MD03G1015100.v1.1

Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
1208384 .. 1209896
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1015100.v1.1.491

Sequence Viewer

Length: 1164 bp
ATGGGAGCTGGGGGGAACATGGTCACCAAAACCAAGTCTAAAAAGCAAGAAGCCACCCACCAAAAAAGGGTGCCAGTCTCAAAACCTCCATTCACTCTAAGCCAAATCAAGAAAGCTATCCCTCCCCATTGCTTCAACCGCTCTCTCCTCCGCTCCTTCTCCTATCTCCTCTACGACCTCGCCTTATCCTTCCTCTTCTACCACATCGCCACCTCATACTTCCACCTCCTCCCTCACCCCCTCCTCTCCTACATCTCCTGGCCTCTCTATTGGATCCTCCAAGGCTGCACCCTCACCGGCGTGTGGGTTATCGCACACGAGTGCGGCCACCATGCCTTCAGTGACTACCAAGTAGTTGATGACACTGTCGGCCTTGTCCTCCACTCATTTCTCCTAACCCCTTACTTCTCCTGGAAATACAGCCACCGCCGCCACCACTCCAACACGGCGTCCCTCGAACGGGATGAAGTATTTGTTCCAAAACCTAAATCCAAAATTCCGTTTTACAACAAGTACTTCAACAACCCTCCAGGCAGGATCTTGAGTATTTTGGTAACACTCACACTCGGTTGGCCTTTGTACTTGGCGTTCAACGCCTCTGGCAGGGACTACGACCGGTTTGCGTGCCACTACGATCCCAAAGGTCCAATATTTTCGACCCGTGAAAGGCTTCAAATTTACATTTCTGATCTTGGGATTGTGGCCGTAACTTATGTGCTCTACCGCATTGCAATGGCCAAAGGGTTCGTTTGGCTTACTTGTATTTATGGAGTCCCATTGCTTGTAGTTAACGGGTTTCTTGTGTTGATCACGTACTTGCATCACACACACTCCTCGCTGCCGCACTTCGACGCGTCGGAATGGGACTGGTTGCGAGGGGCTTTGTCGACGGTGGACAGAGATTTTGGGGTGCTTAATAAGGTTTTCCACAATATAACAGATTCGCATGTGGTTCACCATCTTTTCTCTACAATGCCACATTACCATGCAGTGGAGGCAACAGAAGCAGTGAAGCCTGTCTTGGGAGAGTACTATAGTTTCGATGGGACTCCGGTTTACAAGGCCTTGTGGAGGGAGGCTAAAGAGTGCCTTTATGTTGAGCTGGATGATGAGGATAATGGTGGTGCTAAAAAAGGTGTTTTTTGGTACAAGAACAAGTTTTAA

Protein Analysis

388

Amino Acids

44.56

Weight (kDa)

