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	3 cut(s)	516, 588, 803
SatI	GCNGC	2 cut(s)	427, 818
Sau3AI	GATC	1 cut(s)	655
Sau96I	GGNCC	3 cut(s)	603, 641, 770
SchI	GAGTC	2 cut(s)	543, 1039
ScrFI	CCNGG	3 cut(s)	251, 528, 748
SduI	GDGCHC	1 cut(s)	274
SfaNI	GCATC	2 cut(s)	676, 1095
SinI	GGWCC	1 cut(s)	770
SmiMI	CAYNNNNRTG	4 cut(s)	316, 318, 636, 856
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	3 cut(s)	183, 214, 261
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	3 cut(s)	249, 526, 746
StyI	CCWWGG	1 cut(s)	879
TaaI	ACNGT	5 cut(s)	131, 364, 550, 722, 889
TaiI	ACGT	2 cut(s)	667, 1095
TaqI	TCGA	2 cut(s)	233, 1038
TasI	AATT	3 cut(s)	183, 214, 261
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	2 cut(s)	848, 906
Tru1I	TTAA	3 cut(s)	516, 588, 803
Tru9I	TTAA	3 cut(s)	516, 588, 803
TscAI	CASTG	1 cut(s)	134
TseFI	GTSAC	2 cut(s)	323, 550
TseI	GCWGC	1 cut(s)	817
Tsp45I	GTSAC	2 cut(s)	323, 550
TspDTI	ATGAA	4 cut(s)	477, 822, 840, 1119
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	770
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.