Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002963

Physical Location & Seq

Genomic Coordinates Forward (+)

64711695 .. 64715272

Gene Structure 3578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0470600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTCCTGGCATCAAGGCTTTACTTCTATCACTCTCTTAGCTATGAATATACCGGTGATCTCGCAGAAATTAGAGGGGAGTAGCTTAAGTCAGTCATCTTTCGTCCAGGTTATTAAGCTACATGAGGAATTTTTTCTCCCAGGAGAAGTGATAATGGAACCTGGAAATGTGGTAGATCAAATTTATTTTGTCTGTCATGGTGTACTGGAGGAGGTGGGTTTAGGGGAAGATGGATCAGAAGAAACAGTTTTGCTTTTGCAACCTAACAGCTCATTTGGACAAGTCTCCATCCTTTGCAACATTCCCCAACCTTATACAGTTAGGGTGTGTGAACTGTGCAGGCTTCTGCGACTGGATAAACAATCATTTTCAAGTATCCTTGACATATACTTTTATGATGGGCGGAGAATCTTGAACAACCTTCTAGAGGGTAAAGGACCTCATATCAAGCAACTAGAATCAGACATTACTTTCCATATTGGAAAGCAAGAAGCTGAACTTTCTTTGAAGGTGAATAGTGCTGCTTATCATGGAGATCTGCATCAGCTAAAATGTTTGATCCGAGCTGGAGCTGATCCCAACAAGACAGATTATGATGGAAGGTCACCCTTGGATCGATGGCTTAAGAGATCGAAAGACTGCTTATCATCTTTGCCTACAAGAGAGCTTCTGCAAGAACAAATGAAGGTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016021 GO:0016491 GO:0016705 GO:0016709 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050183 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 map01040 map01212

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

231

Amino Acids

26.06

Weight (kDa)

5.61

Isoelectric Point (pI)