8.89

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3474 PF11960 14 - 64 1.2e-07 Domain of unknown function (DUF3474)
FA_desaturase PF00487 86 - 345 3.7e-29 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 70
AccB7I CCANNNNNTGG 1 cut(s) 991
AccBSI CCGCTC 2 cut(s) 141, 153
AccI GTMKAC 1 cut(s) 887
AccII CGCG 1 cut(s) 854
AciI CCGC 7 cut(s) 139, 151, 324, 427, 430, 724, 842
AclWI GGATC 4 cut(s) 268, 281, 545, 629
AcoI YGGCCR 3 cut(s) 325, 702, 735
AcsI RAATTY 2 cut(s) 495, 675
AcuI CTGAAG 1 cut(s) 322
AcyI GRCGYC 1 cut(s) 449
AfaI GTAC 5 cut(s) 515, 581, 815, 1031, 1148
AfiI CCNNNNNNNGG 9 cut(s) 67, 303, 459, 460, 603, 666, 991, 1022, 1071
AflIII ACRYGT 1 cut(s) 852
AgeI ACCGGT 1 cut(s) 615
AgsI TTSAA 4 cut(s) 136, 520, 592, 674
AjnI CCWGG 3 cut(s) 257, 410, 529
AjuI GAANNNNNNNTTGG 2 cut(s) 1004, 1036
AleI CACNNNNGTG 2 cut(s) 299, 319
AluBI AGCT 3 cut(s) 8, 116, 1102
AluI AGCT 3 cut(s) 8, 116, 1102
Alw21I GWGCWC 1 cut(s) 720
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 4 cut(s) 268, 281, 545, 629
AoxI GGCC 7 cut(s) 260, 325, 370, 572, 702, 735, 1062
ApeKI GCWGC 2 cut(s) 285, 838
ApoI RAATTY 2 cut(s) 495, 675
ArsI GACNNNNNNTTYG 2 cut(s) 887, 919
AsiGI ACCGGT 1 cut(s) 615
Asp700I GAANNNNTTC 1 cut(s) 669
AspS9I GGNCC 1 cut(s) 644
AsuHPI GGTGA 4 cut(s) 16, 227, 286, 947
AvaII GGWCC 1 cut(s) 644
BalI TGGCCA 1 cut(s) 737
BamHI GGATCC 1 cut(s) 273
BanI GGYRCC 1 cut(s) 70
BauI CACGAG 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 720
BbvI GCAGC 2 cut(s) 272, 825
BccI CCATC 2 cut(s) 966, 1037
BceAI ACGGC 2 cut(s) 462, 689
BcgI CGANNNNNNTGC 2 cut(s) 602, 636
BciT130I CCWGG 3 cut(s) 259, 412, 531
BclI TGATCA 1 cut(s) 807
BcoDI GTCTC 1 cut(s) 82
BfmI CTRYAG 1 cut(s) 1033
BisI GCNGC 5 cut(s) 286, 325, 430, 839, 842
BlsI GCNGC 5 cut(s) 287, 326, 431, 840, 843
BmcAI AGTACT 2 cut(s) 515, 1031
Bme1390I CCNGG 3 cut(s) 259, 412, 531
Bme18I GGWCC 1 cut(s) 644
BmgT120I GGNCC 1 cut(s) 644
BmiI GGNNCC 2 cut(s) 72, 275
BmrFI CCNGG 3 cut(s) 259, 412, 531
BmsI GCATC 1 cut(s) 829
BpmI CTGGAG 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 562
BsaAI YACGTR 1 cut(s) 813
BsaHI GRCGYC 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 280
BsaWI WCCGGW 2 cut(s) 615, 1051
BsaXI ACNNNNNCTCC 2 cut(s) 815, 845
Bsc4I CCNNNNNNNGG 9 cut(s) 67, 303, 459, 460, 603, 666, 991, 1022, 1071
Bse118I RCCGGY 2 cut(s) 296, 615
Bse1I ACTGG 2 cut(s) 74, 872
Bse3DI GCAATG 4 cut(s) 127, 726, 738, 776
BseBI CCWGG 3 cut(s) 259, 412, 531
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 2 cut(s) 469, 1111
BseLI CCNNNNNNNGG 9 cut(s) 67, 303, 459, 460, 603, 666, 991, 1022, 1071
BseMI GCAATG 4 cut(s) 127, 726, 738, 776
