Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002963

Physical Location & Seq

Genomic Coordinates Forward (+)

11317929 .. 11322425

Gene Structure 4497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G076500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGTGCCGGTGGAAGAATGTCCGCACCCCCTACCCGTAAGAACGCTGAAACCGACAACCCCAAGCGAGTGCCATACTCAAAACCTCCATTCAGTCTCGGCCAGATCAAGAAAGCCATCCCACCTCATTGCTTTCAGCGCTCTGTTATCCGCTCCTTCTCCTATGTCTTTTATGACCTTACCATTGCCTTTCTCCTGTACTACATTGCTTGCAATTACATCCAGCCTCTCTCTCAACCTTTCTCTTTCTTGGCGTGGCCAGTTTACTGGTATGTTCAGGGCTGTGTCCTGACTGGTGTTTGGGTGATAGCGCATGAGTGTGGTCACCATGCTTTTAGTGATTATCAATGGCTGGATGACACAGTCGGTCTAATCCTCCACTCTGCCCTCCTTGTGCCTTACTTTTCTTGGAAGTATAGCCATCGCCGTCACCACTCTAACACAGGTTCCATTGAGCGAGATGAGGTCTTTGTCCCCAAGCAGAAGTCTGCTATTGGATGGTACTCCAAATATCTAAACAACCCACCGGGCAGGTTCCTTACACTCACCATCCAACTCACTCTAGGCTGGCCTCTGTATCTGGCTTTCAATGTTTCAGGGAGGCACTATGAAGGCTTTGCTTGCCACTACCATCCATATGGCCCCATCTTCTCCGATCGTGAACGATTGCAGATTTTCCTTTCTGATGCCGGTGTTCTTGCAGTCGTATATGGGCTATACCGTCTAGCTGTGGCGAAAGGGCTTGCTTGGGTTGTATGCTATTATGGAGGACCTTTGATGGTGGTGAATGGATTTTTGGTGCTGATCACATACTTGCAGCACACACACCCTTCATTGCCACACTACGATTCCTCAGAATGGGACTGGTTGAGAGGAGCTTTGGCAACAGTTGACAGAGATTACGGCATCCTGAACAAGGTTTTCCATAACATCACAGACACTCATGTTGCTCACCATTTGTTCTCAACCATGCCACATTACCATGCAATGGAGGCCACCAAAGCTATCAAGCCGATTTTGGGCGATTACTATCAGTTGGACAGGACGCCGGTTTTCAAGGCAATGTTCAGGGAGGCAAAGGAGTGTATTTATGTTGAGCGAGATGAGGGTGACAAGAAAGGTGTCTTCTGGTACAATAATAAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045485 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 map01040 map01212

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

383

Amino Acids

44.04

Weight (kDa)