65.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	43 - 128	3.7e-17	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12120 AT3G12120
fragaria_vesca	FvH4_3g44270 FvH4_6g22400
malus_domestica	MD03G1015100.v1.1 MD12G1057600.v1.1 MD14G1058300.v1.1
prunus_persica	Prupe.7G076500_v2.0.a1 Prupe.7G076500_v2.0.a1
pyrus_communis	pycom03g01260 pycom12g05120 pycom14g04710
rosa_chinensis	RchiOBHm_Chr3g0479761 RchiOBHm_Chr5g0080581
rosa_laevigata	RLG00000023544 RLG00000036873
rosa_multiflora	Rmu_sc0002380.1_g000002 Rmu_sc0003755.1_g000012
rosa_roxburghii	Rroxscaffold_1G00002780 Rroxscaffold_6G00402030
rosa_rugosa	Rorug03G0178000 Rorug03G0178000 Rorug03G0178000 Rorug03G0178100 Rorug03G0178200 Rorug05G0470600
rosa_samantha	Rh3AG228900 Rh3BG262000 Rh3CG258900 Rh3DG255000 Rh5AG524000 Rh5BG546200 Rh5CG569400 Rh5DG556400
rosa_wichuraiana	Rw0G015310 Rw3G020450 Rw3G020630 Rw5G048610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	403
AclWI	GGATC	4 cut(s)	241, 553, 569, 621
AcsI	RAATTY	2 cut(s)	128, 180
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	427
AflII	CTTAAG	2 cut(s)	85, 623
AgeI	ACCGGT	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	372, 415, 508
AjnI	CCWGG	4 cut(s)	5, 105, 139, 160
AluBI	AGCT	9 cut(s)	41, 84, 118, 270, 494, 547, 566, 572, 667
AluI	AGCT	9 cut(s)	41, 84, 118, 270, 494, 547, 566, 572, 667
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	4 cut(s)	241, 553, 569, 621
ApeKI	GCWGC	1 cut(s)	521
ApoI	RAATTY	2 cut(s)	128, 180
AsiGI	ACCGGT	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	3 cut(s)	67, 523, 597
AvaII	GGWCC	1 cut(s)	437
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	5 cut(s)	224, 296, 392, 590, 612
BciT130I	CCWGG	4 cut(s)	7, 107, 141, 162
BciVI	GTATCC	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	2 cut(s)	425, 455
BfrI	CTTAAG	2 cut(s)	85, 623
BfuI	GTATCC	1 cut(s)	386
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	523
Bme1390I	CCNGG	4 cut(s)	7, 107, 141, 162
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	4 cut(s)	7, 107, 141, 162
BmsI	GCATC	2 cut(s)	19, 550
BpmI	CTGGAG	2 cut(s)	227, 588
Bsa29I	ATCGAT	1 cut(s)	616
BsaBI	GATNNNNATC	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	139, 609
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	2 cut(s)	210, 357
Bse8I	GATNNNNATC	1 cut(s)	540
BseBI	CCWGG	4 cut(s)	7, 107, 141, 162
BseCI	ATCGAT	1 cut(s)	616
BseDI	CCNNGG	2 cut(s)	139, 609
BseGI	GGATG	1 cut(s)	288
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseNI	ACTGG	2 cut(s)	210, 357
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	508
BsgI	GTGCAG	1 cut(s)	358
BshTI	ACCGGT	1 cut(s)	52
BshVI	ATCGAT	1 cut(s)	616
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	289
Bsp143I	GATC	8 cut(s)	57, 175, 233, 535, 558, 574, 613, 629
BspACI	CCGC	1 cut(s)	403
BspDI	ATCGAT	1 cut(s)	616
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	4 cut(s)	241, 553, 569, 621
BspTI	CTTAAG	2 cut(s)	85, 623
BsrFI	RCCGGY	1 cut(s)	52
BsrI	ACTGG	2 cut(s)	210, 357
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	2 cut(s)	139, 609
BssMI	GATC	8 cut(s)	57, 175, 233, 535, 558, 574, 613, 629
BssT1I	CCWWGG	1 cut(s)	609
Bst2UI	CCWGG	4 cut(s)	7, 107, 141, 162
Bst4CI	ACNGT	3 cut(s)	247, 319, 336
BstAFI	CTTAAG	2 cut(s)	85, 623
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	37
BstEII	GGTNACC	1 cut(s)	603
BstENI	CCTNNNNNAGG	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	288
BstKTI	GATC	8 cut(s)	60, 178, 236, 538, 561, 577, 616, 632
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	8 cut(s)	57, 175, 233, 535, 558, 574, 613, 629
BstNI	CCWGG	4 cut(s)	7, 107, 141, 162
BstPI	GGTNACC	1 cut(s)	603
BstSCI	CCNGG	4 cut(s)	5, 105, 139, 160
BstV1I	GCAGC	1 cut(s)	508
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