BseNI ACTGG 2 cut(s) 74, 872
BseRI GAGGAG 5 cut(s) 137, 158, 218, 233, 823
BseXI GCAGC 2 cut(s) 272, 825
BseYI CCCAGC 1 cut(s) 8
BsgI GTGCAG 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 854
Bsh1285I CGRYCG 1 cut(s) 616
BshFI GGCC 7 cut(s) 262, 327, 372, 574, 704, 737, 1064
BshNI GGYRCC 1 cut(s) 70
BshTI ACCGGT 1 cut(s) 615
BsiEI CGRYCG 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 720
BsiSI CCGG 3 cut(s) 297, 616, 1052
BslFI GGGAC 5 cut(s) 436, 620, 758, 878, 1060
BslI CCNNNNNNNGG 9 cut(s) 67, 303, 459, 460, 603, 666, 991, 1022, 1071
BsmAI GTCTC 1 cut(s) 82
BsmFI GGGAC 5 cut(s) 436, 620, 758, 878, 1060
BsnI GGCC 7 cut(s) 262, 327, 372, 574, 704, 737, 1064
Bsp1286I GDGCHC 1 cut(s) 720
Bsp143I GATC 5 cut(s) 273, 537, 634, 688, 807
BspACI CCGC 7 cut(s) 139, 151, 324, 427, 430, 724, 842
BspANI GGCC 7 cut(s) 262, 327, 372, 574, 704, 737, 1064
BspFNI CGCG 1 cut(s) 854
BspLI GGNNCC 2 cut(s) 72, 275
BspPI GGATC 4 cut(s) 268, 281, 545, 629
BspT107I GGYRCC 1 cut(s) 70
BsrBI CCGCTC 2 cut(s) 141, 153
BsrDI GCAATG 4 cut(s) 127, 726, 738, 776
BsrFI RCCGGY 2 cut(s) 296, 615
BsrI ACTGG 2 cut(s) 74, 872
BssAI RCCGGY 2 cut(s) 296, 615
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 5 cut(s) 273, 537, 634, 688, 807
BssNI GRCGYC 1 cut(s) 449
BssSI CACGAG 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 280
Bst2BI CACGAG 1 cut(s) 317
Bst2UI CCWGG 3 cut(s) 259, 412, 531
Bst4CI ACNGT 2 cut(s) 367, 892
Bst6I CTCTTC 1 cut(s) 200
BstACI GRCGYC 1 cut(s) 449
BstBAI YACGTR 1 cut(s) 813
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 1 cut(s) 98
BstEII GGTNACC 1 cut(s) 22
BstENI CCTNNNNNAGG 2 cut(s) 601, 1069
BstF5I GGATG 2 cut(s) 469, 1111
BstFNI CGCG 1 cut(s) 854
BstKTI GATC 5 cut(s) 276, 540, 637, 691, 810
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 5 cut(s) 273, 537, 634, 688, 807
BstMCI CGRYCG 1 cut(s) 616
BstMWI GCNNNNNNNGC 5 cut(s) 138, 429, 593, 995, 1004
BstNI CCWGG 3 cut(s) 259, 412, 531
BstNSI RCATGY 1 cut(s) 950
BstPI GGTNACC 1 cut(s) 22
BstSCI CCNGG 3 cut(s) 257, 410, 529
BstSFI CTRYAG 1 cut(s) 1033
BstUI CGCG 1 cut(s) 854
BstV1I GCAGC 2 cut(s) 272, 825
BstX2I RGATCY 2 cut(s) 273, 537
BstYI RGATCY 2 cut(s) 273, 537
BsuRI GGCC 7 cut(s) 262, 327, 372, 574, 704, 737, 1064
BtgZI GCGATG 1 cut(s) 190
BtsCI GGATG 2 cut(s) 469, 1111
BtsI GCAGTG 2 cut(s) 996, 1014
BtsIMutI CAGTG 4 cut(s) 346, 363, 996, 1014
Cac8I GCNNGC 1 cut(s) 625
Cfr10I RCCGGY 2 cut(s) 296, 615
Cfr13I GGNCC 1 cut(s) 644
CseI GACGC 3 cut(s) 438, 843, 860
Csp6I GTAC 5 cut(s) 514, 580, 814, 1030, 1147
CspAI ACCGGT 1 cut(s) 615
CviAII CATG 4 cut(s) 19, 332, 947, 986
CviQI GTAC 5 cut(s) 514, 580, 814, 1030, 1147
