Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002963

Physical Location & Seq

Genomic Coordinates Reverse (-)

15155656 .. 15155973

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0178200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGAACTACAAGCCCAGCAACCCACCGAGGAGGAAGGAAGCAACCAAGCAGCCGGGAGTAGTGCCAACACGCCTATCAGGCCAGCCAATAACCGGTGGACTCCCACACCAGCTCAACTAAGAATCCTTCAGGGGCTCTACTATGACAAGGGAGTTAAGTACCTAACTATAGAGCAGATTCAGGAGATTTGTCTCCATCTGAAACAGTATGGGCAGATTGAGGACAAGAACGTCTTTTTTTTGGTTTTAGAACCTCAAGGCTCGAGAGAAGCAGAAGAAGAGGTTAAATCAGGGCGTTCAGGTGCCCAAGGTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045485 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 map01040 map01212

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

105

Amino Acids

11.73

Weight (kDa)

4.96

Isoelectric Point (pI)

73.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12120 AT3G12120
fragaria_vesca	FvH4_3g44270 FvH4_6g22400
malus_domestica	MD03G1015100.v1.1 MD12G1057600.v1.1 MD14G1058300.v1.1
prunus_persica	Prupe.7G076500_v2.0.a1 Prupe.7G076500_v2.0.a1
pyrus_communis	pycom03g01260 pycom12g05120 pycom14g04710
rosa_chinensis	RchiOBHm_Chr3g0479761 RchiOBHm_Chr5g0080581
rosa_laevigata	RLG00000023544 RLG00000036873
rosa_multiflora	Rmu_sc0002380.1_g000002 Rmu_sc0003755.1_g000012
rosa_roxburghii	Rroxscaffold_1G00002780 Rroxscaffold_6G00402030
rosa_rugosa	Rorug03G0178000 Rorug03G0178000 Rorug03G0178000 Rorug03G0178100 Rorug03G0178200 Rorug05G0470600
rosa_samantha	Rh3AG228900 Rh3BG262000 Rh3CG258900 Rh3DG255000 Rh5AG524000 Rh5BG546200 Rh5CG569400 Rh5DG556400
rosa_wichuraiana	Rw0G015310 Rw3G020450 Rw3G020630 Rw5G048610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	113
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgeI	ACCGGT	1 cut(s)	93
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
Alw26I	GTCTC	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	262
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	50
AsiGI	ACCGGT	1 cut(s)	93
AsuC2I	CCSGG	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	316
BfmI	CTRYAG	1 cut(s)	168
BglI	GCCNNNNNGGC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	27, 307
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse118I	RCCGGY	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	27, 307
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	82
BshNI	GGYRCC	1 cut(s)	302
BshTI	ACCGGT	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	262
BsiSI	CCGG	2 cut(s)	54, 94
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	138, 307
BspANI	GGCC	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	304
BspT107I	GGYRCC	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	27, 307
BssT1I	CCWWGG	1 cut(s)	307
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	119
BstMAI	GTCTC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	160
CspAI	ACCGGT	1 cut(s)	93
CviJI	RGCY	7 cut(s)	14, 53, 82, 86, 113, 136, 261
CviKI_1	RGCY	7 cut(s)	14, 53, 82, 86, 113, 136, 261
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	119
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	307
FaiI	YATR	3 cut(s)	144, 170, 210
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
Fnu4HI	GCNGC	1 cut(s)	51
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	316
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	2 cut(s)	54, 94
HinfI	GANTC	3 cut(s)	100, 123, 178
HpaII	CCGG	2 cut(s)	54, 94
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	2 cut(s)	182, 264
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	29, 137
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	1 cut(s)	119
HpySE526I	ACGT	1 cut(s)	231
Lsp1109I	GCAGC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	316
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	311
MboII	GAAGA	2 cut(s)	287, 290
MhlI	GDGCHC	2 cut(s)	138, 307
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	5 cut(s)	22, 25, 214, 264, 274
MseI	TTAA	2 cut(s)	156, 285
MspI	CCGG	2 cut(s)	54, 94
MspR9I	CCNGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	79
NciI	CCSGG	1 cut(s)	55
NlaIV	GGNNCC	1 cut(s)	304
PaeR7I	CTCGAG	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	123, 178
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	304
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	156, 285
SatI	GCNGC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	138, 307
SetI	ASST	7 cut(s)	115, 165, 234, 256, 285, 304, 313
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	262
SlaI	CTCGAG	1 cut(s)	262
SmlI	CTYRAG	2 cut(s)	255, 262
SmoI	CTYRAG	2 cut(s)	255, 262
SspMI	CTAG	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	263
TfiI	GAWTC	2 cut(s)	123, 178
Tru1I	TTAA	2 cut(s)	156, 285
Tru9I	TTAA	2 cut(s)	156, 285
TseI	GCWGC	1 cut(s)	50
XhoI	CTCGAG	1 cut(s)	262
XspI	CTAG	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.