8.85

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12120 AT3G12120
fragaria_vesca	FvH4_3g44270 FvH4_6g22400
malus_domestica	MD03G1015100.v1.1 MD12G1057600.v1.1 MD14G1058300.v1.1
prunus_persica	Prupe.7G076500_v2.0.a1 Prupe.7G076500_v2.0.a1
pyrus_communis	pycom03g01260 pycom12g05120 pycom14g04710
rosa_chinensis	RchiOBHm_Chr3g0479761 RchiOBHm_Chr5g0080581
rosa_laevigata	RLG00000023544 RLG00000036873
rosa_multiflora	Rmu_sc0002380.1_g000002 Rmu_sc0003755.1_g000012
rosa_roxburghii	Rroxscaffold_1G00002780 Rroxscaffold_6G00402030
rosa_rugosa	Rorug03G0178000 Rorug03G0178000 Rorug03G0178000 Rorug03G0178100 Rorug03G0178200 Rorug05G0470600
rosa_samantha	Rh3AG228900 Rh3BG262000 Rh3CG258900 Rh3DG255000 Rh5AG524000 Rh5BG546200 Rh5CG569400 Rh5DG556400
rosa_wichuraiana	Rw0G015310 Rw3G020450 Rw3G020630 Rw5G048610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1147
Acc36I	ACCTGC	1 cut(s)	522
AccB1I	GGYRCC	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	988
AccBSI	CCGCTC	1 cut(s)	153
AciI	CCGC	2 cut(s)	24, 151
AcoI	YGGCCR	2 cut(s)	100, 257
AcyI	GRCGYC	1 cut(s)	1046
AfaI	GTAC	3 cut(s)	200, 503, 1133
AfeI	AGCGCT	1 cut(s)	140
AfiI	CCNNNNNNNGG	4 cut(s)	858, 916, 988, 1019
AgsI	TTSAA	2 cut(s)	589, 1057
AjuI	GAANNNNNNNTTGG	2 cut(s)	779, 811
AluBI	AGCT	3 cut(s)	728, 878, 1004
AluI	AGCT	3 cut(s)	728, 878, 1004
Alw26I	GTCTC	1 cut(s)	101
Aor51HI	AGCGCT	1 cut(s)	140
AoxI	GGCC	5 cut(s)	100, 257, 569, 640, 993
ApeKI	GCWGC	1 cut(s)	817
AspLEI	GCGC	2 cut(s)	141, 313
AspS9I	GGNCC	2 cut(s)	641, 770
AsuC2I	CCSGG	1 cut(s)	528
AsuHPI	GGTGA	7 cut(s)	316, 317, 422, 538, 796, 944, 1121
AvaII	GGWCC	1 cut(s)	770
BalI	TGGCCA	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	1117
BbvI	GCAGC	1 cut(s)	829
BccI	CCATC	7 cut(s)	125, 429, 492, 557, 639, 653, 772
BceAI	ACGGC	2 cut(s)	411, 919
BclI	TGATCA	1 cut(s)	804
BcnI	CCSGG	1 cut(s)	528
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	2 cut(s)	563, 725
BfoI	RGCGCY	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	522
BisI	GCNGC	1 cut(s)	818
BlsI	GCNGC	1 cut(s)	819
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	770
BmgT120I	GGNCC	2 cut(s)	641, 770
BmiI	GGNNCC	4 cut(s)	7, 448, 536, 643
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	2 cut(s)	676, 915
BpiI	GAAGAC	1 cut(s)	1117
BpuMI	CCSGG	1 cut(s)	528
BsaBI	GATNNNNATC	1 cut(s)	1029
BsaHI	GRCGYC	1 cut(s)	1046
Bsc4I	CCNNNNNNNGG	4 cut(s)	858, 916, 988, 1019
Bse118I	RCCGGY	3 cut(s)	8, 689, 1048
Bse1I	ACTGG	4 cut(s)	260, 272, 298, 869
Bse3DI	GCAATG	6 cut(s)	127, 183, 204, 833, 993, 1068
Bse8I	GATNNNNATC	1 cut(s)	1029
BseGI	GGATG	7 cut(s)	117, 219, 361, 503, 549, 631, 906
BseJI	GATNNNNATC	1 cut(s)	1029
BseLI	CCNNNNNNNGG	4 cut(s)	858, 916, 988, 1019
BseMI	GCAATG	6 cut(s)	127, 183, 204, 833, 993, 1068
BseMII	CTCAG	1 cut(s)	867
BseNI	ACTGG	4 cut(s)	260, 272, 298, 869
BseRI	GAGGAG	1 cut(s)	888
BseXI	GCAGC	1 cut(s)	829
Bsh1285I	CGRYCG	1 cut(s)	658
BshFI	GGCC	5 cut(s)	102, 259, 571, 642, 995