DdeI CTNAG 1 cut(s) 98
DpnI GATC 5 cut(s) 275, 539, 636, 690, 809
DpnII GATC 5 cut(s) 273, 537, 634, 688, 807
EaeI YGGCCR 3 cut(s) 325, 702, 735
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 280
Eco147I AGGCCT 1 cut(s) 1064
Eco47I GGWCC 1 cut(s) 644
Eco57I CTGAAG 1 cut(s) 322
Eco91I GGTNACC 1 cut(s) 22
EcoNI CCTNNNNNAGG 2 cut(s) 601, 1069
EcoO65I GGTNACC 1 cut(s) 22
EcoRII CCWGG 3 cut(s) 257, 410, 529
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 4 cut(s) 22, 335, 950, 989
FalI AAGNNNNNCTT 4 cut(s) 1004, 1036, 1074, 1106
FaqI GGGAC 5 cut(s) 436, 620, 758, 878, 1060
FatI CATG 4 cut(s) 18, 331, 946, 985
FbaI TGATCA 1 cut(s) 807
FblI GTMKAC 1 cut(s) 887
Fnu4HI GCNGC 5 cut(s) 286, 325, 430, 839, 842
FokI GGATG 2 cut(s) 476, 1118
Fsp4HI GCNGC 5 cut(s) 286, 325, 430, 839, 842
GluI GCNGC 5 cut(s) 286, 325, 430, 839, 842
GsaI CCCAGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 7 cut(s) 262, 327, 372, 574, 704, 737, 1064
HapII CCGG 3 cut(s) 297, 616, 1052
HgaI GACGC 3 cut(s) 438, 843, 860
Hin1I GRCGYC 1 cut(s) 449
Hin1II CATG 4 cut(s) 22, 335, 950, 989
HincII GTYRAC 2 cut(s) 790, 888
HindII GTYRAC 2 cut(s) 790, 888
HinfI GANTC 3 cut(s) 771, 941, 1048
HpaI GTTAAC 1 cut(s) 790
HpaII CCGG 3 cut(s) 297, 616, 1052
HphI GGTGA 4 cut(s) 16, 227, 286, 947
Hpy166II GTNNAC 5 cut(s) 790, 888, 895, 955, 1057
Hpy188I TCNGA 2 cut(s) 688, 859
Hpy188III TCNNGA 2 cut(s) 109, 541
Hpy8I GTNNAC 5 cut(s) 790, 888, 895, 955, 1057
Hpy99I CGWCG 3 cut(s) 854, 859, 892
HpyAV CCTTC 3 cut(s) 166, 199, 346
HpyCH4III ACNGT 2 cut(s) 367, 892
HpyCH4IV ACGT 1 cut(s) 812
HpyCH4V TGCA 4 cut(s) 288, 731, 820, 989
HpyF10VI GCNNNNNNNGC 5 cut(s) 138, 429, 593, 995, 1004
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 1 cut(s) 812
Hsp92I GRCGYC 1 cut(s) 449
Hsp92II CATG 4 cut(s) 22, 335, 950, 989
Ksp22I TGATCA 1 cut(s) 807
KspAI GTTAAC 1 cut(s) 790
Kzo9I GATC 5 cut(s) 273, 537, 634, 688, 807
LmnI GCTCC 2 cut(s) 5, 158
Lsp1109I GCAGC 2 cut(s) 272, 825
LweI GCATC 1 cut(s) 829
MaeII ACGT 1 cut(s) 812
MaeIII GTNAC 4 cut(s) 22, 341, 553, 706
MalI GATC 5 cut(s) 275, 539, 636, 690, 809
MbiI CCGCTC 2 cut(s) 141, 153
MboI GATC 5 cut(s) 273, 537, 634, 688, 807
MboII GAAGA 1 cut(s) 187
MflI RGATCY 2 cut(s) 273, 537
MhlI GDGCHC 1 cut(s) 720
MlsI TGGCCA 1 cut(s) 737
MluCI AATT 2 cut(s) 495, 675
MluI ACGCGT 1 cut(s) 852
MluNI TGGCCA 1 cut(s) 737
MlyI GAGTC 2 cut(s) 780, 1042
MmeI TCCRAC 2 cut(s) 465, 837
Mox20I TGGCCA 1 cut(s) 737
MroXI GAANNNNTTC 1 cut(s) 669
MscI TGGCCA 1 cut(s) 737
MseI TTAA 3 cut(s) 789, 915, 1162
MslI CAYNNNNRTG 4 cut(s) 299, 319, 731, 984
Msp20I TGGCCA 1 cut(s) 737
MspI CCGG 3 cut(s) 297, 616, 1052