Bsu15I	ATCGAT	1 cut(s)	616
BsuI	GTATCC	1 cut(s)	386
BsuTUI	ATCGAT	1 cut(s)	616
BtsCI	GGATG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	341
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	437
ClaI	ATCGAT	1 cut(s)	616
Csp6I	GTAC	1 cut(s)	203
CspAI	ACCGGT	1 cut(s)	52
CviAII	CATG	3 cut(s)	122, 197, 530
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	8 cut(s)	59, 177, 235, 537, 560, 576, 615, 631
DpnII	GATC	8 cut(s)	57, 175, 233, 535, 558, 574, 613, 629
EciI	GGCGGA	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	437
Eco91I	GGTNACC	1 cut(s)	603
EcoNI	CCTNNNNNAGG	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	603
EcoRII	CCWGG	4 cut(s)	5, 105, 139, 160
EcoT14I	CCWWGG	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	3 cut(s)	125, 200, 533
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FatI	CATG	3 cut(s)	121, 196, 529
Fnu4HI	GCNGC	1 cut(s)	522
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	522
FspBI	CTAG	2 cut(s)	425, 455
GluI	GCNGC	1 cut(s)	522
GsuI	CTGGAG	2 cut(s)	227, 588
HapII	CCGG	1 cut(s)	53
Hin1II	CATG	3 cut(s)	125, 200, 533
HinfI	GANTC	2 cut(s)	408, 458
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	3 cut(s)	67, 523, 597
Hpy166II	GTNNAC	2 cut(s)	203, 332
Hpy188I	TCNGA	3 cut(s)	238, 463, 563
Hpy188III	TCNNGA	2 cut(s)	412, 425
Hpy8I	GTNNAC	2 cut(s)	203, 332
HpyAV	CCTTC	4 cut(s)	431, 502, 594, 679
HpyCH4III	ACNGT	3 cut(s)	247, 319, 336
HpyCH4V	TGCA	6 cut(s)	259, 297, 339, 541, 673, 691
HpyF3I	CTNAG	1 cut(s)	37
Hsp92II	CATG	3 cut(s)	125, 200, 533
Kzo9I	GATC	8 cut(s)	57, 175, 233, 535, 558, 574, 613, 629
LmnI	GCTCC	1 cut(s)	569
Lsp1109I	GCAGC	1 cut(s)	508
LweI	GCATC	2 cut(s)	19, 550
MaeI	CTAG	2 cut(s)	425, 455
MaeIII	GTNAC	1 cut(s)	603
MalI	GATC	8 cut(s)	59, 177, 235, 537, 560, 576, 615, 631
MboI	GATC	8 cut(s)	57, 175, 233, 535, 558, 574, 613, 629
MboII	GAAGA	2 cut(s)	239, 251
MflI	RGATCY	1 cut(s)	535
MluCI	AATT	3 cut(s)	68, 128, 180
MnlI	CCTC	6 cut(s)	67, 118, 202, 205, 421, 450
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	4 cut(s)	86, 114, 624, 694
MspCI	CTTAAG	2 cut(s)	85, 623
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	4 cut(s)	7, 107, 141, 162
MvaI	CCWGG	4 cut(s)	7, 107, 141, 162
NdeII	GATC	8 cut(s)	57, 175, 233, 535, 558, 574, 613, 629
NlaIII	CATG	3 cut(s)	125, 200, 533
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	408, 458
PinAI	ACCGGT	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	523
PpuMI	RGGWCCY	1 cut(s)	437
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	4 cut(s)	5, 105, 139, 160
PspEI	GGTNACC	1 cut(s)	603
PspGI	CCWGG	4 cut(s)	5, 105, 139, 160
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	437
PspPPI	RGGWCCY	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SaqAI	TTAA	4 cut(s)	86, 114, 624, 694
SatI	GCNGC	1 cut(s)	522
Sau3AI	GATC	8 cut(s)	57, 175, 233, 535, 558, 574, 613, 629
Sau96I	GGNCC	1 cut(s)	437
ScrFI	CCNGG	4 cut(s)	7, 107, 141, 162
SfaNI	GCATC	2 cut(s)	19, 550
SinI	GGWCC	1 cut(s)	437
SmlI	CTYRAG	2 cut(s)	85, 623
SmoI	CTYRAG	2 cut(s)	85, 623
Sse9I	AATT	3 cut(s)	68, 128, 180
SsiI	CCGC	1 cut(s)	403
SspMI	CTAG	2 cut(s)	425, 455
StyD4I	CCNGG	4 cut(s)	5, 105, 139, 160
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	3 cut(s)	247, 319, 336
TaqI	TCGA	2 cut(s)	616, 632
TasI	AATT	3 cut(s)	68, 128, 180
TatI	WGTACW	1 cut(s)	202
TfiI	GAWTC	2 cut(s)	408, 458
Tru1I	TTAA	4 cut(s)	86, 114, 624, 694
Tru9I	TTAA	4 cut(s)	86, 114, 624, 694
TseFI	GTSAC	1 cut(s)	603
TseI	GCWGC	1 cut(s)	521
Tsp45I	GTSAC	1 cut(s)	603
TspDTI	ATGAA	1 cut(s)	59
Vha464I	CTTAAG	2 cut(s)	85, 623
VpaK11BI	GGWCC	1 cut(s)	437
XagI	CCTNNNNNAGG	1 cut(s)	425
XapI	RAATTY	2 cut(s)	128, 180
XbaI	TCTAGA	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	2 cut(s)	425, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.