BshNI	GGYRCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	658
BsiSI	CCGG	4 cut(s)	9, 527, 690, 1049
BslFI	GGGAC	2 cut(s)	458, 875
BslI	CCNNNNNNNGG	4 cut(s)	858, 916, 988, 1019
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	2 cut(s)	458, 875
BsnI	GGCC	5 cut(s)	102, 259, 571, 642, 995
Bsp143I	GATC	3 cut(s)	105, 655, 804
BspACI	CCGC	2 cut(s)	24, 151
BspANI	GGCC	5 cut(s)	102, 259, 571, 642, 995
BspCNI	CTCAG	1 cut(s)	866
BspLI	GGNNCC	4 cut(s)	7, 448, 536, 643
BspMI	ACCTGC	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	5
BsrBI	CCGCTC	1 cut(s)	153
BsrDI	GCAATG	6 cut(s)	127, 183, 204, 833, 993, 1068
BsrFI	RCCGGY	3 cut(s)	8, 689, 1048
BsrI	ACTGG	4 cut(s)	260, 272, 298, 869
BssAI	RCCGGY	3 cut(s)	8, 689, 1048
BssMI	GATC	3 cut(s)	105, 655, 804
BssNI	GRCGYC	1 cut(s)	1046
Bst4CI	ACNGT	3 cut(s)	364, 722, 889
BstACI	GRCGYC	1 cut(s)	1046
BstC8I	GCNNGC	4 cut(s)	211, 569, 622, 744
BstDEI	CTNAG	1 cut(s)	853
BstEII	GGTNACC	1 cut(s)	323
BstENI	CCTNNNNNAGG	1 cut(s)	914
BstF5I	GGATG	7 cut(s)	117, 219, 361, 503, 549, 631, 906
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	2 cut(s)	141, 313
BstKTI	GATC	3 cut(s)	108, 658, 807
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	3 cut(s)	105, 655, 804
BstMCI	CGRYCG	1 cut(s)	658
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 621, 992, 1001
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	526
BstV1I	GCAGC	1 cut(s)	829
BstV2I	GAAGAC	1 cut(s)	1117
BstXI	CCANNNNNNTGG	2 cut(s)	267, 638
BsuRI	GGCC	5 cut(s)	102, 259, 571, 642, 995
BtgZI	GCGATG	1 cut(s)	407
BtsCI	GGATG	7 cut(s)	117, 219, 361, 503, 549, 631, 906
BveI	ACCTGC	1 cut(s)	522
Cac8I	GCNNGC	4 cut(s)	211, 569, 622, 744
CfoI	GCGC	2 cut(s)	141, 313
Cfr10I	RCCGGY	3 cut(s)	8, 689, 1048
Cfr13I	GGNCC	2 cut(s)	641, 770
CseI	GACGC	1 cut(s)	1054
Csp6I	GTAC	3 cut(s)	199, 502, 1132
CviAII	CATG	5 cut(s)	314, 329, 944, 970, 983
CviQI	GTAC	3 cut(s)	199, 502, 1132
DdeI	CTNAG	1 cut(s)	853
DpnI	GATC	3 cut(s)	107, 657, 806
DpnII	GATC	3 cut(s)	105, 655, 804
EaeI	YGGCCR	2 cut(s)	100, 257
Eco47I	GGWCC	1 cut(s)	770
Eco47III	AGCGCT	1 cut(s)	140
Eco91I	GGTNACC	1 cut(s)	323
EcoNI	CCTNNNNNAGG	1 cut(s)	914
EcoO109I	RGGNCCY	1 cut(s)	770
EcoO65I	GGTNACC	1 cut(s)	323
FaeI	CATG	5 cut(s)	317, 332, 947, 973, 986
FaqI	GGGAC	2 cut(s)	458, 875
FatI	CATG	5 cut(s)	313, 328, 943, 969, 982
FauNDI	CATATG	1 cut(s)	637
FbaI	TGATCA	1 cut(s)	804
Fnu4HI	GCNGC	1 cut(s)	818
FokI	GGATG	7 cut(s)	104, 206, 368, 510, 536, 618, 893
Fsp4HI	GCNGC	1 cut(s)	818
FspBI	CTAG	2 cut(s)	563, 725
GlaI	GCGC	2 cut(s)	140, 312
GluI	GCNGC	1 cut(s)	818
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	5 cut(s)	102, 259, 571, 642, 995
HapII	CCGG	4 cut(s)	9, 527, 690, 1049
HgaI	GACGC	1 cut(s)	1054
HhaI	GCGC	2 cut(s)	141, 313
Hin1I	GRCGYC	1 cut(s)	1046
Hin1II	CATG	5 cut(s)	317, 332, 947, 973, 986
Hin6I	GCGC	2 cut(s)	139, 311
HinP1I	GCGC	2 cut(s)	139, 311
HincII	GTYRAC	1 cut(s)	892
HindII	GTYRAC	1 cut(s)	892