MspR9I CCNGG 3 cut(s) 259, 412, 531
MvaI CCWGG 3 cut(s) 259, 412, 531
MvnI CGCG 1 cut(s) 854
MwoI GCNNNNNNNGC 5 cut(s) 138, 429, 593, 995, 1004
NdeII GATC 5 cut(s) 273, 537, 634, 688, 807
NlaIII CATG 4 cut(s) 22, 335, 950, 989
NlaIV GGNNCC 2 cut(s) 72, 275
NmuCI GTSAC 2 cut(s) 22, 341
NspI RCATGY 1 cut(s) 950
OliI CACNNNNGTG 2 cut(s) 299, 319
PceI AGGCCT 1 cut(s) 1064
PdmI GAANNNNTTC 1 cut(s) 669
PfeI GAWTC 1 cut(s) 941
PflFI GACNNNGTC 1 cut(s) 365
PflMI CCANNNNNTGG 1 cut(s) 991
PfoI TCCNGGA 1 cut(s) 410
PinAI ACCGGT 1 cut(s) 615
PkrI GCNGC 5 cut(s) 287, 326, 431, 840, 843
PleI GAGTC 2 cut(s) 779, 1042
PpsI GAGTC 2 cut(s) 779, 1042
Ppu21I YACGTR 1 cut(s) 813
Psp6I CCWGG 3 cut(s) 257, 410, 529
PspEI GGTNACC 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 3 cut(s) 257, 410, 529
PspN4I GGNNCC 2 cut(s) 72, 275
PspPI GGNCC 1 cut(s) 644
PsrI GAACNNNNNNTAC 2 cut(s) 572, 604
PsuI RGATCY 2 cut(s) 273, 537
PsyI GACNNNGTC 1 cut(s) 365
RsaI GTAC 5 cut(s) 515, 581, 815, 1031, 1148
RsaNI GTAC 5 cut(s) 514, 580, 814, 1030, 1147
RseI CAYNNNNRTG 4 cut(s) 299, 319, 731, 984
SalI GTCGAC 1 cut(s) 886
SaqAI TTAA 3 cut(s) 789, 915, 1162
SatI GCNGC 5 cut(s) 286, 325, 430, 839, 842
Sau3AI GATC 5 cut(s) 273, 537, 634, 688, 807
Sau96I GGNCC 1 cut(s) 644
ScaI AGTACT 2 cut(s) 515, 1031
SchI GAGTC 2 cut(s) 780, 1042
ScrFI CCNGG 3 cut(s) 259, 412, 531
SduI GDGCHC 1 cut(s) 720
SfaNI GCATC 1 cut(s) 829
SfcI CTRYAG 1 cut(s) 1033
SgrAI CRCCGGYG 1 cut(s) 296
SinI GGWCC 1 cut(s) 644
SmiMI CAYNNNNRTG 4 cut(s) 299, 319, 731, 984
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
Sse9I AATT 2 cut(s) 495, 675
SseBI AGGCCT 1 cut(s) 1064
SsiI CCGC 7 cut(s) 139, 151, 324, 427, 430, 724, 842
SspI AATATT 1 cut(s) 651
StuI AGGCCT 1 cut(s) 1064
StyD4I CCNGG 3 cut(s) 257, 410, 529
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 2 cut(s) 367, 892
TaiI ACGT 1 cut(s) 815
TaqI TCGA 5 cut(s) 456, 656, 849, 887, 1041
TasI AATT 2 cut(s) 495, 675
TatI WGTACW 3 cut(s) 513, 579, 1029
TauI GCSGC 3 cut(s) 327, 432, 844
TfiI GAWTC 1 cut(s) 941
Tru1I TTAA 3 cut(s) 789, 915, 1162
Tru9I TTAA 3 cut(s) 789, 915, 1162
TscAI CASTG 4 cut(s) 346, 370, 996, 1014
TseFI GTSAC 2 cut(s) 22, 341
TseI GCWGC 2 cut(s) 285, 838
Tsp45I GTSAC 2 cut(s) 22, 341
TspDTI ATGAA 1 cut(s) 480
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 4 cut(s) 346, 370, 996, 1014
Tth111I GACNNNGTC 1 cut(s) 365
Van91I CCANNNNNTGG 1 cut(s) 991
VpaK11BI GGWCC 1 cut(s) 644
XagI CCTNNNNNAGG 2 cut(s) 601, 1069
XapI RAATTY 2 cut(s) 495, 675
XceI RCATGY 1 cut(s) 950
XmiI GTMKAC 1 cut(s) 887
XmnI GAANNNNTTC 1 cut(s) 669
ZrmI AGTACT 2 cut(s) 515, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.