HinfI	GANTC	1 cut(s)	848
HpaII	CCGG	4 cut(s)	9, 527, 690, 1049
HphI	GGTGA	7 cut(s)	316, 317, 422, 538, 796, 944, 1121
Hpy166II	GTNNAC	3 cut(s)	265, 662, 892
Hpy188I	TCNGA	3 cut(s)	655, 685, 856
Hpy188III	TCNNGA	4 cut(s)	109, 289, 659, 910
Hpy8I	GTNNAC	3 cut(s)	265, 662, 892
HpyAV	CCTTC	3 cut(s)	166, 605, 840
HpyCH4III	ACNGT	3 cut(s)	364, 722, 889
HpyCH4V	TGCA	5 cut(s)	213, 670, 701, 817, 986
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 621, 992, 1001
HpyF3I	CTNAG	1 cut(s)	853
Hsp92I	GRCGYC	1 cut(s)	1046
Hsp92II	CATG	5 cut(s)	317, 332, 947, 973, 986
HspAI	GCGC	2 cut(s)	139, 311
Ksp22I	TGATCA	1 cut(s)	804
Kzo9I	GATC	3 cut(s)	105, 655, 804
LmnI	GCTCC	2 cut(s)	158, 875
Lsp1109I	GCAGC	1 cut(s)	829
LweI	GCATC	2 cut(s)	676, 915
MaeI	CTAG	2 cut(s)	563, 725
MaeIII	GTNAC	3 cut(s)	323, 428, 1109
MalI	GATC	3 cut(s)	107, 657, 806
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	3 cut(s)	105, 655, 804
MboII	GAAGA	3 cut(s)	27, 640, 1117
MlsI	TGGCCA	1 cut(s)	259
MluCI	AATT	1 cut(s)	214
MluNI	TGGCCA	1 cut(s)	259
MmeI	TCCRAC	2 cut(s)	577, 1017
Mox20I	TGGCCA	1 cut(s)	259
MscI	TGGCCA	1 cut(s)	259
MslI	CAYNNNNRTG	3 cut(s)	318, 636, 981
Msp20I	TGGCCA	1 cut(s)	259
MspI	CCGG	4 cut(s)	9, 527, 690, 1049
MspR9I	CCNGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	4 cut(s)	138, 621, 992, 1001
NciI	CCSGG	1 cut(s)	528
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	3 cut(s)	105, 655, 804
NlaIII	CATG	5 cut(s)	317, 332, 947, 973, 986
NlaIV	GGNNCC	4 cut(s)	7, 448, 536, 643
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	3 cut(s)	323, 428, 1109
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	848
PflFI	GACNNNGTC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	988
PkrI	GCNGC	1 cut(s)	819
Ple19I	CGATCG	1 cut(s)	658
PpuMI	RGGWCCY	1 cut(s)	770
PsiI	TTATAA	1 cut(s)	1147
Psp5II	RGGWCCY	1 cut(s)	770
PspEI	GGTNACC	1 cut(s)	323
PspN4I	GGNNCC	4 cut(s)	7, 448, 536, 643
PspPI	GGNCC	2 cut(s)	641, 770
PspPPI	RGGWCCY	1 cut(s)	770
PsyI	GACNNNGTC	1 cut(s)	362
PvuI	CGATCG	1 cut(s)	658
RsaI	GTAC	3 cut(s)	200, 503, 1133
RsaNI	GTAC	3 cut(s)	199, 502, 1132
RseI	CAYNNNNRTG	3 cut(s)	318, 636, 981
SatI	GCNGC	1 cut(s)	818
Sau3AI	GATC	3 cut(s)	105, 655, 804
Sau96I	GGNCC	2 cut(s)	641, 770
ScrFI	CCNGG	1 cut(s)	528
SfaNI	GCATC	2 cut(s)	676, 915
SinI	GGWCC	1 cut(s)	770
SmiMI	CAYNNNNRTG	3 cut(s)	318, 636, 981
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	2 cut(s)	24, 151
SspMI	CTAG	2 cut(s)	563, 725
StyD4I	CCNGG	1 cut(s)	526
TaaI	ACNGT	3 cut(s)	364, 722, 889
TaqII	GACCGA	1 cut(s)	356
TasI	AATT	1 cut(s)	214
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	848
TseFI	GTSAC	3 cut(s)	323, 428, 1109
TseI	GCWGC	1 cut(s)	817
Tsp45I	GTSAC	3 cut(s)	323, 428, 1109
TspDTI	ATGAA	2 cut(s)	624, 822
Tth111I	GACNNNGTC	1 cut(s)	362
Van91I	CCANNNNNTGG	1 cut(s)	988
VpaK11BI	GGWCC	1 cut(s)	770
XagI	CCTNNNNNAGG	1 cut(s)	914
XspI	CTAG	2 cut(s)	563, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.